jackhill/guix/guix.git
6 years agoMerge branch 'master' into core-updates
Ricardo Wurmus [Sat, 2 Jun 2018 11:44:43 +0000 (13:44 +0200)]
Merge branch 'master' into core-updates

6 years agognu: r-scater: Update to 1.8.0.
Ricardo Wurmus [Sat, 2 Jun 2018 11:42:05 +0000 (13:42 +0200)]
gnu: r-scater: Update to 1.8.0.

* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.0.
[propagated-inputs]: Add r-delayedarray ad r-delayedmatrixstats; remove
r-matrixstats and r-biomart.

6 years agoimport: cran: Update to Bioconductor 3.7.
Ricardo Wurmus [Sat, 2 Jun 2018 11:36:26 +0000 (13:36 +0200)]
import: cran: Update to Bioconductor 3.7.

* guix/import/cran.scm (%bioconductor-version): Update to 3.7.

6 years agognu: r-mvtnorm: Update to 1.0-8.
Ricardo Wurmus [Sat, 2 Jun 2018 11:36:09 +0000 (13:36 +0200)]
gnu: r-mvtnorm: Update to 1.0-8.

* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-8.

6 years agognu: r-rgraphviz: Update to 2.24.0.
Ricardo Wurmus [Sat, 2 Jun 2018 11:35:58 +0000 (13:35 +0200)]
gnu: r-rgraphviz: Update to 2.24.0.

* gnu/packages/graph.scm (r-rgraphviz): Update to 2.24.0.

6 years agognu: r-scran: Update to 1.8.2.
Ricardo Wurmus [Sat, 2 Jun 2018 11:35:20 +0000 (13:35 +0200)]
gnu: r-scran: Update to 1.8.2.

* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.2.
[propagated-inputs]: Remove r-zoo; add r-delayedmatrixstats and r-delayedarray.

6 years agognu: r-delayedmatrixstats: Update to 1.2.0.
Ricardo Wurmus [Sat, 2 Jun 2018 11:34:59 +0000 (13:34 +0200)]
gnu: r-delayedmatrixstats: Update to 1.2.0.

* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.2.0.

6 years agognu: r-singlecellexperiment: Update to 1.2.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:16:59 +0000 (12:16 +0200)]
gnu: r-singlecellexperiment: Update to 1.2.0.

* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.2.0.

6 years agognu: r-beachmat: Update to 1.2.1.
Ricardo Wurmus [Sat, 2 Jun 2018 10:16:42 +0000 (12:16 +0200)]
gnu: r-beachmat: Update to 1.2.1.

* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.2.1.
[inputs]: Add zlib.

6 years agognu: r-rhdf5lib: Update to 1.2.1.
Ricardo Wurmus [Sat, 2 Jun 2018 10:16:03 +0000 (12:16 +0200)]
gnu: r-rhdf5lib: Update to 1.2.1.

* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.2.1.
[arguments]: Adjust substitutions.

6 years agognu: r-hdf5array: Update to 1.8.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:15:39 +0000 (12:15 +0200)]
gnu: r-hdf5array: Update to 1.8.0.

* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.0.

6 years agognu: r-qvalue: Update to 2.12.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:15:23 +0000 (12:15 +0200)]
gnu: r-qvalue: Update to 2.12.0.

* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.12.0.

6 years agognu: r-hitc: Update to 1.24.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:15:07 +0000 (12:15 +0200)]
gnu: r-hitc: Update to 1.24.0.

* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.24.0.

6 years agognu: r-fithic: Update to 1.6.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:14:52 +0000 (12:14 +0200)]
gnu: r-fithic: Update to 1.6.0.

* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.6.0.

6 years agognu: r-sushi: Update to 1.18.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:14:23 +0000 (12:14 +0200)]
gnu: r-sushi: Update to 1.18.0.

* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.18.0.

6 years agognu: r-gwascat: Update to 2.12.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:14:06 +0000 (12:14 +0200)]
gnu: r-gwascat: Update to 2.12.0.

* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.12.0.

6 years agognu: r-gviz: Update to 1.24.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:13:51 +0000 (12:13 +0200)]
gnu: r-gviz: Update to 1.24.0.

* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.24.0.

6 years agognu: r-gqtlstats: Update to 1.12.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:13:23 +0000 (12:13 +0200)]
gnu: r-gqtlstats: Update to 1.12.0.

* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.12.0.
[propagated-inputs]: Add r-homo-sapiens; remove r-ldblock.

6 years agognu: r-ldblock: Update to 1.10.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:12:54 +0000 (12:12 +0200)]
gnu: r-ldblock: Update to 1.10.0.

* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.10.0.
[propagated-inputs]: Add r-biocgenerics.

6 years agognu: r-erma: Update to 0.12.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:12:10 +0000 (12:12 +0200)]
gnu: r-erma: Update to 0.12.0.

* gnu/packages/bioinformatics.scm (r-erma): Update to 0.12.0.
[propagated-inputs]: Remove r-foreach; add r-biocparallel, r-genomeinfodb, and
r-iranges.

6 years agognu: r-snpstats: Update to 1.30.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:11:55 +0000 (12:11 +0200)]
gnu: r-snpstats: Update to 1.30.0.

* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.30.0.

6 years agognu: r-gqtlbase: Update to 1.12.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:11:33 +0000 (12:11 +0200)]
gnu: r-gqtlbase: Update to 1.12.0.

* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.12.0.

6 years agognu: r-ggbio: Update to 1.28.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:11:18 +0000 (12:11 +0200)]
gnu: r-ggbio: Update to 1.28.0.

* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.0.

6 years agognu: r-biovizbase: Update to 1.28.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:11:02 +0000 (12:11 +0200)]
gnu: r-biovizbase: Update to 1.28.0.

* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.0.

6 years agognu: r-organismdbi: Update to 1.22.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:10:47 +0000 (12:10 +0200)]
gnu: r-organismdbi: Update to 1.22.0.

* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.22.0.

6 years agognu: r-ensembldb: Update to 2.4.1.
Ricardo Wurmus [Sat, 2 Jun 2018 10:10:18 +0000 (12:10 +0200)]
gnu: r-ensembldb: Update to 2.4.1.

* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.4.1.
[propagated-inputs]: Remove r-annotationhub.

6 years agognu: r-dirichletmultinomial: Update to 1.22.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:10:00 +0000 (12:10 +0200)]
gnu: r-dirichletmultinomial: Update to 1.22.0.

* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.22.0.

6 years agognu: r-complexheatmap: Update to 1.18.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:09:42 +0000 (12:09 +0200)]
gnu: r-complexheatmap: Update to 1.18.0.

* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.18.0.

6 years agognu: r-genomicfiles: Update to 1.16.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:09:23 +0000 (12:09 +0200)]
gnu: r-genomicfiles: Update to 1.16.0.

* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.16.0.

6 years agognu: r-gage: Update to 2.30.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:09:08 +0000 (12:09 +0200)]
gnu: r-gage: Update to 2.30.0.

* gnu/packages/bioinformatics.scm (r-gage): Update to 2.30.0.

6 years agognu: r-keggrest: Update to 1.20.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:08:50 +0000 (12:08 +0200)]
gnu: r-keggrest: Update to 1.20.0.

* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.0.

6 years agognu: r-fastseg: Update to 1.26.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:08:27 +0000 (12:08 +0200)]
gnu: r-fastseg: Update to 1.26.0.

* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.26.0.

6 years agognu: r-annotationhub: Update to 2.12.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:08:09 +0000 (12:08 +0200)]
gnu: r-annotationhub: Update to 2.12.0.

* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.0.

6 years agognu: r-interactivedisplaybase: Update to 1.18.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:07:49 +0000 (12:07 +0200)]
gnu: r-interactivedisplaybase: Update to 1.18.0.

* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.18.0.

6 years agognu: r-edaseq: Update to 2.14.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:07:38 +0000 (12:07 +0200)]
gnu: r-edaseq: Update to 2.14.0.

* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.14.0.

6 years agognu: r-deseq: Update to 1.32.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:07:22 +0000 (12:07 +0200)]
gnu: r-deseq: Update to 1.32.0.

* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.32.0.

6 years agognu: r-aroma-light: Update to 3.10.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:07:01 +0000 (12:07 +0200)]
gnu: r-aroma-light: Update to 3.10.0.

* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.10.0.

6 years agognu: r-msnid: Update to 1.14.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:06:43 +0000 (12:06 +0200)]
gnu: r-msnid: Update to 1.14.0.

* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.14.0.

6 years agognu: r-msnbase: Update to 2.6.1.
Ricardo Wurmus [Sat, 2 Jun 2018 10:06:13 +0000 (12:06 +0200)]
gnu: r-msnbase: Update to 2.6.1.

* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.1.
[propagated-inputs]: Add r-mass and r-scales.

6 years agognu: r-pcamethods: Update to 1.72.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:05:43 +0000 (12:05 +0200)]
gnu: r-pcamethods: Update to 1.72.0.

* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.72.0.

6 years agognu: r-mzid: Update to 1.18.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:05:28 +0000 (12:05 +0200)]
gnu: r-mzid: Update to 1.18.0.

* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.18.0.

6 years agognu: r-vsn: Update to 3.48.1.
Ricardo Wurmus [Sat, 2 Jun 2018 10:05:08 +0000 (12:05 +0200)]
gnu: r-vsn: Update to 3.48.1.

* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.48.1.

6 years agognu: r-affy: Update to 1.58.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:04:46 +0000 (12:04 +0200)]
gnu: r-affy: Update to 1.58.0.

* gnu/packages/bioinformatics.scm (r-affy): Update to 1.58.0.
[inputs]: Add zlib.

6 years agognu: r-affyio: Update to 1.50.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:04:28 +0000 (12:04 +0200)]
gnu: r-affyio: Update to 1.50.0.

* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.50.0.

6 years agognu: r-mzr: Update to 2.14.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:04:03 +0000 (12:04 +0200)]
gnu: r-mzr: Update to 2.14.0.

* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.14.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-rhdf5lib.

6 years agognu: r-protgenerics: Update to 1.12.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:02:10 +0000 (12:02 +0200)]
gnu: r-protgenerics: Update to 1.12.0.

* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.12.0.

6 years agognu: r-sva: Update to 3.28.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:01:57 +0000 (12:01 +0200)]
gnu: r-sva: Update to 3.28.0.

* gnu/packages/bioinformatics.scm (r-sva): Update to 3.28.0.

6 years agognu: r-methylkit: Update to 1.6.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:01:43 +0000 (12:01 +0200)]
gnu: r-methylkit: Update to 1.6.0.

* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.0.

6 years agognu: r-copywriter: Update to 2.12.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:01:15 +0000 (12:01 +0200)]
gnu: r-copywriter: Update to 2.12.0.

* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.12.0.

6 years agognu: r-chipseq: Update to 1.30.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:01:03 +0000 (12:01 +0200)]
gnu: r-chipseq: Update to 1.30.0.

* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.30.0.

6 years agognu: r-annotationfilter: Update to 1.4.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:00:50 +0000 (12:00 +0200)]
gnu: r-annotationfilter: Update to 1.4.0.

* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.4.0.

6 years agognu: r-rhdf5: Update to 2.24.0.
Ricardo Wurmus [Sat, 2 Jun 2018 10:00:10 +0000 (12:00 +0200)]
gnu: r-rhdf5: Update to 2.24.0.

* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.24.0.
[arguments]: Remove.
[propagated-inputs]: Remove r-zlibbioc; add r-rhdf5lib.
[inputs]: Remove perl.

6 years agognu: r-tximport: Update to 1.8.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:59:53 +0000 (11:59 +0200)]
gnu: r-tximport: Update to 1.8.0.

* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.8.0.

6 years agognu: r-mutationalpatterns: Update to 1.6.1.
Ricardo Wurmus [Sat, 2 Jun 2018 09:59:37 +0000 (11:59 +0200)]
gnu: r-mutationalpatterns: Update to 1.6.1.

* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.6.1.

6 years agognu: r-bamsignals: Update to 1.12.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:59:23 +0000 (11:59 +0200)]
gnu: r-bamsignals: Update to 1.12.0.

* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.0.

6 years agognu: r-rhtslib: Update to 1.12.1.
Ricardo Wurmus [Sat, 2 Jun 2018 09:58:55 +0000 (11:58 +0200)]
gnu: r-rhtslib: Update to 1.12.1.

* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.12.1.
[native-inputs]: Remove autoconf.

6 years agognu: r-zlibbioc: Update to 1.26.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:56:48 +0000 (11:56 +0200)]
gnu: r-zlibbioc: Update to 1.26.0.

* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.26.0.

6 years agognu: r-motifrg: Update to 1.24.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:56:34 +0000 (11:56 +0200)]
gnu: r-motifrg: Update to 1.24.0.

* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.24.0.

6 years agognu: r-seqlogo: Update to 1.46.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:56:18 +0000 (11:56 +0200)]
gnu: r-seqlogo: Update to 1.46.0.

* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.46.0.

6 years agognu: r-genomation: Update to 1.12.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:56:00 +0000 (11:56 +0200)]
gnu: r-genomation: Update to 1.12.0.

* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.12.0.

6 years agognu: r-seqpattern: Update to 1.12.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:55:39 +0000 (11:55 +0200)]
gnu: r-seqpattern: Update to 1.12.0.

* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.12.0.

6 years agognu: r-impute: Update to 1.54.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:55:26 +0000 (11:55 +0200)]
gnu: r-impute: Update to 1.54.0.

* gnu/packages/bioinformatics.scm (r-impute): Update to 1.54.0.

6 years agognu: r-bsgenome: Update to 1.48.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:55:10 +0000 (11:55 +0200)]
gnu: r-bsgenome: Update to 1.48.0.

* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.48.0.

6 years agognu: r-topgo: Update to 2.32.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:54:55 +0000 (11:54 +0200)]
gnu: r-topgo: Update to 2.32.0.

* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.32.0.

6 years agognu: r-graph: Update to 1.58.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:54:40 +0000 (11:54 +0200)]
gnu: r-graph: Update to 1.58.0.

* gnu/packages/bioinformatics.scm (r-graph): Update to 1.58.0.

6 years agognu: r-genomicfeatures: Update to 1.32.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:54:15 +0000 (11:54 +0200)]
gnu: r-genomicfeatures: Update to 1.32.0.

* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.0.
[propagated-inputs]: Remove r-rmysql.

6 years agognu: r-rtracklayer: Update to 1.40.2.
Ricardo Wurmus [Sat, 2 Jun 2018 09:53:35 +0000 (11:53 +0200)]
gnu: r-rtracklayer: Update to 1.40.2.

* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.2.
[native-inputs]: Add pkg-config.

6 years agognu: r-genomicalignments: Update to 1.16.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:53:04 +0000 (11:53 +0200)]
gnu: r-genomicalignments: Update to 1.16.0.

* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.16.0.

6 years agognu: r-summarizedexperiment: Update to 1.10.1.
Ricardo Wurmus [Sat, 2 Jun 2018 09:52:44 +0000 (11:52 +0200)]
gnu: r-summarizedexperiment: Update to 1.10.1.

* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.10.1.

6 years agognu: r-delayedarray: Update to 0.6.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:52:17 +0000 (11:52 +0200)]
gnu: r-delayedarray: Update to 0.6.0.

* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.0.
[propagated-inputs]: Add r-biocparallel.

6 years agognu: r-rsamtools: Update to 1.32.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:51:57 +0000 (11:51 +0200)]
gnu: r-rsamtools: Update to 1.32.0.

* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.32.0.

6 years agognu: r-biostrings: Update to 2.48.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:51:35 +0000 (11:51 +0200)]
gnu: r-biostrings: Update to 2.48.0.

* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.48.0.

6 years agognu: r-biocparallel: Update to 1.14.1.
Ricardo Wurmus [Sat, 2 Jun 2018 09:51:12 +0000 (11:51 +0200)]
gnu: r-biocparallel: Update to 1.14.1.

* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.14.1.

6 years agognu: r-biomart: Update to 2.36.1.
Ricardo Wurmus [Sat, 2 Jun 2018 09:50:56 +0000 (11:50 +0200)]
gnu: r-biomart: Update to 2.36.1.

* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.36.1.

6 years agognu: r-annotationdbi: Update to 1.42.1.
Ricardo Wurmus [Sat, 2 Jun 2018 09:50:34 +0000 (11:50 +0200)]
gnu: r-annotationdbi: Update to 1.42.1.

* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.42.1.

6 years agognu: r-biobase: Update to 2.40.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:50:13 +0000 (11:50 +0200)]
gnu: r-biobase: Update to 2.40.0.

* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.40.0.

6 years agognu: r-genomicranges: Update to 1.32.3.
Ricardo Wurmus [Sat, 2 Jun 2018 09:49:57 +0000 (11:49 +0200)]
gnu: r-genomicranges: Update to 1.32.3.

* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.3.

6 years agognu: r-xvector: Update to 0.20.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:49:44 +0000 (11:49 +0200)]
gnu: r-xvector: Update to 0.20.0.

* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.20.0.

6 years agognu: r-limma: Update to 3.36.1.
Ricardo Wurmus [Sat, 2 Jun 2018 09:49:31 +0000 (11:49 +0200)]
gnu: r-limma: Update to 3.36.1.

* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.1.

6 years agognu: r-variantannotation: Update to 1.26.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:49:17 +0000 (11:49 +0200)]
gnu: r-variantannotation: Update to 1.26.0.

* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.26.0.

6 years agognu: r-edger: Update to 3.22.2.
Ricardo Wurmus [Sat, 2 Jun 2018 09:49:06 +0000 (11:49 +0200)]
gnu: r-edger: Update to 3.22.2.

* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.2.

6 years agognu: r-genomeinfodb: Update to 1.16.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:48:54 +0000 (11:48 +0200)]
gnu: r-genomeinfodb: Update to 1.16.0.

* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.16.0.

6 years agognu: r-iranges: Update to 2.14.10.
Ricardo Wurmus [Sat, 2 Jun 2018 09:48:42 +0000 (11:48 +0200)]
gnu: r-iranges: Update to 2.14.10.

* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.10.

6 years agognu: r-s4vectors: Update to 0.18.2.
Ricardo Wurmus [Sat, 2 Jun 2018 09:48:29 +0000 (11:48 +0200)]
gnu: r-s4vectors: Update to 0.18.2.

* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.2.

6 years agognu: r-dnacopy: Update to 1.54.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:48:17 +0000 (11:48 +0200)]
gnu: r-dnacopy: Update to 1.54.0.

* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.54.0.

6 years agognu: r-bioccheck: Update to 1.16.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:48:05 +0000 (11:48 +0200)]
gnu: r-bioccheck: Update to 1.16.0.

* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.16.0.

6 years agognu: r-biocstyle: Update to 2.8.2.
Ricardo Wurmus [Sat, 2 Jun 2018 09:47:54 +0000 (11:47 +0200)]
gnu: r-biocstyle: Update to 2.8.2.

* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.8.2.

6 years agognu: r-biocviews: Update to 1.48.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:47:39 +0000 (11:47 +0200)]
gnu: r-biocviews: Update to 1.48.0.

* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.0.

6 years agognu: r-biocinstaller: Update to 1.30.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:47:27 +0000 (11:47 +0200)]
gnu: r-biocinstaller: Update to 1.30.0.

* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.30.0.

6 years agognu: r-biocgenerics: Update to 0.26.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:47:15 +0000 (11:47 +0200)]
gnu: r-biocgenerics: Update to 0.26.0.

* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.26.0.

6 years agognu: r-grohmm: Update to 1.14.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:47:04 +0000 (11:47 +0200)]
gnu: r-grohmm: Update to 1.14.0.

* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.14.0.

6 years agognu: r-systempiper: Update to 1.14.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:46:51 +0000 (11:46 +0200)]
gnu: r-systempiper: Update to 1.14.0.

* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.14.0.

6 years agognu: r-shortread: Update to 1.38.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:46:39 +0000 (11:46 +0200)]
gnu: r-shortread: Update to 1.38.0.

* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.38.0.

6 years agognu: r-gostats: Update to 2.46.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:46:28 +0000 (11:46 +0200)]
gnu: r-gostats: Update to 2.46.0.

* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.46.0.

6 years agognu: r-category: Update to 2.46.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:46:14 +0000 (11:46 +0200)]
gnu: r-category: Update to 2.46.0.

* gnu/packages/bioinformatics.scm (r-category): Update to 2.46.0.

6 years agognu: r-gseabase: Update to 1.42.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:46:02 +0000 (11:46 +0200)]
gnu: r-gseabase: Update to 1.42.0.

* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.42.0.

6 years agognu: r-rbgl: Update to 1.56.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:45:49 +0000 (11:45 +0200)]
gnu: r-rbgl: Update to 1.56.0.

* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.56.0.

6 years agognu: r-annotationforge: Update to 1.22.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:45:36 +0000 (11:45 +0200)]
gnu: r-annotationforge: Update to 1.22.0.

* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.22.0.

6 years agognu: r-dexseq: Update to 1.26.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:45:25 +0000 (11:45 +0200)]
gnu: r-dexseq: Update to 1.26.0.

* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.26.0.

6 years agognu: r-deseq2: Update to 1.20.0.
Ricardo Wurmus [Sat, 2 Jun 2018 09:44:32 +0000 (11:44 +0200)]
gnu: r-deseq2: Update to 1.20.0.

* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.20.0.