jackhill/guix/guix.git
6 years agognu: git: Return #t from all phases.
Mark H Weaver [Fri, 23 Mar 2018 06:26:50 +0000 (02:26 -0400)]
gnu: git: Return #t from all phases.

* gnu/packages/version-control.scm (git)[arguments]: Return #t from
the 'split' phase.  Use 'invoke' in the 'install-man-pages' phase.

6 years agognu: ghostscript: Use invoke.
Mark H Weaver [Fri, 23 Mar 2018 06:25:19 +0000 (02:25 -0400)]
gnu: ghostscript: Use invoke.

* gnu/packages/ghostscript.scm (ghostscript): Use invoke from the
custom 'build' and 'install' phases.

6 years agognu: gettext-minimal: Return #t from all phases.
Mark H Weaver [Fri, 23 Mar 2018 06:23:16 +0000 (02:23 -0400)]
gnu: gettext-minimal: Return #t from all phases.

* gnu/packages/gettext.scm (gettext-minimal)[arguments]: Return #t from
the 'patch-tests' and 'link-expat' phases.

6 years agognu: geoclue: Return #t from all phases.
Mark H Weaver [Fri, 23 Mar 2018 06:21:53 +0000 (02:21 -0400)]
gnu: geoclue: Return #t from all phases.

* gnu/packages/gnome.scm (geoclue)[arguments]: Return #t from
the 'patch-/bin/true' phase.

6 years agognu: gdk-pixbuf+svg: Use invoke.
Mark H Weaver [Fri, 23 Mar 2018 06:20:18 +0000 (02:20 -0400)]
gnu: gdk-pixbuf+svg: Use invoke.

* gnu/packages/gtk.scm (gdk-pixbuf+svg): Use invoke in
the 'register-svg-loader' phase.

6 years agognu: cross-base: Use invoke in (gnu build cross-toolchain).
Mark H Weaver [Fri, 23 Mar 2018 06:16:14 +0000 (02:16 -0400)]
gnu: cross-base: Use invoke in (gnu build cross-toolchain).

* gnu/build/cross-toolchain.scm (set-cross-path/mingw, install-strip): Use
invoke.

6 years agognu: gawk: Return #t from all phases.
Mark H Weaver [Fri, 23 Mar 2018 06:07:46 +0000 (02:07 -0400)]
gnu: gawk: Return #t from all phases.

* gnu/packages/gawk.scm (gawk)[arguments]: Return #t from
the 'set-shell-file-name' phase.

6 years agognu: fontconfig: Use invoke.
Mark H Weaver [Fri, 23 Mar 2018 06:06:01 +0000 (02:06 -0400)]
gnu: fontconfig: Use invoke.

* gnu/packages/fontutils.scm (fontconfig): Use invoke in the install phase.

6 years agognu: ffmpeg: Use invoke.
Mark H Weaver [Fri, 23 Mar 2018 06:04:03 +0000 (02:04 -0400)]
gnu: ffmpeg: Use invoke.

* gnu/packages/video.scm (ffmpeg)[arguments]: Use invoke in the custom
configure phase.

6 years agognu: faad2: Use invoke.
Mark H Weaver [Fri, 23 Mar 2018 06:02:49 +0000 (02:02 -0400)]
gnu: faad2: Use invoke.

* gnu/packages/audio.scm (faad2)[arguments]: Use invoke in the 'bootstrap'
phase.

6 years agognu: extra-cmake-modules: Return #t from all phases.
Mark H Weaver [Fri, 23 Mar 2018 06:01:25 +0000 (02:01 -0400)]
gnu: extra-cmake-modules: Return #t from all phases.

* gnu/packages/kde-frameworks.scm (extra-cmake-modules)[arguments]: Return #t
from the 'fix-lib-path' phase.

6 years agognu: emacs: Return #t from all phases.
Mark H Weaver [Fri, 23 Mar 2018 05:59:15 +0000 (01:59 -0400)]
gnu: emacs: Return #t from all phases.

* gnu/packages/emacs.scm (emacs)[arguments]: Return #t from the 'fix-/bin/pwd'
phase.

6 years agognu: elogind: Return #t from all phases.
Mark H Weaver [Fri, 23 Mar 2018 05:57:20 +0000 (01:57 -0400)]
gnu: elogind: Return #t from all phases.

* gnu/packages/freedesktop.scm (elogin)[arguments]: Return #t from all phases.
Use invoke and remove vestigial plumbing in the 'autogen' phase.

6 years agognu: dejagnu: Return #t from all phases.
Mark H Weaver [Fri, 23 Mar 2018 05:53:23 +0000 (01:53 -0400)]
gnu: dejagnu: Return #t from all phases.

* gnu/packages/dejagnu.scm (dejagnu)[arguments]: Return #t from all phases.
Raise an exception if make check fails.

6 years agognu: curl: Use invoke.
Mark H Weaver [Fri, 23 Mar 2018 05:50:19 +0000 (01:50 -0400)]
gnu: curl: Use invoke.

* gnu/packages/curl.scm (curl)[arguments]: Use invoke in the check phase.

6 years agognu: autoconf@2.13: Use invoke.
Mark H Weaver [Fri, 23 Mar 2018 05:39:02 +0000 (01:39 -0400)]
gnu: autoconf@2.13: Use invoke.

* gnu/packages/autotools.scm (autoconf-2.13)[arguments]: Use invoke in the
custom configure phase.

6 years agognu: apr-util: Use invoke.
Mark H Weaver [Fri, 23 Mar 2018 05:36:49 +0000 (01:36 -0400)]
gnu: apr-util: Use invoke.

* gnu/packages/apr.scm (apr-util)[arguments]: Use invoke in the custom
configure phase.

6 years agognu: glibc/linux: Return #t from pre-configure phase.
Mark H Weaver [Fri, 23 Mar 2018 03:43:56 +0000 (23:43 -0400)]
gnu: glibc/linux: Return #t from pre-configure phase.

* gnu/packages/base.scm (glibc/linux)[arguments]: Return #t from the
pre-configure phase.

6 years agognu: openldap: Update to 2.4.46.
Tobias Geerinckx-Rice [Fri, 23 Mar 2018 07:28:55 +0000 (08:28 +0100)]
gnu: openldap: Update to 2.4.46.

* gnu/packages/openldap.scm (openldap): Update to 2.4.46.

6 years agognu: cmake: Re-indent.
Arun Isaac [Sat, 24 Feb 2018 12:48:08 +0000 (18:18 +0530)]
gnu: cmake: Re-indent.

* gnu/packages/cmake.scm (cmake): Re-indent.

6 years agognu: cmake: Update to 3.10.2.
Arun Isaac [Thu, 8 Feb 2018 11:19:45 +0000 (16:49 +0530)]
gnu: cmake: Update to 3.10.2.

* gnu/packages/cmake.scm (cmake): Update to 3.10.2.
[source]: Remove cmake-fix-tests patch.
Do not remove bundled cmlibuv.
[arguments]: Replace system* with invoke.
[inputs]: Add rhash. Sort.
[home-page]: Update URL.
* gnu/packages/patches/cmake-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.

6 years agognu: util-linux: Don't build 'nologin'.
Marius Bakke [Thu, 1 Mar 2018 21:33:20 +0000 (22:33 +0100)]
gnu: util-linux: Don't build 'nologin'.

* gnu/packages/linux.scm (util-linux)[source](snippet): Add substitution.

6 years agognu: make: End phase on #t.
Marius Bakke [Mon, 19 Mar 2018 19:11:11 +0000 (20:11 +0100)]
gnu: make: End phase on #t.

* gnu/packages/base.scm (gnu-make)[arguments]: Return #t from
'set-default-shell' phase.

6 years agognu: make: Fix compatibility with glibc 2.27.
Marius Bakke [Sun, 18 Mar 2018 14:12:17 +0000 (15:12 +0100)]
gnu: make: Fix compatibility with glibc 2.27.

* gnu/packages/patches/make-glibc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm (gnu-make)[source](patches): Use it.

6 years agognu: glibc: Update to 2.27.
Marius Bakke [Thu, 15 Mar 2018 20:08:37 +0000 (21:08 +0100)]
gnu: glibc: Update to 2.27.

* gnu/packages/base.scm (glibc/linux): Update to 2.27.
[source](patches): Add 'glibc-hidden-visibility-ldconfig.patch' and
'glibc-2.27-git-fixes.patch'.
[native-inputs]: Add BISON.
[arguments]: Remove deprecated "--enable-add-ons" from #:configure-flags.
Also remove unneeded "libc_cv_ssp=no" and "libcv_ssp_strong=no".
(glibc-2.26): New public variable.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)[native-inputs]:
Add BISON-BOOT0.
* gnu/packages/patches/glibc-2.27-git-fixes.patch,
gnu/packages/patches/glibc-hidden-visibility-ldconfig.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.

6 years agognu: tzdata-for-tests: Update to 2018c.
Mark H Weaver [Thu, 22 Mar 2018 00:19:18 +0000 (20:19 -0400)]
gnu: tzdata-for-tests: Update to 2018c.

* gnu/packages/base.scm (tzdata-for-tests): Replace with a simple hidden copy
of 'tzdata'.

6 years agognu: gcc: Adjust 'strmov' patch for string constants in variables.
Ludovic Courtès [Tue, 20 Mar 2018 22:36:55 +0000 (23:36 +0100)]
gnu: gcc: Adjust 'strmov' patch for string constants in variables.

Fixes <https://bugs.gnu.org/30395>.

* gnu/packages/patches/gcc-strmov-store-file-names.patch: Update patch
to deal with string constants stored in 'static' variables.

6 years agoMerge branch 'master' into core-updates
Mark H Weaver [Tue, 20 Mar 2018 18:22:06 +0000 (14:22 -0400)]
Merge branch 'master' into core-updates

6 years agognu: aspell: Return #t from all phases.
Mark H Weaver [Tue, 20 Mar 2018 18:10:12 +0000 (14:10 -0400)]
gnu: aspell: Return #t from all phases.

* gnu/packages/aspell.scm (aspell)[arguments]: Return #t from
the 'wrap-aspell' phase.

6 years agognu: itstool: Return #t from all phases.
Mark H Weaver [Tue, 20 Mar 2018 18:08:29 +0000 (14:08 -0400)]
gnu: itstool: Return #t from all phases.

* gnu/packages/glib.scm (itstool)[arguments]: Return #t from
the 'wrap-program' phase.

6 years agognu: webkitgtk: Return #t from all phases.
Mark H Weaver [Tue, 20 Mar 2018 18:06:14 +0000 (14:06 -0400)]
gnu: webkitgtk: Return #t from all phases.

* gnu/packages/webkit.scm (webkitgtk)[arguments]: Return #t from
the 'add-gst-plugins-base-include-path' phase.

6 years agognu: orc: Return #t from all phases.
Mark H Weaver [Tue, 20 Mar 2018 18:03:54 +0000 (14:03 -0400)]
gnu: orc: Return #t from all phases.

* gnu/packages/gstreamer.scm (orc)[arguments]: Return #t from
the 'disable-faulty-test' phase.

6 years agoCorrect name and Email for ng0.
ng0 [Tue, 20 Mar 2018 15:39:45 +0000 (15:39 +0000)]
Correct name and Email for ng0.

* .mailmap: Correct name and Email for ng0.
* Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm,
gnu/packages/emacs.scm, gnu/packages/enlightenment.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm,
gnu/packages/games.scm, gnu/packages/gl.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm,
gnu/packages/gtk.scm, gnu/packages/guile-wm.scm,
gnu/packages/guile.scm, gnu/packages/haskell-check.scm,
gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm,
gnu/packages/image-viewers.scm, gnu/packages/image.scm,
gnu/packages/irc.scm, gnu/packages/language.scm,
gnu/packages/libcanberra.scm, gnu/packages/linux.scm,
gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm,
gnu/packages/mail.scm, gnu/packages/markup.scm,
gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm,
gnu/packages/music.scm, gnu/packages/ncurses.scm,
gnu/packages/networking.scm, gnu/packages/nickle.scm,
gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-crypto.scm, gnu/packages/python-web.scm,
gnu/packages/python.scm, gnu/packages/qt.scm,
gnu/packages/ruby.scm, gnu/packages/rust.scm,
gnu/packages/scheme.scm, gnu/packages/serialization.scm,
gnu/packages/shells.scm, gnu/packages/ssh.scm,
gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm,
gnu/packages/tls.scm, gnu/packages/tor.scm,
gnu/packages/version-control.scm, gnu/packages/video.scm,
gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm,
gnu/packages/xfce.scm, gnu/packages/xml.scm,
gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm,
guix/licenses.scm: Likewise.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
6 years agobuild-system/gnu: Fix typo.
Ludovic Courtès [Tue, 20 Mar 2018 16:01:41 +0000 (17:01 +0100)]
build-system/gnu: Fix typo.

* guix/build/gnu-build-system.scm (dump-file-contents): Fix typo in
'string-pad' argument.

6 years agognu: ruby-sanitize: Update to 4.6.3.
Kei Kebreau [Tue, 20 Mar 2018 14:07:00 +0000 (10:07 -0400)]
gnu: ruby-sanitize: Update to 4.6.3.

This fixes CVE-2018-3740.

* gnu/packages/ruby.scm (ruby-sanitize): Update to 4.6.3.

6 years agognu: cdogs-sdl: Update to commit bab20313.
宋文武 [Tue, 20 Mar 2018 13:11:00 +0000 (21:11 +0800)]
gnu: cdogs-sdl: Update to commit bab20313.

Fixes <https://bugs.gnu.org/30623>.

* gnu/packages/games.scm (cdogs-sdl): Update to commit
bab2031369b9ea2dbeb7eedbde10a43dd8ca83db.
[source]: Use git-fetch.

6 years agognu: Add r-dyn.
Sahithi Yarlagadda [Tue, 20 Mar 2018 02:08:55 +0000 (07:38 +0530)]
gnu: Add r-dyn.

* gnu/packages/cran.scm (r-dyn): New variable.

6 years agognu: pigx-bsseq: Update to 0.0.8.
Ricardo Wurmus [Tue, 20 Mar 2018 13:56:05 +0000 (14:56 +0100)]
gnu: pigx-bsseq: Update to 0.0.8.

* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.8.

6 years agoMerge branch 'staging'
Marius Bakke [Tue, 20 Mar 2018 13:13:05 +0000 (14:13 +0100)]
Merge branch 'staging'

6 years agobuild-system/gnu: Dump test suite logs upon 'check' failure.
Ludovic Courtès [Mon, 19 Mar 2018 09:50:05 +0000 (10:50 +0100)]
build-system/gnu: Dump test suite logs upon 'check' failure.

Suggested by Mark H Weaver <mhw@netris.org>.

* guix/build/gnu-build-system.scm (dump-file-contents): New procedure.
(%test-suite-log-regexp): New variable.
(check): Add #:test-suite-log-regexp.  Catch 'invoke-error?' and call
'dump-file-contents' upon error.

6 years agognu: pigx-rnaseq: Update to 0.0.3.
Ricardo Wurmus [Tue, 20 Mar 2018 11:16:37 +0000 (12:16 +0100)]
gnu: pigx-rnaseq: Update to 0.0.3.

* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.3.
[inputs]: Add gzip.

6 years agognu: poppler: Update to 0.63.0.
Marius Bakke [Tue, 20 Mar 2018 10:32:12 +0000 (11:32 +0100)]
gnu: poppler: Update to 0.63.0.

* gnu/packages/pdf.scm (poppler): Update to 0.63.0.

6 years agognu: fontconfig: Update to 2.13.0.
Marius Bakke [Tue, 20 Mar 2018 10:26:50 +0000 (11:26 +0100)]
gnu: fontconfig: Update to 2.13.0.

* gnu/packages/patches/fontconfig-remove-debug-printf.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/fontutils.scm (fontconfig): Update to 2.13.0.
[source](patches): Remove.
[propagated-inputs]: Add UTIL-LINUX.

6 years agognu: freetype: Update to 2.9.
Marius Bakke [Tue, 20 Mar 2018 10:25:30 +0000 (11:25 +0100)]
gnu: freetype: Update to 2.9.

* gnu/packages/fontutils.scm (freetype): Update to 2.9.

6 years agoRevert "gnu: wayland: Disable failing tests."
Ricardo Wurmus [Mon, 19 Mar 2018 08:42:34 +0000 (09:42 +0100)]
Revert "gnu: wayland: Disable failing tests."

This reverts commit e923cee1b9b01ba9f616aec41678a908927111b6.

6 years agoMerge branch 'master' into core-updates
Mark H Weaver [Tue, 20 Mar 2018 04:49:05 +0000 (00:49 -0400)]
Merge branch 'master' into core-updates

6 years agognu: dnsmasq: Fix description typos.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 22:00:01 +0000 (23:00 +0100)]
gnu: dnsmasq: Fix description typos.

* gnu/packages/dns.scm (dnsmasq)[description]: Fix some typos.

6 years agognu: dnsmasq: Update to 2.79.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 21:58:48 +0000 (22:58 +0100)]
gnu: dnsmasq: Update to 2.79.

* gnu/packages/dns.scm (dnsmasq): Update to 2.79.

6 years agognu: certbot: Update to 0.22.1.
Marius Bakke [Tue, 20 Mar 2018 00:40:07 +0000 (01:40 +0100)]
gnu: certbot: Update to 0.22.1.

* gnu/packages/tls.scm (python-acme, certbot): Update to 0.22.1.

6 years agognu: python-cryptography: Update to 2.2.
Marius Bakke [Tue, 20 Mar 2018 00:25:10 +0000 (01:25 +0100)]
gnu: python-cryptography: Update to 2.2.

* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.2.

6 years agognu: imlib2: Update to 1.5.1.
Marius Bakke [Tue, 20 Mar 2018 00:24:48 +0000 (01:24 +0100)]
gnu: imlib2: Update to 1.5.1.

* gnu/packages/image.scm (imlib2): Update to 1.5.1.

6 years agognu: imagemagick: Update to 6.9.9-39.
Marius Bakke [Tue, 20 Mar 2018 00:09:16 +0000 (01:09 +0100)]
gnu: imagemagick: Update to 6.9.9-39.

* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-39.

6 years agognu: zziplib: Correct license.
Marius Bakke [Tue, 20 Mar 2018 00:02:13 +0000 (01:02 +0100)]
gnu: zziplib: Correct license.

* gnu/packages/compression.scm (zziplib)[license]: Add MPL1.1.

6 years agognu: zziplib: Update to 0.13.69.
Marius Bakke [Mon, 19 Mar 2018 23:56:04 +0000 (00:56 +0100)]
gnu: zziplib: Update to 0.13.69.

* gnu/packages/compression.scm (zziplib): Update to 0.13.69.
[home-page]: Use new GitHub home.
[source](uri): Adjust accordingly.
[arguments]: Remove.

6 years agognu: rofi: Update to 1.5.1.
Marius Bakke [Mon, 19 Mar 2018 23:27:07 +0000 (00:27 +0100)]
gnu: rofi: Update to 1.5.1.

* gnu/packages/xdisorg.scm (rofi): Update to 1.5.1.

6 years agoRevert "Revert "gnu: patchelf: Update argument phase.""
Marius Bakke [Mon, 19 Mar 2018 23:20:59 +0000 (00:20 +0100)]
Revert "Revert "gnu: patchelf: Update argument phase.""

This change only affects armhf, which doesn't use PatchELF.  My bad!

This reverts commit b1d096f869ed53b84486855d73c7e9070fdf3ae2.

6 years agoRevert "build-system/meson: Use 'target-arm32?' for armhf-linux case."
Marius Bakke [Mon, 19 Mar 2018 23:03:05 +0000 (00:03 +0100)]
Revert "build-system/meson: Use 'target-arm32?' for armhf-linux case."

This requires adding (guix utils) to the build inputs, and causes too many
rebuilds for now.

This reverts commit 24a2e9172a2d8970d57865c6130f2184385183a3.

6 years agoRevert "gnu: patchelf: Update argument phase."
Marius Bakke [Mon, 19 Mar 2018 22:46:25 +0000 (23:46 +0100)]
Revert "gnu: patchelf: Update argument phase."

It causes too many rebuilds this late in the 'staging' cycle.

This reverts commit c1d1cd817c7ab8d99e962e286c207943765a8e8f.

6 years agognu: uwsgi: Update to 2.0.17 [fixes CVE-2018-7490].
Leo Famulari [Mon, 19 Mar 2018 22:55:50 +0000 (18:55 -0400)]
gnu: uwsgi: Update to 2.0.17 [fixes CVE-2018-7490].

* gnu/packages/web.scm (uwsgi): Update to 2.0.17.
[source]: Use HTTPS URL.

6 years agognu: mcron: Update to 1.1 and deprecate "mcron2".
Ludovic Courtès [Mon, 19 Mar 2018 22:16:48 +0000 (23:16 +0100)]
gnu: mcron: Update to 1.1 and deprecate "mcron2".

* gnu/packages/guile.scm (mcron): Update to 1.1.
[native-inputs]: Add TZDATA-FOR-TESTS.
[arguments]: New field.
(mcron2): Define using 'deprecated-package'.
* gnu/services/mcron.scm: Replace 'mcron2' with 'mcron'.
* doc/guix.texi (Scheduled Job Execution): Likewise.
* gnu/tests/base.scm (%mcron-os): Remove comment about mcron2.

6 years agognu: linux-libre: Update to 4.15.11.
Mark H Weaver [Mon, 19 Mar 2018 22:02:29 +0000 (18:02 -0400)]
gnu: linux-libre: Update to 4.15.11.

* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.11.
(%linux-libre-hash): Update hash.

6 years agognu: linux-libre@4.14: Update to 4.14.28.
Mark H Weaver [Mon, 19 Mar 2018 22:01:49 +0000 (18:01 -0400)]
gnu: linux-libre@4.14: Update to 4.14.28.

* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.28.
(%linux-libre-4.14-hash): Update hash.

6 years agognu: linux-libre@4.9: Update to 4.9.88.
Mark H Weaver [Mon, 19 Mar 2018 22:01:12 +0000 (18:01 -0400)]
gnu: linux-libre@4.9: Update to 4.9.88.

* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.88.

6 years agognu: linux-libre@4.4: Update to 4.4.122.
Mark H Weaver [Mon, 19 Mar 2018 22:00:37 +0000 (18:00 -0400)]
gnu: linux-libre@4.4: Update to 4.4.122.

* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.122.

6 years agognu: weechat: Update to 2.1.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 21:06:24 +0000 (22:06 +0100)]
gnu: weechat: Update to 2.1.

* gnu/packages/irc.scm (weechat): Update to 2.1.

6 years agognu: perl-xml-compile-soap: Update to 3.24.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 18:06:53 +0000 (19:06 +0100)]
gnu: perl-xml-compile-soap: Update to 3.24.

* gnu/packages/xml.scm (perl-xml-compile-soap): Update to 3.24.

6 years agognu: perl-xml-simple: Update to 2.25.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 18:06:33 +0000 (19:06 +0100)]
gnu: perl-xml-simple: Update to 2.25.

* gnu/packages/xml.scm (perl-xml-simple): Update to 2.25.

6 years agognu: perl-math-random-secure: Fix typo.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 17:13:21 +0000 (18:13 +0100)]
gnu: perl-math-random-secure: Fix typo.

* gnu/packages/crypto.scm (perl-math-random-secure)[description]: Fix
the spelling of ‘millennia’.

6 years agobuild-system/meson: Use 'target-arm32?' for armhf-linux case.
Efraim Flashner [Mon, 19 Mar 2018 20:06:22 +0000 (22:06 +0200)]
build-system/meson: Use 'target-arm32?' for armhf-linux case.

* guix/build-system/meson.scm (lower, meson-build): Replace armhf-linux
detection with 'target-arm32?' macro.

6 years agognu: pigx-bsseq: Update to 0.0.7.
Ricardo Wurmus [Mon, 19 Mar 2018 20:03:07 +0000 (21:03 +0100)]
gnu: pigx-bsseq: Update to 0.0.7.

* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.7.
[inputs]: Add coreutils, sed, and grep.

6 years agognu: bismark: Fix references to gunzip.
Ricardo Wurmus [Mon, 19 Mar 2018 19:53:27 +0000 (20:53 +0100)]
gnu: bismark: Fix references to gunzip.

* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to
gunzip executable.
[inputs]: Add gzip.

6 years agognu: pigx-scrnaseq: Update to 0.0.3.
Ricardo Wurmus [Mon, 19 Mar 2018 19:39:53 +0000 (20:39 +0100)]
gnu: pigx-scrnaseq: Update to 0.0.3.

* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.3.
[inputs]: Add coreutils and perl.

6 years agopatchelf: Use 'https' for source uri.
Efraim Flashner [Mon, 19 Mar 2018 19:44:50 +0000 (21:44 +0200)]
patchelf: Use 'https' for source uri.

* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri.

6 years agopatchelf: Use 'https' for source uri.
Efraim Flashner [Mon, 19 Mar 2018 19:44:50 +0000 (21:44 +0200)]
patchelf: Use 'https' for source uri.

* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri.

6 years agognu: patchelf: Update argument phase.
Efraim Flashner [Mon, 19 Mar 2018 19:43:09 +0000 (21:43 +0200)]
gnu: patchelf: Update argument phase.

* gnu/packages/elf.scm (patchelf)[arguments]: Use 'modify-phases'
syntax.  Replace 'system*' with 'invoke'.

6 years agognu: patchelf: Use 'target-arm32?' for armhf-linux case.
Efraim Flashner [Mon, 19 Mar 2018 19:33:29 +0000 (21:33 +0200)]
gnu: patchelf: Use 'target-arm32?' for armhf-linux case.

* gnu/packages/elf.scm (patchelf)[inputs]: Replace armhf-linux detection
logic with 'target-arm32?' macro.
[arguments]: Same.

6 years agognu: python-paramiko: Update to 2.1.5.
Leo Famulari [Mon, 19 Mar 2018 16:17:24 +0000 (12:17 -0400)]
gnu: python-paramiko: Update to 2.1.5.

* gnu/packages/python-crypto.scm (python-paramiko, python2-paramiko):
Update to 2.1.5.

6 years agognu: perl-net-ssleay: Update to 1.85.
Tobias Geerinckx-Rice [Fri, 16 Mar 2018 03:46:22 +0000 (04:46 +0100)]
gnu: perl-net-ssleay: Update to 1.85.

* gnu/packages/tls.scm (perl-net-ssleay): Update to 1.85.

6 years agognu: perl-http-message: Update to 6.15.
Tobias Geerinckx-Rice [Fri, 16 Mar 2018 03:46:45 +0000 (04:46 +0100)]
gnu: perl-http-message: Update to 6.15.

* gnu/packages/web.scm (perl-http-message): Update to 6.15.
[source]: Update URI.
[native-inputs]: Add perl-try-tiny.

6 years agognu: r-minimal, r: Update to 3.4.4.
Tobias Geerinckx-Rice [Thu, 15 Mar 2018 23:00:25 +0000 (00:00 +0100)]
gnu: r-minimal, r: Update to 3.4.4.

There seem to be no dependency updates as far as I could find.

* gnu/packages/statistics.scm (r-minimal): Update to 3.4.4.

6 years agognu: python-pynacl: Update to 1.2.0.
Leo Famulari [Mon, 19 Mar 2018 16:20:22 +0000 (12:20 -0400)]
gnu: python-pynacl: Update to 1.2.0.

* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.2.0.
[native-inputs]: Add python-hypothesis.

6 years agognu: pigx: Update to 0.0.2.
Ricardo Wurmus [Mon, 19 Mar 2018 15:55:08 +0000 (16:55 +0100)]
gnu: pigx: Update to 0.0.2.

* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.2.

6 years agognu: r-rcas: Use ghc-pandoc-citeproc-with-pandoc-1.
Ricardo Wurmus [Mon, 19 Mar 2018 10:51:35 +0000 (11:51 +0100)]
gnu: r-rcas: Use ghc-pandoc-citeproc-with-pandoc-1.

* gnu/packages/bioinformatics.scm (r-rcas)[inputs]: Replace
ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1.

6 years agognu: bash-completion: Update to 2.8.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 13:43:23 +0000 (14:43 +0100)]
gnu: bash-completion: Update to 2.8.

* gnu/packages/bash.scm (bash-completion): Update to 2.8.
* gnu/packages/patches/bash-completion-directories.patch: Update context.

6 years agognu: hdparm: Update to 9.55.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 13:41:47 +0000 (14:41 +0100)]
gnu: hdparm: Update to 9.55.

* gnu/packages/linux.scm (hdparm): Update to 9.55.

6 years agognu: libtirpc: Update to 1.0.3.
Tobias Geerinckx-Rice [Sat, 17 Mar 2018 18:40:48 +0000 (19:40 +0100)]
gnu: libtirpc: Update to 1.0.3.

* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.3.
[source]: Remove patch.
* gnu/packages/patches/libtirpc-missing-headers.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

6 years agognu: libtirpc: Always return #t from phases.
Tobias Geerinckx-Rice [Sat, 17 Mar 2018 18:39:48 +0000 (19:39 +0100)]
gnu: libtirpc: Always return #t from phases.

* gnu/packages/onc-rpc.scm (libtirpc)[arguments]: End phase with #t.

6 years agognu: perl-file-basedir: Update to 0.08.
Tobias Geerinckx-Rice [Sat, 17 Mar 2018 20:03:44 +0000 (21:03 +0100)]
gnu: perl-file-basedir: Update to 0.08.

* gnu/packages/freedesktop.scm (perl-file-basedir): Update to 0.08.

6 years agognu: enlightenment: Update to 0.22.2.
Tobias Geerinckx-Rice [Sat, 17 Mar 2018 17:58:40 +0000 (18:58 +0100)]
gnu: enlightenment: Update to 0.22.2.

* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.2.

6 years agognu: python-oslo.utils: Update to 3.36.0.
Tobias Geerinckx-Rice [Sat, 17 Mar 2018 18:41:51 +0000 (19:41 +0100)]
gnu: python-oslo.utils: Update to 3.36.0.

* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.36.0.

6 years agognu: python-oslo.i18n: Update to 3.20.0.
Tobias Geerinckx-Rice [Sat, 17 Mar 2018 18:41:33 +0000 (19:41 +0100)]
gnu: python-oslo.i18n: Update to 3.20.0.

* gnu/packages/openstack.scm (python-oslo.i18n): Update to 3.20.0.

6 years agognu: r-withr: Update to 2.1.2.
Tobias Geerinckx-Rice [Sat, 17 Mar 2018 18:03:56 +0000 (19:03 +0100)]
gnu: r-withr: Update to 2.1.2.

* gnu/packages/statistics.scm (r-withr): Update to 2.1.2.

6 years agognu: tilda: Update to 1.4.1.
Efraim Flashner [Mon, 19 Mar 2018 12:21:20 +0000 (14:21 +0200)]
gnu: tilda: Update to 1.4.1.

* gnu/packages/terminals.scm (tilda): Update to 1.4.1.
[arguments]: Rename 'autogen phase to 'bootstrap.  Clean up 'bootstrap
phase.

6 years agognu: pigx-chipseq: Update to 0.0.8.
Ricardo Wurmus [Mon, 19 Mar 2018 09:45:40 +0000 (10:45 +0100)]
gnu: pigx-chipseq: Update to 0.0.8.

* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.8.
[inputs]: Add python-magic, python-xlrd, and trim-galore.
[arguments]: Disable tests.

6 years agognu: pigx-scrnaseq: Use pandoc-1.
Ricardo Wurmus [Mon, 19 Mar 2018 09:45:17 +0000 (10:45 +0100)]
gnu: pigx-scrnaseq: Use pandoc-1.

* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.

6 years agognu: pigx-bsseq: Use pandoc-1.
Ricardo Wurmus [Mon, 19 Mar 2018 09:44:55 +0000 (10:44 +0100)]
gnu: pigx-bsseq: Use pandoc-1.

* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.

6 years agognu: pigx-chipseq: Use pandoc-1.
Ricardo Wurmus [Mon, 19 Mar 2018 09:44:32 +0000 (10:44 +0100)]
gnu: pigx-chipseq: Use pandoc-1.

* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.

6 years agognu: pigx-rnaseq: Use pandoc-1.
Ricardo Wurmus [Mon, 19 Mar 2018 09:43:28 +0000 (10:43 +0100)]
gnu: pigx-rnaseq: Use pandoc-1.

* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.

6 years agognu: Add ghc-pandoc-citeproc-with-pandoc-1.
Ricardo Wurmus [Mon, 19 Mar 2018 09:43:06 +0000 (10:43 +0100)]
gnu: Add ghc-pandoc-citeproc-with-pandoc-1.

* gnu/packages/haskell.scm (ghc-pandoc-citeproc-with-pandoc-1): New variable.

6 years agognu: font-dejavu: Return #t from all phases.
Mark H Weaver [Mon, 19 Mar 2018 03:24:33 +0000 (23:24 -0400)]
gnu: font-dejavu: Return #t from all phases.

* gnu/packages/fonts.scm (font-dejavu)[arguments]: Return #t from
the 'install-conf' phase.