Ludovic Courtès [Mon, 1 May 2017 13:45:41 +0000 (15:45 +0200)]
packages: Remove support for PACKAGE-VERSION deprecated syntax.
This syntax had been deprecated since 2016-02-28.
* gnu/packages.scm (%find-package): Remove #:fallback? parameter and handling.
* tests/guix-build.sh: Remove test for "time-1.7" syntax.
* doc/guix.texi (Invoking guix lint): Update 'guix lint' output in example.
Ludovic Courtès [Mon, 1 May 2017 13:51:47 +0000 (15:51 +0200)]
refresh: Report packages using the "@" syntax.
* guix/scripts/refresh.scm (list-dependents)[full-name]: New procedure.
Use 'full-name' instead of 'package-full-name'.
* doc/guix.texi (Invoking guix refresh): Adjust example accordingly.
Roel Janssen [Mon, 1 May 2017 14:18:39 +0000 (16:18 +0200)]
gnu: vcftools: Update to 0.1.15.
* gnu/packages/bioinformatics.scm (vcftools): Update to 0.1.15.
Julien Lepiller [Mon, 1 May 2017 08:11:13 +0000 (10:11 +0200)]
gnu: services: nginx: Fix key verification.
* gnu/services/web.scm (default-nginx-server-config): Fix wrong variable name.
Julien Lepiller [Sun, 30 Apr 2017 09:51:12 +0000 (11:51 +0200)]
gnu: services: Create logs directory.
* gnu/services/web.scm (nginx-activation): Create logs directory so nginx can
log its startup messages before it loads its configuration.
Julien Lepiller [Sun, 30 Apr 2017 09:17:02 +0000 (11:17 +0200)]
gnu: services: nginx: Test certificate presence.
* gnu/services/web.scm (default-nginx-server-config): Test certificate
presence when https is requested at configure time.
ng0 [Sun, 30 Apr 2017 19:09:00 +0000 (19:09 +0000)]
gnu: neomutt: Update to
20170428.
* gnu/packages/mail.scm (neomutt): Update to
20170428.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
Mathieu Othacehe [Sun, 30 Apr 2017 20:19:27 +0000 (22:19 +0200)]
gnu: emacs-mu4e-alert: Update to 1.0.
* gnu/packages/emacs.scm (emacs-mu4e-alert): Update to 1.0.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
Danny Milosavljevic [Tue, 18 Apr 2017 17:42:19 +0000 (19:42 +0200)]
gnu: Add gcc-vc4.
Fixes <https://bugs.gnu.org/26541>.
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add vc4-elf.
* gnu/packages/embedded.scm (gcc-vc4): New variable.
Mathieu Othacehe [Fri, 28 Apr 2017 11:45:13 +0000 (13:45 +0200)]
gnu: guile-git: Update to revision 2.
* gnu/packages/guile.scm (guile-git): Update to revision 2.
[arguments]: remove "ccache -> site-ccache" substitution because it
has been ported upstream.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
Leo Famulari [Sun, 30 Apr 2017 09:34:57 +0000 (05:34 -0400)]
gnu: python-llfuse: Update to 1.2.
* gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.2.
Leo Famulari [Sun, 30 Apr 2017 09:34:37 +0000 (05:34 -0400)]
gnu: fuse: Update to 2.9.7.
* gnu/packages/linux.scm (fuse): Update to 2.9.7.
Leo Famulari [Sun, 30 Apr 2017 20:44:15 +0000 (16:44 -0400)]
gnu: radicale: Update to 1.1.2 [fixes CVE-2017-8342].
* gnu/packages/dav.scm (radicale): Update to 1.1.2.
Leo Famulari [Sun, 30 Apr 2017 19:07:30 +0000 (15:07 -0400)]
Revert "gnu: Move netsurf to web-browsers.scm."
This change caused building Guix to fail with:
393: 1 [eval #<memoized glib-or-gtk-build-system> (# "3.6" "netsurf" . #)]
This reverts commit
a39ee1accb384fa4747a2a14d44616557419087f.
Kei Kebreau [Sat, 29 Apr 2017 22:08:25 +0000 (18:08 -0400)]
gnu: Move netsurf to web-browsers.scm.
* gnu/packages/web.scm: Move netsurf...
* gnu/packages/web-browsers.scm: ...here.
Ricardo Wurmus [Sun, 30 Apr 2017 11:01:20 +0000 (13:01 +0200)]
gnu: glibc/linux: Fix build of glibc-intermediate.
This is a follow-up to commit
b2fd8f63679aa4f244c36fdca62f23c00b8eded9.
* gnu/packages/base.scm (glibc/linux)[arguments]: Take patch from either
native-inputs or just inputs; fix syntax error; report errors on patch
failure.
Efraim Flashner [Sun, 30 Apr 2017 09:24:08 +0000 (12:24 +0300)]
gnu: femtolisp: Remove aarch64-linux from supported-architectures.
* gnu/packages/lisp.scm (femtolisp)[supported-systems]: Remove
aarch64-linux from supported-systems.
Thomas Danckaert [Thu, 27 Apr 2017 15:06:53 +0000 (17:06 +0200)]
gnu: Add netcdf-fortran.
* gnu/packages/maths.scm (netcdf-fortran): New variable.
Efraim Flashner [Sun, 30 Apr 2017 08:03:49 +0000 (11:03 +0300)]
gnu: jemalloc: Disable transparent huge pages on non-Intel systems.
* gnu/packages/jemalloc.scm (jemalloc)[arguments]: On non-Intel systems
add '--disable-thp' to #:configure-flags. Adjust #:phases to remove
offending test which incorrectly tests transparent huge pages.
Christopher Allan Webber [Fri, 28 Apr 2017 19:29:16 +0000 (14:29 -0500)]
python-sphinxcontrib-programoutput: Update to 0.10.
* gnu/packages/python.scm (python-sphinxcontrib-programoutput): Update to 0.10.
Marius Bakke [Sat, 29 Apr 2017 19:55:28 +0000 (21:55 +0200)]
gnu: xapian: Update to 1.4.4.
* gnu/packages/search.scm (xapian): Update to 1.4.4.
Ricardo Wurmus [Wed, 26 Apr 2017 11:03:48 +0000 (13:03 +0200)]
gnu: glibc/linux: Fix runtime crashes on i686 systems.
* gnu/packages/patches/glibc-memchr-overflow-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)[native-inputs]:
Add the patch conditionally for i686 systems.
* gnu/packages/base.scm (glibc/linux)[native-inputs]: Add the patch
conditionally for i686 systems.
[arguments]: Apply the patch conditionally on i686 systems.
Efraim Flashner [Sat, 29 Apr 2017 20:31:39 +0000 (23:31 +0300)]
gnu: lsof: Update to 4.89.
* gnu/packages/lsof.scm (lsof): Update to 4.89.
Efraim Flashner [Sat, 29 Apr 2017 20:39:53 +0000 (23:39 +0300)]
gnu: lsof: Shorten 'install phase.
* gnu/packages/lsof.scm (lsof)[arguments]: Use 'install-file during the
'install phase.
Efraim Flashner [Sat, 29 Apr 2017 20:23:54 +0000 (23:23 +0300)]
gnu: lsof: Use 'modify-phases' syntax.
* gnu/packages/lsof.scm (lsof)[arguments]: Use 'modify-phases' syntax.
Efraim Flashner [Sat, 29 Apr 2017 20:20:47 +0000 (23:20 +0300)]
gnu: lsof: Add to mirror list.
* gnu/packages/lsof.scm (lsof)[source]: Add to mirror list.
Efraim Flashner [Sat, 29 Apr 2017 19:53:43 +0000 (22:53 +0300)]
gnu: r-genomeinfodbdata: Fix source url.
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata)[source]: Use
source uri and not bioconductor-uri shortener.
Leo Famulari [Sat, 29 Apr 2017 15:55:33 +0000 (11:55 -0400)]
gnu: freetype: Fix CVE-2017-{8105,8287}.
* gnu/packages/patches/freetype-CVE-2017-8105.patch,
gnu/packages/patches/freetype-CVE-2017-8287.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/fontutils.scm (freetype)[replacement]: New field.
(freetype/fixed): New variable.
Julien Lepiller [Sat, 22 Apr 2017 09:11:53 +0000 (11:11 +0200)]
gnu: ocaml-qtest: Use ocaml-qcheck.
* gnu/packages/ocaml.scm (ocaml-qtest)[propagated-inputs]: Add ocaml-qcheck.
Julien Lepiller [Sat, 22 Apr 2017 09:09:27 +0000 (11:09 +0200)]
gnu: Add ocaml-qcheck.
* gnu/packages/ocaml.scm (ocaml-qcheck): New variable.
Danny Milosavljevic [Fri, 28 Apr 2017 12:49:42 +0000 (14:49 +0200)]
gnu: python-openid: Fix package.
Fixes <https://bugs.gnu.org/26692>.
* gnu/packages/python.scm (python-openid)[arguments]: Replace 'check phase.
[propagated-inputs]: Add python-defusedxml.
[native-inputs]: Add python-psycopg2, python-django.
Leo Famulari [Sat, 29 Apr 2017 05:15:20 +0000 (01:15 -0400)]
gnu: ghostscript-with-cups: Avoid inheriting replacement field.
This is a followup to commit
a01f15759a00503101baa23af87cbd6095a1fbd6.
* gnu/packages/cups.scm (ghostscript/cups)[replacement]: New field.
Tobias Geerinckx-Rice [Fri, 28 Apr 2017 23:00:10 +0000 (01:00 +0200)]
gnu: radeontop: Update to 1.0.
* gnu/packages/linux.scm (radeontop): Update to 1.0.
[inputs]: Add libxcb.
Leo Famulari [Fri, 28 Apr 2017 20:34:05 +0000 (16:34 -0400)]
gnu: ghostscript: Fix CVE-2017-8291.
* gnu/packages/patches/ghostscript-CVE-2017-8291.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field.
(ghostscript/fixed): New variable.
(ghostscript-with-x)[replacement]: New field.
Arun Isaac [Fri, 28 Apr 2017 16:36:58 +0000 (22:06 +0530)]
gnu: youtube-dl: Update to 2017.04.28.
* gnu/packages/video.scm (youtube-dl): Update to 2017.04.28.
Ricardo Wurmus [Thu, 27 Apr 2017 08:42:21 +0000 (10:42 +0200)]
gnu: Add enigma.
* gnu/packages/games.scm (enigma): New variable.
Ricardo Wurmus [Thu, 27 Apr 2017 06:52:04 +0000 (08:52 +0200)]
gnu: Add xerces-c.
* gnu/packages/xml.scm (xerces-c): New variable.
Kei Kebreau [Fri, 28 Apr 2017 15:31:47 +0000 (11:31 -0400)]
gnu: schismtracker: Update to
20170420.
* gnu/packages/music.scm (schismtracker): Update to
20170420.
David Thompson [Fri, 28 Apr 2017 13:20:37 +0000 (09:20 -0400)]
gnu: awscli: Add python-pyyaml input.
Without this input, 'aws ec2 import-key-pair' doesn't work.
* gnu/packages/python.scm (awscli)[propagated-inputs]: Add python-pyyaml.
宋文武 [Fri, 28 Apr 2017 13:01:01 +0000 (21:01 +0800)]
gnu: virt-manager: Update to 1.4.1.
* gnu/packages/qemu.scm (virt-manager): Update to 1.4.1.
宋文武 [Fri, 28 Apr 2017 12:53:15 +0000 (20:53 +0800)]
gnu: python-libvirt: Update to 3.2.0.
* gnu/packages/qemu.scm (python-libvirt, python2-libvirt): Update to 3.2.0.
宋文武 [Fri, 28 Apr 2017 12:23:56 +0000 (20:23 +0800)]
gnu: libvirt-glib: Update to 1.0.0.
* gnu/packages/qemu.scm (libvirt-glib): Update to 1.0.0.
宋文武 [Fri, 28 Apr 2017 12:19:20 +0000 (20:19 +0800)]
gnu: libvirt: Update to 3.2.0.
* gnu/packages/qemu.scm (libvirt): Update to 3.2.0.
Roel Janssen [Fri, 28 Apr 2017 08:53:56 +0000 (10:53 +0200)]
gnu: r-preprocesscore: Update to 1.38.0.
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.0.
Roel Janssen [Fri, 28 Apr 2017 08:53:34 +0000 (10:53 +0200)]
gnu: r-msnid: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.10.0.
Roel Janssen [Fri, 28 Apr 2017 08:53:17 +0000 (10:53 +0200)]
gnu: r-msnbase: Update to 2.2.0.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.2.0.
Roel Janssen [Fri, 28 Apr 2017 08:53:01 +0000 (10:53 +0200)]
gnu: r-pcamethods: Update to 1.68.0.
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.68.0.
Roel Janssen [Fri, 28 Apr 2017 08:52:43 +0000 (10:52 +0200)]
gnu: r-mzid: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.14.0.
Roel Janssen [Fri, 28 Apr 2017 08:51:53 +0000 (10:51 +0200)]
gnu: r-vsn: Update to 3.44.0.
* gnu/packages/bioinformatics.scm (r-vsn):
[source]: Update to 3.44.0,
[propagated-inputs]: Add r-hexbin.
Roel Janssen [Fri, 28 Apr 2017 08:51:32 +0000 (10:51 +0200)]
gnu: r-affy: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.54.0.
Roel Janssen [Fri, 28 Apr 2017 08:51:14 +0000 (10:51 +0200)]
gnu: r-affyio: Update to 1.46.0.
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.46.0.
Roel Janssen [Fri, 28 Apr 2017 08:50:54 +0000 (10:50 +0200)]
gnu: r-mzr: Update to 2.10.0.
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.10.0.
Roel Janssen [Fri, 28 Apr 2017 08:50:40 +0000 (10:50 +0200)]
gnu: r-protgenerics: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.8.0.
Roel Janssen [Fri, 28 Apr 2017 08:50:23 +0000 (10:50 +0200)]
gnu: r-sva: Update to 3.24.0.
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.0.
Roel Janssen [Fri, 28 Apr 2017 08:50:06 +0000 (10:50 +0200)]
gnu: r-copywriter: Update to 2.8.0.
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.0.
Roel Janssen [Fri, 28 Apr 2017 08:49:47 +0000 (10:49 +0200)]
gnu: r-chipseq: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.26.0.
Roel Janssen [Fri, 28 Apr 2017 08:49:16 +0000 (10:49 +0200)]
gnu: r-rhdf5: Update to 2.20.0.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.20.0.
Roel Janssen [Fri, 28 Apr 2017 08:48:57 +0000 (10:48 +0200)]
gnu: r-tximport: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.4.0.
Roel Janssen [Fri, 28 Apr 2017 08:47:53 +0000 (10:47 +0200)]
gnu: r-mutationalpatterns: Update to 1.2.0.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns):
[source]: Update to 1.2.0,
[propagated-inputs]: Add r-bsgenome-hsapiens-1000genomes-hs37d5,
r-bsgenome-hsapiens-ucsc-hg19.
Roel Janssen [Fri, 28 Apr 2017 08:47:10 +0000 (10:47 +0200)]
gnu: r-bamsignals: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.8.0.
Roel Janssen [Fri, 28 Apr 2017 08:46:55 +0000 (10:46 +0200)]
gnu: r-rhtslib: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.8.0.
Roel Janssen [Fri, 28 Apr 2017 08:46:38 +0000 (10:46 +0200)]
gnu: r-zlibbioc: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.22.0.
Roel Janssen [Fri, 28 Apr 2017 08:46:18 +0000 (10:46 +0200)]
gnu: r-motifrg: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.20.0.
Roel Janssen [Fri, 28 Apr 2017 08:45:59 +0000 (10:45 +0200)]
gnu: r-seqlogo: Update to 1.42.0.
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.42.0.
Roel Janssen [Fri, 28 Apr 2017 08:45:43 +0000 (10:45 +0200)]
gnu: r-genomation: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.8.0.
Roel Janssen [Fri, 28 Apr 2017 08:45:28 +0000 (10:45 +0200)]
gnu: r-seqpattern: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.8.0.
Roel Janssen [Fri, 28 Apr 2017 08:45:10 +0000 (10:45 +0200)]
gnu: r-impute: Update to 1.50.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.50.0.
Roel Janssen [Fri, 28 Apr 2017 08:44:51 +0000 (10:44 +0200)]
gnu: r-bsgenome: Update to 1.44.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.44.0.
Roel Janssen [Fri, 28 Apr 2017 08:44:32 +0000 (10:44 +0200)]
gnu: r-topgo: Update to 2.28.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.28.0.
Roel Janssen [Fri, 28 Apr 2017 08:44:14 +0000 (10:44 +0200)]
gnu: r-graph: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.54.0.
Roel Janssen [Fri, 28 Apr 2017 08:43:58 +0000 (10:43 +0200)]
gnu: r-genomicfeatures: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.0.
Roel Janssen [Fri, 28 Apr 2017 08:43:40 +0000 (10:43 +0200)]
gnu: r-rtracklayer: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.0.
Roel Janssen [Fri, 28 Apr 2017 08:43:21 +0000 (10:43 +0200)]
gnu: r-genomicalignments: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.0.
Roel Janssen [Fri, 28 Apr 2017 08:42:25 +0000 (10:42 +0200)]
gnu: r-summarizedexperiment: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment):
[source]: Update to 1.6.0,
[propagated-inputs]: Add r-delayedarray.
Roel Janssen [Fri, 28 Apr 2017 08:42:01 +0000 (10:42 +0200)]
gnu: r-rsamtools: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.28.0.
Roel Janssen [Fri, 28 Apr 2017 08:41:43 +0000 (10:41 +0200)]
gnu: r-biostrings: Update to 2.44.0.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.0.
Roel Janssen [Fri, 28 Apr 2017 08:41:25 +0000 (10:41 +0200)]
gnu: r-biocparallel: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.0.
Roel Janssen [Fri, 28 Apr 2017 08:41:07 +0000 (10:41 +0200)]
gnu: r-biomart: Update to 2.32.0.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.0.
Roel Janssen [Fri, 28 Apr 2017 08:40:44 +0000 (10:40 +0200)]
gnu: r-annotationdbi: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.0.
Roel Janssen [Fri, 28 Apr 2017 08:40:19 +0000 (10:40 +0200)]
gnu: r-biobase: Update to 2.36.0.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.0.
Roel Janssen [Fri, 28 Apr 2017 08:40:00 +0000 (10:40 +0200)]
gnu: r-genomicranges: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.0.
Roel Janssen [Fri, 28 Apr 2017 08:39:42 +0000 (10:39 +0200)]
gnu: r-xvector: Update to 0.16.0.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.16.0.
Roel Janssen [Fri, 28 Apr 2017 08:39:25 +0000 (10:39 +0200)]
gnu: r-limma: Update to 3.32.0.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.0.
Roel Janssen [Fri, 28 Apr 2017 08:39:04 +0000 (10:39 +0200)]
gnu: r-variantannotation: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.0.
Roel Janssen [Fri, 28 Apr 2017 08:38:44 +0000 (10:38 +0200)]
gnu: r-edger: Update to 3.18.0.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.18.0.
Roel Janssen [Fri, 28 Apr 2017 08:37:42 +0000 (10:37 +0200)]
gnu: r-genomeinfodb: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): [source] Update to 1.12.0,
[propagated-inputs]: Add r-genomeinfodbdata.
Roel Janssen [Fri, 28 Apr 2017 08:37:15 +0000 (10:37 +0200)]
gnu: r-iranges: Update to 2.10.0.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.0.
Roel Janssen [Fri, 28 Apr 2017 08:36:50 +0000 (10:36 +0200)]
gnu: r-s4vectors: Update to 0.14.0.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.0.
Roel Janssen [Fri, 28 Apr 2017 08:36:24 +0000 (10:36 +0200)]
gnu: r-dnacopy: Update to 1.50.0.
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.0.
Roel Janssen [Fri, 28 Apr 2017 08:36:02 +0000 (10:36 +0200)]
gnu: r-bioccheck: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.12.0.
Roel Janssen [Fri, 28 Apr 2017 08:33:54 +0000 (10:33 +0200)]
gnu: r-biocstyle: Update to 2.4.0.
* gnu/packages/bioinformatics.scm (r-biocstyle): [source] Update to 2.4.0.
[propagated-inputs]: Add r-bookdown, r-knitr, r-rmarkdown, r-yaml.
Roel Janssen [Fri, 28 Apr 2017 08:33:26 +0000 (10:33 +0200)]
gnu: r-biocviews: Update to 1.44.0.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.44.0.
Roel Janssen [Fri, 28 Apr 2017 08:32:58 +0000 (10:32 +0200)]
gnu: r-biocinstaller: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.26.0.
Roel Janssen [Fri, 28 Apr 2017 08:32:37 +0000 (10:32 +0200)]
gnu: r-biocgenerics: Update to 0.22.0.
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.22.0.
Roel Janssen [Fri, 28 Apr 2017 08:32:10 +0000 (10:32 +0200)]
gnu: r-grohmm: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.10.0.
Roel Janssen [Fri, 28 Apr 2017 08:31:50 +0000 (10:31 +0200)]
gnu: r-systempiper: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.10.0.
Roel Janssen [Fri, 28 Apr 2017 08:31:29 +0000 (10:31 +0200)]
gnu: r-shortread: Update to 1.34.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.34.0.
Roel Janssen [Fri, 28 Apr 2017 08:31:05 +0000 (10:31 +0200)]
gnu: r-gostats: Update to 2.42.0.
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.42.0.
Roel Janssen [Fri, 28 Apr 2017 08:30:44 +0000 (10:30 +0200)]
gnu: r-category: Update to 2.42.0.
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.0.
Roel Janssen [Fri, 28 Apr 2017 08:30:20 +0000 (10:30 +0200)]
gnu: r-gseabase: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.38.0.
HCoop / jackhill / guix / guix.git / log