jackhill/guix/guix.git
8 years agolint: Export 'run-checkers'.
Alex Kost [Thu, 1 Oct 2015 18:10:16 +0000 (21:10 +0300)]
lint: Export 'run-checkers'.

* guix/scripts/lint.scm (run-checkers): Export.  Make 'checkers'
  argument optional.

8 years agoemacs: Add 'guix-devel-with-definition'.
Alex Kost [Thu, 1 Oct 2015 18:06:42 +0000 (21:06 +0300)]
emacs: Add 'guix-devel-with-definition'.

* emacs/guix-devel.el (guix-devel-with-definition): New macro.
  (guix-devel-build-package-definition): Use it.
  (guix-devel-emacs-font-lock-keywords): New variable.

8 years agoemacs: Fix 'guix-devel-setup-repl'.
Alex Kost [Tue, 6 Oct 2015 17:30:16 +0000 (20:30 +0300)]
emacs: Fix 'guix-devel-setup-repl'.

Setting up guix ports needs to be done in Geiser REPL synchronously,
otherwise this operation may not be finished before the further
evaluating of guile code.

* emacs/guix-guile.el (guix-guile-prompt?): New function.
* emacs/guix-geiser.el (guix-geiser-eval-in-repl-synchronously): New
  function.
* emacs/guix-devel.el (guix-devel-setup-repl): Use it.

8 years agoemacs: Fix 'guix-build-log-phase-toggle-all'.
Alex Kost [Wed, 30 Sep 2015 17:55:00 +0000 (20:55 +0300)]
emacs: Fix 'guix-build-log-phase-toggle-all'.

* emacs/guix-build-log.el (guix-build-log-phase-toggle-all): Handle the
  case when there are no characters before the first phase:
  'guix-build-log-next-phase' moves to the second phase in such a case,
  and the toggling is not done properly, so use 're-search-forward'
  instead.

8 years agoemacs: devel: Fix 'modify-phases' highlighting.
Alex Kost [Fri, 2 Oct 2015 14:25:40 +0000 (17:25 +0300)]
emacs: devel: Fix 'modify-phases' highlighting.

* emacs/guix-devel.el (guix-devel-modify-phases-font-lock-pre): Handle
  the case when 'modify-phases' is commented.

8 years agoemacs: devel: Highlight gexp symbols.
Alex Kost [Sat, 26 Sep 2015 19:42:07 +0000 (22:42 +0300)]
emacs: devel: Highlight gexp symbols.

Suggested by Ludovic Courtès <ludo@gnu.org>.

* emacs/guix-devel.el (guix-devel-gexp-symbol): New face.
  (guix-devel-font-lock-keywords): Adjust to handle gexp symbols.

8 years agognu: libunwind: Add fix for CVE-2015-3239.
Mark H Weaver [Thu, 8 Oct 2015 14:55:04 +0000 (10:55 -0400)]
gnu: libunwind: Add fix for CVE-2015-3239.

* gnu/packages/patches/libunwind-CVE-2015-3239.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/libunwind.scm (libunwind)[source]: Add patch.

8 years agognu: libwmf: Add fixes for several security flaws.
Mark H Weaver [Thu, 8 Oct 2015 14:43:40 +0000 (10:43 -0400)]
gnu: libwmf: Add fixes for several security flaws.

* gnu/packages/patches/libwmf-CAN-2004-0941.patch,
  gnu/packages/patches/libwmf-CVE-2007-0455.patch,
  gnu/packages/patches/libwmf-CVE-2007-2756.patch,
  gnu/packages/patches/libwmf-CVE-2007-3472.patch,
  gnu/packages/patches/libwmf-CVE-2007-3473.patch,
  gnu/packages/patches/libwmf-CVE-2007-3477.patch,
  gnu/packages/patches/libwmf-CVE-2009-3546.patch: New files.
* gnu/packages/patches/libwmf-CVE-2015-0848+4588+4695+4696.patch: Delete
  file.  Replace with ...
* gnu/packages/patches/libwmf-CVE-2015-0848+CVE-2015-4588.patch,
  gnu/packages/patches/libwmf-CVE-2015-4695.patch,
  gnu/packages/patches/libwmf-CVE-2015-4696.patch: ... these new files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/image.scm (libwmf)[source]: Adjust set of patches.

8 years agognu: unzip: Add various fixes.
Mark H Weaver [Thu, 8 Oct 2015 14:01:02 +0000 (10:01 -0400)]
gnu: unzip: Add various fixes.

* gnu/packages/patches/unzip-increase-size-of-cfactorstr.patch: Delete
  file.  Replace with ...
* gnu/packages/patches/unzip-overflow-long-fsize.patch: ... this new file.
* gnu/packages/patches/unzip-attribs-overflow.patch,
  gnu/packages/patches/unzip-fix-overflows-and-infloop.patch,
  gnu/packages/patches/unzip-format-secure.patch: New files.
* gnu/packages/patches/unzip-CVE-2014-9636.patch: Replace contents with
  fixed patch from Fedora.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/zip.scm (unzip)[source]: Adjust list of patches.

8 years agognu: wpa-supplicant: Update to 2.5.
Mark H Weaver [Thu, 8 Oct 2015 12:42:13 +0000 (08:42 -0400)]
gnu: wpa-supplicant: Update to 2.5.

* gnu/packages/patches/wpa-supplicant-2015-2-fix.patch,
  gnu/packages/patches/wpa-supplicant-2015-3-fix.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt1.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt2.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt3.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt4.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt5.patch,
  gnu/packages/patches/wpa-supplicant-2015-5-fix.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-1863.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/admin.scm (wpa-supplicant-minimal): Update to 2.5.
  Remove patches.

8 years agognu: python-h5py: Fix path to hdf5 library.
Ricardo Wurmus [Thu, 8 Oct 2015 11:34:11 +0000 (13:34 +0200)]
gnu: python-h5py: Fix path to hdf5 library.

* gnu/packages/python.scm (python-h5py)[arguments]: Add "fix-hdf5-paths"
  phase.

8 years agognu: python-h5py, python2-h5py: Correct inputs.
Ricardo Wurmus [Thu, 8 Oct 2015 11:30:23 +0000 (13:30 +0200)]
gnu: python-h5py, python2-h5py: Correct inputs.

* gnu/packages/python.scm (python-h5py)
  [inputs]: Remove python-cython and python-numpy.
  [propagated-inputs]: New field.
  [native-inputs]: Drop python-setuptools and add python-cython.
  (python2-h5py): Replace "inputs" with "propagated-inputs".

8 years agognu: Add python-joblib.
Ricardo Wurmus [Wed, 7 Oct 2015 11:01:36 +0000 (13:01 +0200)]
gnu: Add python-joblib.

* gnu/packages/python.scm (python-joblib, python2-joblib): New
  variables.

8 years agoCorrect "Revert "gnu: camlp4: Remove extra input.""
Efraim Flashner [Thu, 8 Oct 2015 09:17:21 +0000 (12:17 +0300)]
Correct "Revert "gnu: camlp4: Remove extra input.""

This corrects a typo in 0d1c0660d7b446188b36f19d0dd79d8f97bd4360.

8 years agoRevert "gnu: camlp4: Remove extra input."
Efraim Flashner [Thu, 8 Oct 2015 09:10:47 +0000 (12:10 +0300)]
Revert "gnu: camlp4: Remove extra input."

This reverts commit d04efa0fff908de0f8822a27582b4b1c3dcae553.

8 years agognu: webkitgtk-2.4: Fix potential code execution vulnerability.
Mark H Weaver [Thu, 8 Oct 2015 02:50:46 +0000 (22:50 -0400)]
gnu: webkitgtk-2.4: Fix potential code execution vulnerability.

* gnu/packages/patches/webkitgtk-2.4-sql-init-string.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/webkit.scm (webkitgtk-2.4)[source]: Add patch.

8 years agognu: libvpx: Set size limit to avoid CVE-2015-1258.
Mark H Weaver [Thu, 8 Oct 2015 02:37:17 +0000 (22:37 -0400)]
gnu: libvpx: Set size limit to avoid CVE-2015-1258.

* gnu/packages/video.scm (libvpx)[arguments]: Add "--size-limit"
  argument to configure.

8 years agognu: openjpeg-2.x: Add fix for CVE-2015-6581.
Mark H Weaver [Thu, 8 Oct 2015 02:17:12 +0000 (22:17 -0400)]
gnu: openjpeg-2.x: Add fix for CVE-2015-6581.

* gnu/packages/patches/openjpeg-CVE-2015-6581.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/image.scm (openjpeg, openjpeg-2.0)[source]: Add patch.

8 years agognu: camlp4: Remove extra input.
Efraim Flashner [Wed, 7 Oct 2015 11:44:59 +0000 (14:44 +0300)]
gnu: camlp4: Remove extra input.

* gnu/packages/ocaml.scm (camlp4)[inputs]: Removed duplicate "ocaml"
  entry from native-inputs.

8 years agognu: gprolog: Remove armhf from supported architectures.
Efraim Flashner [Wed, 7 Oct 2015 09:16:45 +0000 (12:16 +0300)]
gnu: gprolog: Remove armhf from supported architectures.

* gnu/packages/gprolog.scm (gprolog)[supported-systems]: Remove
  armhf-linux from the list of supported systems.

8 years agognu: mosh: Update to 1.2.5.
Efraim Flashner [Wed, 7 Oct 2015 13:43:40 +0000 (16:43 +0300)]
gnu: mosh: Update to 1.2.5.

* gnu/packages/ssh.scm (mosh): Update to 1.2.5.

8 years agognu: enlightenment: Update to 0.19.12.
Efraim Flashner [Wed, 7 Oct 2015 07:44:46 +0000 (10:44 +0300)]
gnu: enlightenment: Update to 0.19.12.

* gnu/packages/enlightenment.scm (enlightenment): Update to 0.19.12.

8 years agognu: Add r-htmlwidgets.
Ricardo Wurmus [Mon, 28 Sep 2015 13:23:10 +0000 (15:23 +0200)]
gnu: Add r-htmlwidgets.

* gnu/packages/web.scm (r-htmlwidgets): New variable.

8 years agognu: Add r-htmltools.
Ricardo Wurmus [Mon, 28 Sep 2015 13:22:49 +0000 (15:22 +0200)]
gnu: Add r-htmltools.

* gnu/packages/web.scm (r-htmltools): New variable.

8 years agognu: ibus-libpinyin: Add GTK+ and Glib inputs.
Ricardo Wurmus [Wed, 7 Oct 2015 06:52:41 +0000 (08:52 +0200)]
gnu: ibus-libpinyin: Add GTK+ and Glib inputs.

* gnu/packages/ibus.scm (ibus-libpinyin)[inputs]: Add gtk+.
  [native-inputs]: Add glib:bin.

8 years agognu: imagemagick: Hard-code delegate paths.
Eric Bavier [Tue, 6 Oct 2015 03:16:40 +0000 (22:16 -0500)]
gnu: imagemagick: Hard-code delegate paths.

If --with-frozenpaths is given, then configure will retain absolute paths
discovered for delegate programs, otherwise they are discarded.

* gnu/packages/imagemagick.scm (imagemagick)[arguments]: Add
  '--with-frozenpaths' to #:configure-flags.

8 years agopublish: Fix file descriptor leak.
Ludovic Courtès [Tue, 6 Oct 2015 21:45:38 +0000 (23:45 +0200)]
publish: Fix file descriptor leak.

A client closing the connection while reading from a /nar URL would
leave an open file descriptor in the server.  This patch fixes it.

* guix/scripts/publish.scm (swallow-EPIPE): New macro.
  (http-write): Use it around 'write-file' call.

8 years agodoc: Clarify how to run 'guix refresh -u'.
Ludovic Courtès [Tue, 6 Oct 2015 21:35:50 +0000 (23:35 +0200)]
doc: Clarify how to run 'guix refresh -u'.

* doc/guix.texi (Invoking guix refresh): Mention ./pre-inst-env.

8 years agoimport: snix: Adjust names of license attributes.
Ludovic Courtès [Tue, 6 Oct 2015 21:29:41 +0000 (23:29 +0200)]
import: snix: Adjust names of license attributes.

* guix/import/snix.scm (license-variable): Adjust names to current
  Nixpkgs.

8 years agoutils: Remove Nixpkgs helpers.
Ludovic Courtès [Tue, 6 Oct 2015 20:33:03 +0000 (22:33 +0200)]
utils: Remove Nixpkgs helpers.

* guix/config.scm.in (%nixpkgs): Remove.
* guix/utils.scm (%nixpkgs-directory, nixpkgs-derivation,
  nixpkgs-derivation*): Remove.
* test-env.in: Export 'NIXPKGS'.
* tests/derivations.scm (%coreutils): Remove use of
  'nixpkgs-derivation'.
* tests/snix.scm (%nixpkgs-directory): New variable.
  Adjust users accordingly.

8 years agobuild: Automatically determine libgcrypt's file name.
Ludovic Courtès [Tue, 6 Oct 2015 20:09:40 +0000 (22:09 +0200)]
build: Automatically determine libgcrypt's file name.

* m4/guix.m4 (GUIX_LIBGCRYPT_LIBDIR): New macro.
* configure.ac: Use it when no --with-libgcrypt-* option was passed.
* README: Do not recommend --with-libgcrypt-prefix.

Co-authored-by: 宋文武 <iyzsong@gmail.com>
8 years agognu: elementary: Update to 1.15.2.
Efraim Flashner [Tue, 6 Oct 2015 20:33:03 +0000 (23:33 +0300)]
gnu: elementary: Update to 1.15.2.

* gnu/packages/enlightenment.scm (elementary): Update to 1.15.2.

8 years agognu: efl: Update to 1.15.2.
Efraim Flashner [Tue, 6 Oct 2015 20:13:23 +0000 (23:13 +0300)]
gnu: efl: Update to 1.15.2.

* gnu/packages/enlightenment.scm (efl): Update to 1.15.2.

8 years agognu: libbluray: Remove java as native-input.
Efraim Flashner [Tue, 6 Oct 2015 17:22:09 +0000 (20:22 +0300)]
gnu: libbluray: Remove java as native-input.

* gnu/packages/video.scm (libbluray)[inputs]: Remove "ant" and "icedtea"
  as native-inputs.
  [arguments]: Remove environmental variable "JAVA_HOME". Add configure
  flag to disable java.

8 years agognu: libdvdcss: Update to 1.3.99.
Efraim Flashner [Tue, 6 Oct 2015 12:16:52 +0000 (15:16 +0300)]
gnu: libdvdcss: Update to 1.3.99.

* gnu/packages/video.scm (libdvdcss): Update to 1.3.99.

8 years agognu: libbluray: Upgrade to 0.9.1.
Efraim Flashner [Tue, 6 Oct 2015 12:04:12 +0000 (15:04 +0300)]
gnu: libbluray: Upgrade to 0.9.1.

* gnu/packages/video.scm (libbluray): Upgrade to 0.9.1.
  [inputs]: Add "ant" and "icedtea7" to native-inputs.
  [arguments]: Set environment variable "JAVA_HOME".

8 years agoimport: pypi: Remove unused procedure.
Ludovic Courtès [Sun, 4 Oct 2015 17:23:21 +0000 (19:23 +0200)]
import: pypi: Remove unused procedure.

* guix/import/pypi.scm (join): Remove.

8 years agognu: wine: Update to 1.7.52, add more inputs.
宋文武 [Mon, 5 Oct 2015 10:19:21 +0000 (18:19 +0800)]
gnu: wine: Update to 1.7.52, add more inputs.

* gnu/packages/wine.scm (wine): Update to 1.7.52.
  [inputs]: Add cups, glu and openal.

8 years agognu: feh: Update to 2.14.
宋文武 [Mon, 5 Oct 2015 08:28:30 +0000 (16:28 +0800)]
gnu: feh: Update to 2.14.

* gnu/packages/feh.scm (feh): Update to 2.14.

8 years agognu: calibre: Update to 2.40.0.
Andreas Enge [Sun, 4 Oct 2015 16:10:05 +0000 (18:10 +0200)]
gnu: calibre: Update to 2.40.0.

* gnu/packages/ebook.scm (calibre): Update to 2.40.0.

8 years agognu: qt: Remove bundled copy of sqlite.
Andreas Enge [Sun, 4 Oct 2015 18:00:28 +0000 (20:00 +0200)]
gnu: qt: Remove bundled copy of sqlite.

* gnu/packages/qt.scm (qt)[source]: Add snippet to remove the bundled
  copy of sqlite.

Partially fixes <http://bugs.gnu.org/21288>.

8 years agognu: qt: Compile with system harfbuzz.
Andreas Enge [Sun, 4 Oct 2015 17:08:13 +0000 (19:08 +0200)]
gnu: qt: Compile with system harfbuzz.

* gnu/packages/qt.scm (qt)[source]: Add a snippet to remove one of the two
  bundled copies of harfbuzz.
  [arguments]: Pass a configure flag to use harfbuzz from the system.

Partially fixes <http://bugs.gnu.org/21288>.

8 years agognu: qt: Remove the sources of qtwebengine.
Andreas Enge [Sun, 4 Oct 2015 10:56:45 +0000 (12:56 +0200)]
gnu: qt: Remove the sources of qtwebengine.

* gnu/packages/qt.scm (qt)[source]: Add snippet to remove the qtwebengine
  code, which was already not built anymore, and drop one patch used
  previously only for qtwebengine.
  [arguments]: Drop the configuration flag "-skip qtwebengine", since
  deleted modules cannot be skipped.
* gnu/packages/patches/qt5-runpath.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Unregister patch.

Partially fixes <http://bugs.gnu.org/21288>.

8 years agognu: Add autobuild.
Mathieu Lirzin [Thu, 1 Oct 2015 20:55:34 +0000 (22:55 +0200)]
gnu: Add autobuild.

* gnu/packages/autotools.scm (autobuild): New variable.

8 years agognu: linux-libre: Update to 4.2.3.
Mark H Weaver [Sun, 4 Oct 2015 16:34:22 +0000 (12:34 -0400)]
gnu: linux-libre: Update to 4.2.3.

* gnu/packages/linux.scm (linux-libre): Update to 4.2.3.

8 years agognu: rtorrent: Update to 0.9.6.
Alex Kost [Sat, 3 Oct 2015 19:23:40 +0000 (22:23 +0300)]
gnu: rtorrent: Update to 0.9.6.

* gnu/packages/bittorrent.scm (rtorrent): Update to 0.9.6.
  [source]: Use new URL.

8 years agognu: libtorrent: Update to 0.13.6.
Alex Kost [Sat, 3 Oct 2015 19:21:33 +0000 (22:21 +0300)]
gnu: libtorrent: Update to 0.13.6.

* gnu/packages/bittorrent.scm (libtorrent): Update to 0.13.6.
  [source]: Use new URL.
  [native-inputs]: Uncomment "cppunit" (for tests).
  [argument]: Remove (to enable tests).

8 years agognu: libtorrent, rtorrent: Update home pages.
Alex Kost [Sat, 3 Oct 2015 19:16:27 +0000 (22:16 +0300)]
gnu: libtorrent, rtorrent: Update home pages.

* gnu/packages/bittorrent.scm (libtorrent): Update 'home-page'.
  (rtorrent): Likewise.

8 years agognu: lirc: Update to 0.9.3.
Alex Kost [Fri, 2 Oct 2015 13:53:24 +0000 (16:53 +0300)]
gnu: lirc: Update to 0.9.3.

* gnu/packages/lirc.scm (lirc): Update to 0.9.3.
  [native-inputs]: Add "libxslt".

8 years agognu: qt-4: Disable webkit build.
Andreas Enge [Sat, 3 Oct 2015 22:51:21 +0000 (00:51 +0200)]
gnu: qt-4: Disable webkit build.

* gnu/packages/qt.scm (qt-4)[source]: Add snippet to remove the webkit code
  and drop one patch used previously for webkit.
  [arguments]: Add configure flag to disable building the webkit module.
* gnu/packages/patches/qt4-tests.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Unregister patch.

Partially fixes <http://bugs.gnu.org/21288>.

8 years agognu: libqtxdg: Fix download location.
Andreas Enge [Sat, 3 Oct 2015 20:49:12 +0000 (22:49 +0200)]
gnu: libqtxdg: Fix download location.

* gnu/packages/lxqt.scm (libqtxdg)[source]: Fix download location.

8 years agognu: liblxqt: Fix download location.
Andreas Enge [Sat, 3 Oct 2015 20:41:59 +0000 (22:41 +0200)]
gnu: liblxqt: Fix download location.

* gnu/packages/lxqt.scm (liblxqt)[source]: Fix download location.
  [description]: Fix typo.

8 years agognu: Add lxqt-session.
Andreas Enge [Sat, 3 Oct 2015 19:20:41 +0000 (21:20 +0200)]
gnu: Add lxqt-session.

* gnu/packages/lxqt.scm (lxqt-session): New variable.

8 years agognu: Add lxqt-common.
Andreas Enge [Sat, 3 Oct 2015 17:45:06 +0000 (19:45 +0200)]
gnu: Add lxqt-common.

* gnu/packages/lxqt.scm (lxqt-common): New variable.

8 years agognu: liblxqt: Fix download location.
Andreas Enge [Sat, 3 Oct 2015 15:59:07 +0000 (17:59 +0200)]
gnu: liblxqt: Fix download location.

* gnu/packages/lxqt.scm (liblxqt)[source]: Use the .tar.xz release
  exclusively; drop the alternative URI for .tar.gz and correct the hash.

8 years agognu: Add file-roller.
David Thompson [Sat, 19 Sep 2015 23:20:52 +0000 (19:20 -0400)]
gnu: Add file-roller.

* gnu/packages/gnome.scm (file-roller): New variable.

8 years agognu: vsearch: Restrict supported systems to x86_64-linux.
Ben Woodcroft [Sat, 3 Oct 2015 01:46:22 +0000 (11:46 +1000)]
gnu: vsearch: Restrict supported systems to x86_64-linux.

* gnu/packages/bioinformatics.scm (vsearch)[supported-systems]: Restrict
  to x86_64-linux.

Signed-off-by: Andreas Enge <andreas@enge.fr>
8 years agognu: libmicrohttpd: Update to 0.9.44.
Andreas Enge [Fri, 2 Oct 2015 21:30:20 +0000 (23:30 +0200)]
gnu: libmicrohttpd: Update to 0.9.44.

* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.44.

8 years agognu: eigen: Update to 3.2.6.
Andreas Enge [Fri, 2 Oct 2015 21:13:20 +0000 (23:13 +0200)]
gnu: eigen: Update to 3.2.6.

* gnu/packages/algebra.scm (eigen): Update to 3.2.6.

8 years agognu: valgrind: Enable the arm architecture during configuration.
Andreas Enge [Fri, 2 Oct 2015 18:59:20 +0000 (20:59 +0200)]
gnu: valgrind: Enable the arm architecture during configuration.

* gnu/packages/patches/valgrind-enable-arm.patch: New file.
* gnu/packages/valgrind.scm (valgrind)[source]: Add patch.
* gnu-system.am (dist_patch_DATA): Enable patch.

8 years agognu: valgrind: Update to 3.11.0.
Andreas Enge [Fri, 2 Oct 2015 18:26:45 +0000 (20:26 +0200)]
gnu: valgrind: Update to 3.11.0.

* gnu/packages/valgrind.scm (valgrind): Update to 3.11.0.
  [source]: Remove the patches
* gnu/packages/patches/valgrind-glibc-2.22.patch,
  gnu/packages/patches/valgrind-linux-libre-4.x.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Unregister the patches.

8 years agognu: glpk: Update to 4.56.
Andreas Enge [Fri, 2 Oct 2015 18:07:17 +0000 (20:07 +0200)]
gnu: glpk: Update to 4.56.

* gnu/packages/maths.scm (glpk): Update to 4.56.

8 years agognu: freeimage: Add fix for CVE-2015-0852.
Mark H Weaver [Fri, 2 Oct 2015 16:52:00 +0000 (12:52 -0400)]
gnu: freeimage: Add fix for CVE-2015-0852.

* gnu/packages/patches/freeimage-CVE-2015-0852.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/image.scm (freeimage)[source]: Add patch.

8 years agognu: freeimage: Update to 3.17.0.
Mark H Weaver [Fri, 2 Oct 2015 16:49:15 +0000 (12:49 -0400)]
gnu: freeimage: Update to 3.17.0.

* gnu/packages/image.scm (freeimage): Update to 3.17.0.
  [source]: Use 'string-concatenate' in URI computation.

8 years agognu: openjpeg-2.x: Add fix for use-after-free in opj_j2k_write_mco.
Mark H Weaver [Fri, 2 Oct 2015 16:30:41 +0000 (12:30 -0400)]
gnu: openjpeg-2.x: Add fix for use-after-free in opj_j2k_write_mco.

* gnu/packages/patches/openjpeg-use-after-free-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/image.scm (openjpeg, openjpeg-2.0)[source]: Add patch.
  [home-page]: Update.

8 years agognu: clipper: Add 'file-name' field to source origin.
Mark H Weaver [Fri, 2 Oct 2015 14:54:20 +0000 (10:54 -0400)]
gnu: clipper: Add 'file-name' field to source origin.

* gnu/packages/bioinformatics.scm (clipper)[source]: Add file-name.

8 years agognu: orc: Update to 0.4.24.
Andreas Enge [Thu, 1 Oct 2015 20:37:38 +0000 (22:37 +0200)]
gnu: orc: Update to 0.4.24.

* gnu/packages/gstreamer.scm (orc): Update to 0.4.24.

8 years agognu: Add python-xlrd.
Ben Woodcroft [Sat, 19 Sep 2015 13:35:18 +0000 (23:35 +1000)]
gnu: Add python-xlrd.

* gnu/packages/python.scm (python-xlrd, python2-xlrd): New variables.

Signed-off-by: Mathieu Lirzin <mthl@openmailbox.org>
8 years agognu: powertop: Fix url.
Efraim Flashner [Thu, 1 Oct 2015 19:53:12 +0000 (22:53 +0300)]
gnu: powertop: Fix url.

* gnu/packages/linux.scm (powertop): Fixed incorrect url.

8 years agognu: openblas: Fix configure flags on armhf and take target system into account for...
Andreas Enge [Thu, 1 Oct 2015 08:32:29 +0000 (10:32 +0200)]
gnu: openblas: Fix configure flags on armhf and take target system into account for cross building.

* gnu/packages/maths.scm (openblas)[arguments]: Make package substitutable
  and enable runtime cpu detection only on x86 systems. Take the target
  system into account when cross compiling.

8 years agognu: powertop: Update to 2.7.
Efraim Flashner [Wed, 30 Sep 2015 17:39:40 +0000 (20:39 +0300)]
gnu: powertop: Update to 2.7.

* gnu/packages/linux.scm (powertop): Update to 2.7.
  [arguments]: Add "pciutils" to inputs.

8 years agognu: graphviz: Add "doc" output.
Efraim Flashner [Wed, 30 Sep 2015 17:20:16 +0000 (20:20 +0300)]
gnu: graphviz: Add "doc" output.

* gnu/packages/graphviz.scm (graphviz)[outputs, arguments]: New fields.

8 years agognu: graphviz: Update to 2.38.0.
Efraim Flashner [Tue, 29 Sep 2015 19:33:45 +0000 (22:33 +0300)]
gnu: graphviz: Update to 2.38.0.

* gnu/packages/graphviz.scm (graphviz): Update to 2.38.0.

8 years agognu: mpg123: Update to 1.22.4.
Efraim Flashner [Tue, 29 Sep 2015 18:51:46 +0000 (21:51 +0300)]
gnu: mpg123: Update to 1.22.4.

* gnu/packages/mp3.scm (mpg123): Update to 1.22.4.

8 years agognu: mpv: Update to 0.11.0.
Efraim Flashner [Tue, 29 Sep 2015 18:43:53 +0000 (21:43 +0300)]
gnu: mpv: Update to 0.11.0.

* gnu/packages/video.scm (mpv): Update to 0.11.0.

8 years agognu: youtube-dl: Update to 2015.09.28.
Efraim Flashner [Tue, 29 Sep 2015 18:29:04 +0000 (21:29 +0300)]
gnu: youtube-dl: Update to 2015.09.28.

* gnu/packages/video.scm (youtube-dl): Update to 2015.09.28.

8 years agognu: terminology: Update to 0.9.1.
Efraim Flashner [Tue, 29 Sep 2015 18:25:42 +0000 (21:25 +0300)]
gnu: terminology: Update to 0.9.1.

* gnu/packages/enlightenment.scm (terminology): Update to 0.9.1.

8 years agognu: enlightenment: Update to 0.19.11.
Efraim Flashner [Tue, 29 Sep 2015 18:17:25 +0000 (21:17 +0300)]
gnu: enlightenment: Update to 0.19.11.

* gnu/packages/enlightenment.scm (enlightenment): Update to 0.19.11.

8 years agognu: Add GNU Unifont.
宋文武 [Thu, 1 Oct 2015 13:20:03 +0000 (21:20 +0800)]
gnu: Add GNU Unifont.

* gnu/packages/fonts.scm (font-gnu-unifont): New variable.

8 years agognu: shroud: Update to 0.1.1.
David Thompson [Thu, 1 Oct 2015 12:57:14 +0000 (08:57 -0400)]
gnu: shroud: Update to 0.1.1.

* gnu/packages/password-utils.scm (shroud): Update to 0.1.1.

8 years agognu: Add shroud.
David Thompson [Tue, 29 Sep 2015 16:23:52 +0000 (12:23 -0400)]
gnu: Add shroud.

* gnu/packages/password-utils.scm (shroud): New variable.

8 years agognu: xterm: Update to 320.
宋文武 [Thu, 1 Oct 2015 07:15:20 +0000 (15:15 +0800)]
gnu: xterm: Update to 320.

* gnu/packages/xorg.scm (xterm): Update to 320.

8 years agodownload: Check whether HORIZONTAL ELLIPSIS can be encoded.
Ludovic Courtès [Thu, 1 Oct 2015 09:28:58 +0000 (11:28 +0200)]
download: Check whether HORIZONTAL ELLIPSIS can be encoded.

* guix/build/download.scm (ellipsis): New procedure.
  (store-path-abbreviation): Use it.

8 years agognu: emacs: Claim 'INFOPATH'.
Ludovic Courtès [Thu, 1 Oct 2015 09:28:19 +0000 (11:28 +0200)]
gnu: emacs: Claim 'INFOPATH'.

Reported by Konrad Hinsen <konrad.hinsen@fastmail.net>.

* gnu/packages/emacs.scm (emacs)[native-search-path]: New field.

8 years agognu: Add vsearch.
Ben Woodcroft [Wed, 30 Sep 2015 08:35:32 +0000 (18:35 +1000)]
gnu: Add vsearch.

* gnu/packages/bioinformatics.scm (vsearch): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
8 years agognu: Add cityhash.
Ben Woodcroft [Tue, 29 Sep 2015 12:10:33 +0000 (22:10 +1000)]
gnu: Add cityhash.

* gnu/packages/textutils.scm (cityhash): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
8 years agognu: linux-libre: Update to 4.2.2.
Mark H Weaver [Wed, 30 Sep 2015 16:47:35 +0000 (12:47 -0400)]
gnu: linux-libre: Update to 4.2.2.

* gnu/packages/linux.scm (linux-libre): Update to 4.2.2.

8 years agognu: Add gzochi.
Julian Graham [Tue, 29 Sep 2015 03:08:30 +0000 (23:08 -0400)]
gnu: Add gzochi.

* gnu/packages/game-development.scm (gzochi): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
8 years agognu: Add pigz.
Jeff Mickey [Mon, 28 Sep 2015 21:55:56 +0000 (14:55 -0700)]
gnu: Add pigz.

* gnu/packages/compression.scm (pigz): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
8 years agognu: lsh: 'lsh-authorize' uses the absolute file name of 'sexp-conv'.
Ludovic Courtès [Mon, 28 Sep 2015 19:58:26 +0000 (21:58 +0200)]
gnu: lsh: 'lsh-authorize' uses the absolute file name of 'sexp-conv'.

Fixes <http://bugs.gnu.org/21516>.
Reported by Andreas Enge <andreas@enge.fr>.

* gnu/packages/lsh.scm (lsh)[arguments]: In 'pre-configure' phase,
  change 'src/lsh-authorize' to use the absolute file name of
  'sexp-conv'.

8 years agoguix gc: Add '--list-failures' and '--clear-failures'.
Ludovic Courtès [Mon, 28 Sep 2015 19:45:46 +0000 (21:45 +0200)]
guix gc: Add '--list-failures' and '--clear-failures'.

Suggested by Mark H Weaver <mhw@netris.org>.

* guix/scripts/gc.scm (show-help, %options): Add --list-failures and
  --clear-failures.
  (guix-gc): Honor them.
* doc/guix.texi (Invoking guix gc): Document them.
  (Invoking guix-daemon): Mention them.

8 years agostore: Add 'query-failed-paths' and 'clear-failed-paths' RPCs.
Ludovic Courtès [Mon, 28 Sep 2015 19:32:17 +0000 (21:32 +0200)]
store: Add 'query-failed-paths' and 'clear-failed-paths' RPCs.

Suggested by Mark H Weaver <mhw@netris.org>.

* guix/store.scm (query-failed-paths, clear-failed-paths): New
  procedures.
* tests/guix-daemon.sh: Add test with daemon started with
  --cache-failures.

8 years agotests: 'open-connection-for-tests' takes an optional parameter.
Ludovic Courtès [Mon, 28 Sep 2015 19:31:30 +0000 (21:31 +0200)]
tests: 'open-connection-for-tests' takes an optional parameter.

* guix/tests.scm (open-connection-for-tests): Add optional FILE
  parameter; pass it to 'open-connection'.

8 years agognu: Add bio-blastxmlparser.
Pjotr Prins [Mon, 28 Sep 2015 10:19:21 +0000 (12:19 +0200)]
gnu: Add bio-blastxmlparser.

* gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable.

8 years agognu: Add r-data.table.
Vicente Vera Parra [Sun, 27 Sep 2015 02:56:04 +0000 (23:56 -0300)]
gnu: Add r-data.table.

* gnu/packages/statistics.scm (r-data.table): New variable.

8 years agognu: Add r-chron.
Vicente Vera Parra [Sun, 27 Sep 2015 02:54:08 +0000 (23:54 -0300)]
gnu: Add r-chron.

* gnu/packages/statistics.scm (r-chron): New variable.

8 years agognu: Add r-servr.
Ricardo Wurmus [Mon, 21 Sep 2015 09:21:11 +0000 (11:21 +0200)]
gnu: Add r-servr.

* gnu/packages/web.scm (r-servr): New variable.

8 years agognu: Add r-jsonlite.
Ricardo Wurmus [Mon, 21 Sep 2015 09:20:55 +0000 (11:20 +0200)]
gnu: Add r-jsonlite.

* gnu/packages/web.scm (r-jsonlite): New variable.

8 years agognu: Add r-httpuv.
Ricardo Wurmus [Mon, 21 Sep 2015 09:20:32 +0000 (11:20 +0200)]
gnu: Add r-httpuv.

* gnu/packages/web.scm (r-httpuv): New variable.

8 years agodoc: Fix spelling.
Mark H Weaver [Mon, 28 Sep 2015 06:09:59 +0000 (02:09 -0400)]
doc: Fix spelling.

This is a followup to commit ba7d6c763c6adac4cf26fef656c7f98296601d0b.

* doc/guix.texi (Synopses and Descriptions): Fix spelling.