jackhill/guix/guix.git
4 years agognu: Add cl-postgres.
Guillaume Le Vaillant [Tue, 25 Feb 2020 18:11:58 +0000 (19:11 +0100)]
gnu: Add cl-postgres.

* gnu/packages/lisp-xyz.scm (sbcl-cl-postgres, cl-postgres): New variables.

4 years agognu: Add cl-simple-date.
Guillaume Le Vaillant [Tue, 25 Feb 2020 18:00:58 +0000 (19:00 +0100)]
gnu: Add cl-simple-date.

* gnu/packages/lisp-xyz.scm (sbcl-simple-date, cl-simple-date,
  ecl-simple-date): New variables.

4 years agognu: Add cl-mysql.
Guillaume Le Vaillant [Tue, 25 Feb 2020 17:33:30 +0000 (18:33 +0100)]
gnu: Add cl-mysql.

* gnu/packages/lisp-xyz.scm (sbcl-cl-mysql, cl-mysql): New variables.

4 years agognu: Add r-rstanarm.
Ricardo Wurmus [Wed, 26 Feb 2020 09:12:36 +0000 (10:12 +0100)]
gnu: Add r-rstanarm.

* gnu/packages/cran.scm (r-rstanarm): New variable.

4 years agognu: Add r-rstan.
Ricardo Wurmus [Wed, 26 Feb 2020 09:12:28 +0000 (10:12 +0100)]
gnu: Add r-rstan.

* gnu/packages/cran.scm (r-rstan): New variable.

4 years agognu: Add r-loo.
Ricardo Wurmus [Wed, 26 Feb 2020 09:12:14 +0000 (10:12 +0100)]
gnu: Add r-loo.

* gnu/packages/cran.scm (r-loo): New variable.

4 years agognu: Add r-rstantools.
Ricardo Wurmus [Wed, 26 Feb 2020 09:12:02 +0000 (10:12 +0100)]
gnu: Add r-rstantools.

* gnu/packages/cran.scm (r-rstantools): New variable.

4 years agognu: Add r-shinystan.
Ricardo Wurmus [Wed, 26 Feb 2020 09:11:51 +0000 (10:11 +0100)]
gnu: Add r-shinystan.

* gnu/packages/cran.scm (r-shinystan): New variable.

4 years agognu: Add r-dygraphs.
Ricardo Wurmus [Wed, 26 Feb 2020 08:18:17 +0000 (09:18 +0100)]
gnu: Add r-dygraphs.

* gnu/packages/cran.scm (r-dygraphs): New variable.

4 years agognu: Remove python-loompy-for-pigx-scrnaseq.
Ricardo Wurmus [Wed, 26 Feb 2020 07:59:11 +0000 (08:59 +0100)]
gnu: Remove python-loompy-for-pigx-scrnaseq.

* gnu/packages/bioinformatics.scm (python-loompy-for-pigx-scrnaseq): Remove
variable.

4 years agognu: pigx-scrnaseq: Update to 1.1.3.
Ricardo Wurmus [Wed, 26 Feb 2020 07:58:06 +0000 (08:58 +0100)]
gnu: pigx-scrnaseq: Update to 1.1.3.

* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.3.
[arguments]: Remove.
[inputs]: Remove dropseq-tools and java-picard; add flexbar, jellyfish, and
r-seurat; replace python-loompy-for-pigx-scrnaseq with python-loompy.

4 years agognu: clang-runtime-3.5: Fix build.
Ricardo Wurmus [Tue, 25 Feb 2020 21:47:17 +0000 (22:47 +0100)]
gnu: clang-runtime-3.5: Fix build.

* gnu/packages/llvm.scm (clang-runtime-3.5)
[inputs]: Add libtirpc.
[arguments]: Add phase to find rpc headers.

4 years agognu: Add r-rsconnect.
Ricardo Wurmus [Tue, 25 Feb 2020 21:08:38 +0000 (22:08 +0100)]
gnu: Add r-rsconnect.

* gnu/packages/cran.scm (r-rsconnect): New variable.

4 years agognu: Add r-packrat.
Ricardo Wurmus [Tue, 25 Feb 2020 21:07:51 +0000 (22:07 +0100)]
gnu: Add r-packrat.

* gnu/packages/cran.scm (r-packrat): New variable.

4 years agognu: zrythm: Update to 0.7.573.
Alexandros Theodotou [Tue, 25 Feb 2020 15:22:53 +0000 (15:22 +0000)]
gnu: zrythm: Update to 0.7.573.

* gnu/packages/music.scm (zrythm): Update to 0.7.573.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
4 years agognu: libzip: Update to 1.6.1.
Marius Bakke [Tue, 25 Feb 2020 16:40:43 +0000 (17:40 +0100)]
gnu: libzip: Update to 1.6.1.

* gnu/packages/compression.scm (libzip): Update to 1.6.1.
[inputs]: Add XZ.

4 years agognu: python-xmlschema: Update to 1.1.1.
Marius Bakke [Tue, 25 Feb 2020 16:18:32 +0000 (17:18 +0100)]
gnu: python-xmlschema: Update to 1.1.1.

* gnu/packages/xml.scm (python-xmlschema): Update to 1.1.1.

4 years agognu: xapian: Update to 1.4.15.
Marius Bakke [Tue, 25 Feb 2020 15:55:15 +0000 (16:55 +0100)]
gnu: xapian: Update to 1.4.15.

* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.15.

4 years agognu: libgphoto2: Update to 2.5.24.
Marius Bakke [Tue, 25 Feb 2020 15:41:46 +0000 (16:41 +0100)]
gnu: libgphoto2: Update to 2.5.24.

* gnu/packages/photo.scm (libgphoto2): Update to 2.5.24.

4 years agognu: fluidsynth: Update to 2.1.1.
Marius Bakke [Tue, 25 Feb 2020 15:37:51 +0000 (16:37 +0100)]
gnu: fluidsynth: Update to 2.1.1.

* gnu/packages/audio.scm (fluidsynth): Update to 2.1.1.

4 years agognu: mbedtls-apache: Update to 2.16.5.
Marius Bakke [Tue, 25 Feb 2020 15:33:02 +0000 (16:33 +0100)]
gnu: mbedtls-apache: Update to 2.16.5.

* gnu/packages/tls.scm (mbedtls-apache): Update to 2.16.5.

4 years agognu: ungoogled-chromium: Update to 80.0.3987.122-0.bb952f1 [security fixes].
Marius Bakke [Tue, 25 Feb 2020 15:28:59 +0000 (16:28 +0100)]
gnu: ungoogled-chromium: Update to 80.0.3987.122-0.bb952f1 [security fixes].

This release fixes CVE-2020-6407 and CVE-2020-6418.

* gnu/packages/chromium.scm (%chromium-version): Set to 80.0.3987.122.
(%ungoogled-revision): Update to 6056988937eb.
(%chromium-origin): Update hash.
(%ungoogled-origin): Download from pull request, update hash.

4 years agognu: ungoogled-chromium-wayland: Fix build.
Marius Bakke [Tue, 25 Feb 2020 15:14:54 +0000 (16:14 +0100)]
gnu: ungoogled-chromium-wayland: Fix build.

* gnu/packages/chromium.scm (ungoogled-chromium/wayland)[arguments]: Add #:phases.

4 years agognu: ungoogled-chromium: Add license information about preserved files.
Marius Bakke [Tue, 25 Feb 2020 15:14:23 +0000 (16:14 +0100)]
gnu: ungoogled-chromium: Add license information about preserved files.

This is a follow-up to commit f613d459be9a91ca778d1a2d5ece941ee21469b5.

* gnu/packages/chromium.scm (%preserved-third-party-files): Annotate newly
added entries with license information.

4 years agognu: emacs-geiser: Update to 0.11.2.
Pierre Neidhardt [Tue, 25 Feb 2020 14:52:38 +0000 (15:52 +0100)]
gnu: emacs-geiser: Update to 0.11.2.

* gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.11.2.

4 years agognu: Add rust-syn-0.11 and rust-synom-0.11.
Valentin Ignatev [Sun, 26 Jan 2020 13:00:43 +0000 (16:00 +0300)]
gnu: Add rust-syn-0.11 and rust-synom-0.11.

* gnu/packages/crates-io.scm (rust-syn-0.11, rust-synom-0.11):
New variables.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-walkdir-1.0.
Valentin Ignatev [Sun, 26 Jan 2020 12:58:49 +0000 (15:58 +0300)]
gnu: Add rust-walkdir-1.0.

* gnu/packages/crates-io.scm (rust-walkdir-1.0): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: rust-regex-syntax-0.3: Don't skip build.
Efraim Flashner [Tue, 25 Feb 2020 14:28:05 +0000 (16:28 +0200)]
gnu: rust-regex-syntax-0.3: Don't skip build.

* gnu/packages/crates-io.scm (rust-regex-syntax-0.3)[arguments]: Don't
skip build.

4 years agognu: Add rust-quickcheck-0.4.
Valentin Ignatev [Sat, 25 Jan 2020 23:07:15 +0000 (02:07 +0300)]
gnu: Add rust-quickcheck-0.4.

* gnu/packages/crates-io.scm (rust-quickcheck-0.4): New variable.
(rust-quickcheck-0.2): Inherit from rust-quickcheck-0.4.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: rust-conv-0.3: Don't skip build.
Efraim Flashner [Tue, 25 Feb 2020 14:18:22 +0000 (16:18 +0200)]
gnu: rust-conv-0.3: Don't skip build.

* gnu/packages/crates-io.scm (rust-conv-0.3)[source]: Add snippet to
relax version requirements.
[arguments]: Don't skip build.

4 years agognu: Add rust-regex-0.1 and its cyclic dependencies.
Valentin Ignatev [Sat, 25 Jan 2020 23:03:55 +0000 (02:03 +0300)]
gnu: Add rust-regex-0.1 and its cyclic dependencies.

* gnu/packages/crates-io.scm (rust-regex-0.1, rust-aho-corasick-0.5,
rust-byteorder-0.5, rust-csv-0.14, rust-docopt-0.6, rust-memchr-0.1,
rust-utf8-ranges-0.1): New variables.
(rust-env-logger-0.3)[arguments]: Add missing input.
(rust-quickcheck-0.2)[arguments]: Don't skip build.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-obj-0.9.
Valentin Ignatev [Sat, 25 Jan 2020 22:46:39 +0000 (01:46 +0300)]
gnu: Add rust-obj-0.9.

* gnu/packages/crates-io.scm (rust-obj-0.9): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-genmesh-0.6.
Valentin Ignatev [Sat, 25 Jan 2020 22:46:08 +0000 (01:46 +0300)]
gnu: Add rust-genmesh-0.6.

* gnu/packages/crates-io.scm (rust-genmesh-0.6): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-cgmath-0.16.
Valentin Ignatev [Sat, 25 Jan 2020 22:45:36 +0000 (01:45 +0300)]
gnu: Add rust-cgmath-0.16.

* gnu/packages/crates-io.scm (rust-cgmath-0.16): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-cgmath-0.17.
Valentin Ignatev [Sat, 25 Jan 2020 22:44:47 +0000 (01:44 +0300)]
gnu: Add rust-cgmath-0.17.

* gnu/packages/crates-io.scm (rust-cgmath-0.17): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-rusttype-0.8.
Valentin Ignatev [Sat, 25 Jan 2020 22:33:47 +0000 (01:33 +0300)]
gnu: Add rust-rusttype-0.8.

* gnu/packages/crates-io.scm (rust-rusttype-0.8): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-line-drawing-0.7.
Valentin Ignatev [Sat, 25 Jan 2020 22:30:49 +0000 (01:30 +0300)]
gnu: Add rust-line-drawing-0.7.

* gnu/packages/crates-io.scm (rust-line-drawing-0.7): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-image-0.20.
Valentin Ignatev [Sat, 25 Jan 2020 22:30:07 +0000 (01:30 +0300)]
gnu: Add rust-image-0.20.

* gnu/packages/crates-io.scm (rust-image-0.20): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-image-0.21.
Valentin Ignatev [Sat, 25 Jan 2020 22:29:21 +0000 (01:29 +0300)]
gnu: Add rust-image-0.21.

* gnu/packages/crates-io.scm (rust-image-0.21): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-image-0.22.
Valentin Ignatev [Sat, 25 Jan 2020 22:28:24 +0000 (01:28 +0300)]
gnu: Add rust-image-0.22.

* gnu/packages/crates-io.scm (rust-image-0.22): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-tiff-0.2.
Valentin Ignatev [Sat, 25 Jan 2020 22:27:00 +0000 (01:27 +0300)]
gnu: Add rust-tiff-0.2.

* gnu/packages/crates-io.scm (rust-tiff-0.2): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-tiff-0.3.
Valentin Ignatev [Sat, 25 Jan 2020 22:25:57 +0000 (01:25 +0300)]
gnu: Add rust-tiff-0.3.

* gnu/packages/crates-io.scm (rust-tiff-0.3): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-jpeg-decoder-0.1.
Valentin Ignatev [Sat, 25 Jan 2020 22:24:31 +0000 (01:24 +0300)]
gnu: Add rust-jpeg-decoder-0.1.

* gnu/packages/crates-io.scm (rust-jpeg-decoder-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: jamm: Update to 1.0.7.6.
Ricardo Wurmus [Tue, 25 Feb 2020 14:33:44 +0000 (15:33 +0100)]
gnu: jamm: Update to 1.0.7.6.

* gnu/packages/bioinformatics.scm (jamm): Update to 1.0.7.6.

4 years agognu: Add r-bsgenome-hsapiens-ncbi-grch38.
Mădălin Ionel Patrașcu [Tue, 25 Feb 2020 13:52:25 +0000 (14:52 +0100)]
gnu: Add r-bsgenome-hsapiens-ncbi-grch38.

* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ncbi-grch38): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
4 years agognu: plantuml: Update to 1.2020.1.
Jelle Licht [Tue, 25 Feb 2020 12:47:40 +0000 (13:47 +0100)]
gnu: plantuml: Update to 1.2020.1.

* gnu/packages/uml.scm (plantuml): Update to 1.2020.1.
[arguments]<#:phases>[delete-extra-from-classpath]: Modify.

4 years agobuild-system/linux-module: Disable depmod.
Danny Milosavljevic [Tue, 18 Feb 2020 09:42:06 +0000 (10:42 +0100)]
build-system/linux-module: Disable depmod.

* guix/build/linux-module-build-system.scm (install): Disable depmod.

4 years agognu: Add rust-png-0.12.
Valentin Ignatev [Sat, 25 Jan 2020 22:23:56 +0000 (01:23 +0300)]
gnu: Add rust-png-0.12.

* gnu/packages/crates-io.scm (rust-png-0.12): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-png-0.14.
Valentin Ignatev [Sat, 25 Jan 2020 22:23:20 +0000 (01:23 +0300)]
gnu: Add rust-png-0.14.

* gnu/packages/crates-io.scm (rust-png-0.14): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-png-0.15.
Valentin Ignatev [Sat, 25 Jan 2020 22:20:29 +0000 (01:20 +0300)]
gnu: Add rust-png-0.15.

* gnu/packages/crates-io.scm (rust-png-0.15): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-servo-fontconfig-0.4.
Valentin Ignatev [Mon, 20 Jan 2020 00:59:16 +0000 (03:59 +0300)]
gnu: Add rust-servo-fontconfig-0.4.

* gnu/packages/crates-io.scm (rust-servo-fontconfig-0.4):
New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-servo-fontconfig-sys-4.
Valentin Ignatev [Mon, 20 Jan 2020 00:58:55 +0000 (03:58 +0300)]
gnu: Add rust-servo-fontconfig-sys-4.

* gnu/packages/crates-io.scm (rust-servo-fontconfig-sys-4):
New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-servo-freetype-sys-4.
Valentin Ignatev [Mon, 20 Jan 2020 00:58:31 +0000 (03:58 +0300)]
gnu: Add rust-servo-freetype-sys-4.

* gnu/packages/crates-io.scm (rust-servo-freetype-sys-4): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: rust-nix-0.15: Don't skip build.
Efraim Flashner [Tue, 25 Feb 2020 07:56:46 +0000 (09:56 +0200)]
gnu: rust-nix-0.15: Don't skip build.

* gnu/packages/crates-io.scm (rust-nix-0.15)[arguments]: Don't skip
build. Skip tests. Move rust-cc-1.0 from cargo-development-inputs to
cargo-inputs. Replace rust-rand-0.4 with 0.6, rust-sysctl-0.4 with 0.1
in cargo-development-inputs.

4 years agognu: Add rust-sema-0.1.
Valentin Ignatev [Mon, 20 Jan 2020 00:55:45 +0000 (03:55 +0300)]
gnu: Add rust-sema-0.1.

* gnu/packages/crates-io.scm (rust-sema-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-expat-sys-2.1.
Valentin Ignatev [Mon, 20 Jan 2020 00:47:41 +0000 (03:47 +0300)]
gnu: Add rust-expat-sys-2.1.

* gnu/packages/crates-io.scm (rust-expat-sys-2.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-gif-0.10.
Valentin Ignatev [Mon, 20 Jan 2020 00:49:33 +0000 (03:49 +0300)]
gnu: Add rust-gif-0.10.

* gnu/packages/crates-io.scm (rust-gif-0.10): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-memmap-0.2.
Valentin Ignatev [Mon, 20 Jan 2020 00:53:25 +0000 (03:53 +0300)]
gnu: Add rust-memmap-0.2.

* gnu/packages/crates-io.scm (rust-memmap-0.2): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-color-quant-1.0.
Valentin Ignatev [Mon, 20 Jan 2020 00:49:00 +0000 (03:49 +0300)]
gnu: Add rust-color-quant-1.0.

* gnu/packages/crates-io.scm (rust-color-quant-1.0): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: datamash: Update to 1.6.
Efraim Flashner [Tue, 25 Feb 2020 06:53:50 +0000 (08:53 +0200)]
gnu: datamash: Update to 1.6.

* gnu/packages/datamash.scm (datamash): Update to 1.6.

4 years agognu: font-fantasque-sans: Update to 1.8.0.
Tobias Geerinckx-Rice [Wed, 8 Jan 2020 15:51:05 +0000 (16:51 +0100)]
gnu: font-fantasque-sans: Update to 1.8.0.

* gnu/packages/fonts.scm (font-fantasque-sans): Update to 1.8.0.
[native-inputs]: Remove ttf2eot.
[arguments]: Rename the ‘xrange->range’ phase to ‘support-python@3’.  Patch another Python twoism.

4 years agoRevert "gnu: vim: Fix build on CoW file systems."
Tobias Geerinckx-Rice [Tue, 25 Feb 2020 00:59:37 +0000 (01:59 +0100)]
Revert "gnu: vim: Fix build on CoW file systems."

This reverts commit b947ba77e60d3d3c5cc6a1c914096e7dab1f7db7.

4 years agoguix: node-build-system: Do not symlink /bin.
Julien Lepiller [Mon, 24 Feb 2020 23:26:16 +0000 (00:26 +0100)]
guix: node-build-system: Do not symlink /bin.

* guix/build/node-build-system.scm (install): Do not add a symlink for
/bin.

4 years agognu: ungoogled-chromium: Update to 80.0.3987.116-0.bb952f1.
Marius Bakke [Mon, 24 Feb 2020 21:56:30 +0000 (22:56 +0100)]
gnu: ungoogled-chromium: Update to 80.0.3987.116-0.bb952f1.

* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for
Chromium 80.
(%chromium-version): Set to 80.0.3987.116.
(%ungoogled-revision): Set to bb952f18c8c80c569583edd8dbb0b54443f49043.
(%debian-revision): Set to debian/80.0.3987.116-1.
(%chromium-origin, %ungoogled-origin, %debian-origin): Update hashes.
(ungoogled-chromium)[arguments]: In #:configure-flags, add "is_cfi=false".
Remove "is_clang", "enable_iterator_debugging", "exclude_unwind_tables",
"use_jumbo_build", "jumbo_file_merge_limit".  Adjust environment for building
with Clang.
[native-inputs]: Remove GCC-8.  Add CLANG-9 and LD-WRAPPER-NEXT.

4 years agognu: Add ld wrapper variant that supports quotes in response files.
Marius Bakke [Mon, 24 Feb 2020 21:46:03 +0000 (22:46 +0100)]
gnu: Add ld wrapper variant that supports quotes in response files.

* gnu/packages/ld-wrapper-next.in: New file.
* gnu/local.mk (MISC_DISTRO_FILES): Adjust accordingly.
* gnu/packages/chromium.scm (ld-wrapper-next): New variable.

4 years agognu: Add libtcod.
Giacomo Leidi [Sun, 16 Feb 2020 21:42:42 +0000 (22:42 +0100)]
gnu: Add libtcod.

* gnu/packages/game-development.scm (libtcod): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
4 years agognu: Add lodepng.
Giacomo Leidi [Sun, 16 Feb 2020 21:21:32 +0000 (22:21 +0100)]
gnu: Add lodepng.

* gnu/packages/image.scm (lodepng): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
4 years agognu: python-igraph: Update to 0.8.0.
Ricardo Wurmus [Mon, 24 Feb 2020 18:27:46 +0000 (19:27 +0100)]
gnu: python-igraph: Update to 0.8.0.

* gnu/packages/graph.scm (python-igraph): Update to 0.8.0.
[arguments]: Replace build phase; move check phase after install phase; pass
"--use-pkg-config" to avoid rebuilding igraph.
[propagated-inputs]: Add python-texttable.
[native-inputs]: Add python-pytest.

4 years agognu: python-texttable: Update to 1.6.2.
Ricardo Wurmus [Mon, 24 Feb 2020 18:22:49 +0000 (19:22 +0100)]
gnu: python-texttable: Update to 1.6.2.

* gnu/packages/python-xyz.scm (python-texttable): Update to 1.6.2.
[arguments]: Replace check phase.
[native-inputs]: Add python-pytest.
[license]: Change to Expat.

4 years agognu: igraph: Update to 0.8.0.
Ricardo Wurmus [Mon, 24 Feb 2020 13:10:49 +0000 (14:10 +0100)]
gnu: igraph: Update to 0.8.0.

* gnu/packages/graph.scm (igraph): Update to 0.8.0.

4 years agognu: opensmtpd: Update to 6.6.4p1 [security fixes].
Tobias Geerinckx-Rice [Mon, 24 Feb 2020 17:39:03 +0000 (18:39 +0100)]
gnu: opensmtpd: Update to 6.6.4p1 [security fixes].

See <https://www.mail-archive.com/misc@opensmtpd.org/msg04888.html>.

* gnu/packages/mail.scm (opensmtpd): Update to 6.6.4p1.

4 years agognu: mesa-opencl: Build with clang@8.
Marius Bakke [Mon, 24 Feb 2020 01:13:56 +0000 (02:13 +0100)]
gnu: mesa-opencl: Build with clang@8.

* gnu/packages/gl.scm (mesa-opencl)[native-inputs]: Change from CLANG to CLANG-8.

4 years agognu: LLVM: Promote LLVM 9 to the default 'llvm' package.
Marius Bakke [Sun, 23 Feb 2020 23:54:06 +0000 (00:54 +0100)]
gnu: LLVM: Promote LLVM 9 to the default 'llvm' package.

* gnu/packages/llvm.scm (llvm-8): Rename to ...
(llvm): ... this.  Update to 9.0.1.
[license]: Change to ASL2.0.
(clang-runtime-from-llvm)[license]: Inherit from LLVM.
(clang-from-llvm)[license]: Conditionally choose license based on version.
(llvm-9, clang-runtime-8, clang-8, clang-toolchain-8): New public variables.
(llvm-7): Inherit from LLVM-8 (for the license change).
(llvm-6): Inherit from LLVM-7.
(llvm-3.9.1): Inherit from LLVM-6.
(llvm-3.8): Inherit from LLVM-3.9.1.
(llvm-3.7): Inherit from LLVM-3.8.
(llvm-3.6): Inherit from LLVM-3.7.
(llvm-3.5): Inherit from LLVM-3.6.
(libcxx, libclc, libomp): Update to 9.0.1.

4 years agognu: mesa: Build with llvm@8 explicitly.
Marius Bakke [Sun, 23 Feb 2020 23:53:24 +0000 (00:53 +0100)]
gnu: mesa: Build with llvm@8 explicitly.

* gnu/packages/gl.scm (mesa)[inputs]: Change from LLVM to LLVM-8.

4 years agognu: clang: Use the correct CLANG-RUNTIME for versions 6 and 7.
Marius Bakke [Sun, 23 Feb 2020 23:36:55 +0000 (00:36 +0100)]
gnu: clang: Use the correct CLANG-RUNTIME for versions 6 and 7.

* gnu/packages/llvm.scm (clang-7): Use CLANG-RUNTIME-7.
(clang-6): Use CLANG-RUNTIME-6.

4 years agognu: Reorganize llvm.scm.
Marius Bakke [Sun, 23 Feb 2020 22:45:32 +0000 (23:45 +0100)]
gnu: Reorganize llvm.scm.

* gnu/packages/llvm.scm (libcxx, libclc, libomp, libcxx-6): Move package
definitions below the various LLVM/Clang variants.

4 years agognu: freecad. Use qt-build-system.
John Soo [Sat, 22 Feb 2020 05:15:38 +0000 (21:15 -0800)]
gnu: freecad. Use qt-build-system.

* gnu/packages/engineering.scm (freecad)[build-system]: Use qt-build-system.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
4 years agognu: freecad. Fix build failure.
John Soo [Sat, 22 Feb 2020 05:14:57 +0000 (21:14 -0800)]
gnu: freecad. Fix build failure.

* gnu/packages/engineering.scm (freecad)[inputs]: Use qtbase-patched instead
of qtbase.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
4 years agognu: qtbase: Add variant that fixes file name handling in CMake macros.
John Soo [Sat, 22 Feb 2020 05:13:47 +0000 (21:13 -0800)]
gnu: qtbase: Add variant that fixes file name handling in CMake macros.

* gnu/packages/patches/qtbase-QTBUG-81715.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/qt.scm (qtbase-patched): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
4 years agognu: clang@9: Update to 9.0.1.
Marius Bakke [Fri, 21 Feb 2020 16:40:29 +0000 (17:40 +0100)]
gnu: clang@9: Update to 9.0.1.

* gnu/packages/llvm.scm (llvm-9): Update to 9.0.1.
clang-runtime-9, clang-9): Update hashes.

4 years agognu: llvm: Add helper procedure for constructing download URLs.
Marius Bakke [Fri, 21 Feb 2020 16:38:28 +0000 (17:38 +0100)]
gnu: llvm: Add helper procedure for constructing download URLs.

...in preparation for LLVM 9.0.1 which is no longer hosted on llvm.org.

* gnu/packages/llvm.scm (llvm-download-uri): New procedure.
(llvm-8, clang-runtime-from-llvm, clang-from-llvm, libcxx, libomp, llvm-9,
llvm-7, llvm-6, libcxx-6, llvm-3.9.1, llvm-3.8, llvm-3.7, llvm-3.6,
llvm-3.5)[source](uri): Use it.

4 years agognu: clang@9: Fix search path handling.
Marius Bakke [Fri, 21 Feb 2020 16:07:39 +0000 (17:07 +0100)]
gnu: clang@9: Fix search path handling.

* gnu/packages/patches/clang-9.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/llvm.scm (clang-9): Add #:patches.

4 years agognu: node: Increase build timeouts.
Marius Bakke [Thu, 20 Feb 2020 19:39:44 +0000 (20:39 +0100)]
gnu: node: Increase build timeouts.

* gnu/packages/node.scm (node)[properties]: Add MAX-SILENT-TIME.  Increase
TIMEOUT from 3600 seconds to 14400.

4 years agognu: espeak-ng: Update to 1.50.
Marius Bakke [Thu, 20 Feb 2020 19:34:24 +0000 (20:34 +0100)]
gnu: espeak-ng: Update to 1.50.

* gnu/packages/speech.scm (espeak-ng): Update to 1.50.
[source]: Change to GIT-FETCH.
[native-inputs]: Add AUTOCONF, AUTOMAKE, LIBTOOL, and WHICH.

4 years agognu: libgme: Remove obsolete workaround.
Marius Bakke [Thu, 20 Feb 2020 17:11:11 +0000 (18:11 +0100)]
gnu: libgme: Remove obsolete workaround.

* gnu/packages/music.scm (libgme)[native-inputs]: Remove.

4 years agognu: python-libarchive-c: Update to 2.9.
Marius Bakke [Thu, 20 Feb 2020 16:06:24 +0000 (17:06 +0100)]
gnu: python-libarchive-c: Update to 2.9.

* gnu/packages/python-xyz.scm (python-libarchive-c): Update to 2.9.

4 years agognu: git-repo: Update to 2.3.
Maxim Cournoyer [Mon, 24 Feb 2020 14:31:12 +0000 (09:31 -0500)]
gnu: git-repo: Update to 2.3.

* gnu/packages/android.scm (git-repo): Update to 2.3.
[arguments]: Remove the #:python argument.  git-repo v2.x is now compatible
with Python 3.
[phases]{configure-git}: New phase.
{set-executable-paths}: Adapt the substitution rule for the GIT command.
{check}: Use the "run_tests" script to launch tests.
[native-inputs]: Replace python2-nose by python-test.

4 years agognu: rust-cbindgen: Update to 0.13.1.
Efraim Flashner [Mon, 24 Feb 2020 11:29:30 +0000 (13:29 +0200)]
gnu: rust-cbindgen: Update to 0.13.1.

* gnu/packages/rust-apps.scm (rust-cbindgen): Update to 0.13.1.

4 years agognu: rust-encoding-rs-io-0.1: Upgrade to 0.1.7.
Efraim Flashner [Mon, 24 Feb 2020 09:55:46 +0000 (11:55 +0200)]
gnu: rust-encoding-rs-io-0.1: Upgrade to 0.1.7.

* gnu/packages/crates-io.scm (rust-encoding-rs-io-0.1): Upgrade to 0.1.7.
[arguments]: Don't skip build.

4 years agognu: Add rust-serde-cbor-0.11.
Efraim Flashner [Mon, 24 Feb 2020 09:51:02 +0000 (11:51 +0200)]
gnu: Add rust-serde-cbor-0.11.

* gnu/packages/crates-io.scm (rust-serde-cbor-0.11): New variable.
(rust-serde-cbor-0.10): Inherit from rust-serde-cbor-0.11.

4 years agobuild-system: Fix copy-build-system default install plan.
Pierre Neidhardt [Mon, 24 Feb 2020 10:22:02 +0000 (11:22 +0100)]
build-system: Fix copy-build-system default install plan.

* guix/build-system/copy.scm (copy-build): Set install-plan default value
  to copy everything from source to the output.

4 years agoui: Don't truncate search output when inside Emacs.
Pierre Neidhardt [Mon, 17 Feb 2020 13:38:48 +0000 (14:38 +0100)]
ui: Don't truncate search output when inside Emacs.

* guix/ui.scm (display-search-results): Loop over all results when
  INSIDE_EMACS is set.

4 years agoui: Don't disable colors when INSIDE_EMACS is set.
Pierre Neidhardt [Mon, 17 Feb 2020 13:27:52 +0000 (14:27 +0100)]
ui: Don't disable colors when INSIDE_EMACS is set.

* guix/colors.scm (color-output?): Remove INSIDE_EMACS condition.

4 years agoui: Only display link in capable terminals.
zimoun [Mon, 17 Feb 2020 13:16:53 +0000 (14:16 +0100)]
ui: Only display link in capable terminals.

* guix/ui.scm (display-generation): Display generation path on new line.
* guix/scripts/describe.scm (channel-commit-hyperlink): Add TRANSFORMER argument.
(display-profile-content): Use TRANSFORMER argument to display URL explicitly
when terminal does not support hyperlinks.

4 years agognu: wxwidgets-2: Fix build.
Ricardo Wurmus [Mon, 24 Feb 2020 09:39:49 +0000 (10:39 +0100)]
gnu: wxwidgets-2: Fix build.

* gnu/packages/wxwidgets.scm (wxwidgets-2)[arguments]: Add phase
ignore-narrowing-errors to patch "configure" script.

4 years agognu: Add rust-euclid-0.20.
Valentin Ignatev [Mon, 20 Jan 2020 00:47:17 +0000 (03:47 +0300)]
gnu: Add rust-euclid-0.20.

* gnu/packages/crates-io.scm (rust-euclid-0.20): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-dlib-0.4.
Valentin Ignatev [Mon, 20 Jan 2020 00:46:42 +0000 (03:46 +0300)]
gnu: Add rust-dlib-0.4.

* gnu/packages/crates-io.scm (rust-dlib-0.4): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-deflate-0.7.
Valentin Ignatev [Mon, 20 Jan 2020 00:45:59 +0000 (03:45 +0300)]
gnu: Add rust-deflate-0.7.

* gnu/packages/crates-io.scm (rust-deflate-0.7): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-gzip-header-0.3.
Valentin Ignatev [Mon, 20 Jan 2020 00:45:26 +0000 (03:45 +0300)]
gnu: Add rust-gzip-header-0.3.

* gnu/packages/crates-io.scm (rust-gzip-header-0.3): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Add rust-bzip2-sys-0.1.
Valentin Ignatev [Mon, 20 Jan 2020 00:43:57 +0000 (03:43 +0300)]
gnu: Add rust-bzip2-sys-0.1.

* gnu/packages/crates-io.scm (rust-bzip2-sys-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>