jackhill/guix/guix.git
5 years agobuild: Fine-tune the forbidden M4 patterns.
Ludovic Courtès [Fri, 12 Oct 2018 13:09:56 +0000 (15:09 +0200)]
build: Fine-tune the forbidden M4 patterns.

* configure.ac: Forbid "^GUILE_P", allow "^GUILE_PKG_ERRORS".

5 years agobuild: Remove obsolete reference to 'GUIX_ASSERT_LIBGCRYPT_USABLE'.
Ludovic Courtès [Fri, 12 Oct 2018 13:04:44 +0000 (15:04 +0200)]
build: Remove obsolete reference to 'GUIX_ASSERT_LIBGCRYPT_USABLE'.

Reported by Mark H Weaver <mhw@netris.org>.
Fixes <https://bugs.gnu.org/33023>.

* configure.ac: Remove use of 'GUIX_ASSERT_LIBGCRYPT_USABLE'.
Add "^GUIX_" to the forbidden M4 patterns.

5 years agognu: Remove duplicate ruby-yard package definition.
Christopher Baines [Sun, 7 Oct 2018 09:38:26 +0000 (10:38 +0100)]
gnu: Remove duplicate ruby-yard package definition.

* gnu/packages/ruby.scm (ruby-yard): Remove one of the two package
definitions, and update the other to the latest release.

5 years agognu: Remove duplicate ruby-concurrent package definition.
Christopher Baines [Sun, 7 Oct 2018 09:37:40 +0000 (10:37 +0100)]
gnu: Remove duplicate ruby-concurrent package definition.

* gnu/packages/ruby.scm (ruby-concurrent): Remove one of the two definitions
for this variable.

5 years agoprofiles: 'user-friendly-profile' now recognizes ~/.config/guix/current.
Ludovic Courtès [Thu, 11 Oct 2018 22:12:00 +0000 (00:12 +0200)]
profiles: 'user-friendly-profile' now recognizes ~/.config/guix/current.

* guix/profiles.scm (%known-shorthand-profiles): New variable.
(user-friendly-profile): Use it.

5 years agopull: Create /var/guix/profiles/per-user/USER/current-guix.
Ludovic Courtès [Thu, 11 Oct 2018 21:53:18 +0000 (23:53 +0200)]
pull: Create /var/guix/profiles/per-user/USER/current-guix.

Previously the migration code would fail to create that file, so
~/.config/guix/current would be dangling.

* guix/scripts/pull.scm (migrate-generations): Create
/var/guix/profiles/per-user/USER/current-guix.

5 years agognu: u-boot: Update to 2018.09.
Vagrant Cascadian [Mon, 8 Oct 2018 03:16:47 +0000 (20:16 -0700)]
gnu: u-boot: Update to 2018.09.

* gnu/packages/bootloaders.scm (u-boot): Update to 2018.09.
(u-boot-tools)[arguments]: Substitute "coverage" for "python-coverage". Update
workaround for only 99% test coverage.

Signed-off-by: Leo Famulari <leo@famulari.name>
5 years agognu: godot: Update to 3.0.6.
Brett Gilio [Thu, 11 Oct 2018 20:31:08 +0000 (16:31 -0400)]
gnu: godot: Update to 3.0.6.

* gnu/packages/game-development.scm (godot): Update to 3.0.6.

5 years agognu: Krita: Update to 4.1.5.
Leo Famulari [Thu, 11 Oct 2018 17:03:58 +0000 (13:03 -0400)]
gnu: Krita: Update to 4.1.5.

* gnu/packages/kde.scm (krita): Update to 4.1.5.

5 years agognu: guix-daemon: Run 'guix' from /var/guix/profiles/per-user/root.
Ludovic Courtès [Thu, 11 Oct 2018 16:27:21 +0000 (18:27 +0200)]
gnu: guix-daemon: Run 'guix' from /var/guix/profiles/per-user/root.

Fixes <https://bugs.gnu.org/32183>.
Reported by Pjotr Prins <pjotr.public12@thebird.nl>
and Konrad Hinsen <konrad.hinsen@fastmail.net>.

* gnu/packages/package-management.scm (guix-daemon)[arguments]: Execute
/var/guix/profiles/per-user/root/current-guix/bin/guix instead of ~root/….

5 years agopull: Turn ~/.config/guix/current into a symlink to /var/guix/profiles.
Ludovic Courtès [Tue, 9 Oct 2018 09:51:44 +0000 (11:51 +0200)]
pull: Turn ~/.config/guix/current into a symlink to /var/guix/profiles.

This is more consistent with what 'guix package' does, more pleasant for
users (we no longer clobber ~/.config/guix), and more
cluster-friendly (since /var/guix/profiles is usually an NFS share
already.)

* guix/scripts/pull.scm (%current-profile, %user-profile-directory): New
variables.
(migrate-generations, ensure-default-profile): New procedures.
(guix-pull): Use %CURRENT-PROFILE by default.  Call
'ensure-default-profile'.
* doc/guix.texi (Invoking guix pull): Adjust 'guix package -p
~/.config/guix/current' example.
* guix/scripts.scm (warn-about-old-distro): Check %PROFILE-DIRECTORY
"/current-guix".

5 years agoprofiles: Generalize 'canonicalize-profile'.
Ludovic Courtès [Tue, 9 Oct 2018 09:51:12 +0000 (11:51 +0200)]
profiles: Generalize 'canonicalize-profile'.

* guix/profiles.scm (canonicalize-profile): Rewrite to work with any
profile that lives under %PROFILE-DIRECTORY.

5 years agoprofiles: Add 'ensure-profile-directory'.
Ludovic Courtès [Thu, 11 Oct 2018 16:04:51 +0000 (18:04 +0200)]
profiles: Add 'ensure-profile-directory'.

* guix/scripts/package.scm (ensure-default-profile): Move
/var/guix/profiles/per-user handling to...
* guix/profiles.scm (ensure-profile-directory): ... here.  New
procedure.
* po/guix/POTFILES.in: Add 'guix/profiles.scm'.

5 years agognu: kallisto: Update to 0.44.0.
Ricardo Wurmus [Thu, 11 Oct 2018 14:12:11 +0000 (16:12 +0200)]
gnu: kallisto: Update to 0.44.0.

* gnu/packages/bioinformatics.scm (kallisto): Update to 0.44.0.
[source]: Fetch from git.
[arguments]: Add build phase to use htslib from Guix.
[inputs]: Add htslib.

5 years agognu: Add python-cvxopt.
Ricardo Wurmus [Thu, 11 Oct 2018 08:30:00 +0000 (10:30 +0200)]
gnu: Add python-cvxopt.

* gnu/packages/maths.scm (python-cvxopt, python2-cvxopt): New variables.

5 years agognu: linux-libre: Update to 4.18.13.
Mark H Weaver [Thu, 11 Oct 2018 03:19:36 +0000 (23:19 -0400)]
gnu: linux-libre: Update to 4.18.13.

* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.13.
(%linux-libre-hash): Update hash.

5 years agognu: linux-libre@4.14: Update to 4.14.75.
Mark H Weaver [Thu, 11 Oct 2018 03:18:28 +0000 (23:18 -0400)]
gnu: linux-libre@4.14: Update to 4.14.75.

* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.75.
(%linux-libre-4.14-hash): Update hash.

5 years agognu: linux-libre@4.9: Update to 4.9.132.
Mark H Weaver [Thu, 11 Oct 2018 03:17:53 +0000 (23:17 -0400)]
gnu: linux-libre@4.9: Update to 4.9.132.

* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.132.

5 years agognu: linux-libre@4.4: Update to 4.4.160.
Mark H Weaver [Thu, 11 Oct 2018 03:17:14 +0000 (23:17 -0400)]
gnu: linux-libre@4.4: Update to 4.4.160.

* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.160.

5 years agognu: hexchat: Update to 2.14.2.
Tobias Geerinckx-Rice [Wed, 10 Oct 2018 21:57:29 +0000 (23:57 +0200)]
gnu: hexchat: Update to 2.14.2.

* gnu/packages/messaging.scm (hexchat): Update to 2.14.2.

5 years agognu: tlp: Return #t from phases.
Tobias Geerinckx-Rice [Wed, 10 Oct 2018 21:54:17 +0000 (23:54 +0200)]
gnu: tlp: Return #t from phases.

* gnu/packages/linux.scm (tlp)[argument]: Return #t all from phases.

5 years agognu: hdparm: Update to 9.56.
Tobias Geerinckx-Rice [Wed, 10 Oct 2018 21:45:55 +0000 (23:45 +0200)]
gnu: hdparm: Update to 9.56.

* gnu/packages/linux.scm (hdparm): Update to 9.56.

5 years agognu: perftest: Update to 4.4-0.4.
Tobias Geerinckx-Rice [Wed, 10 Oct 2018 21:43:23 +0000 (23:43 +0200)]
gnu: perftest: Update to 4.4-0.4.

* gnu/packages/linux.scm (perftest): Update to 4.4-0.4.

5 years agognu: haveged: Mark up description.
Tobias Geerinckx-Rice [Wed, 10 Oct 2018 21:00:38 +0000 (23:00 +0200)]
gnu: haveged: Mark up description.

* gnu/packages/linux.scm (haveged)[description]: Use @dfn{} and
split into two paragraphs.

5 years agognu: haveged: Update to 1.9.4.
Tobias Geerinckx-Rice [Wed, 10 Oct 2018 20:59:13 +0000 (22:59 +0200)]
gnu: haveged: Update to 1.9.4.

* gnu/packages/linux.scm (haveged): Update to 1.9.4.
[source]: Use GIT-FETCH and GIT-FILE-NAME from new (development) home.

5 years agognu: python-pickleshare: Update to 0.7.5.
Tobias Geerinckx-Rice [Wed, 10 Oct 2018 20:44:16 +0000 (22:44 +0200)]
gnu: python-pickleshare: Update to 0.7.5.

* gnu/packages/databases.scm (python-pickleshare): Update to 0.7.5.

5 years agognu: ranger: More test tweaks.
Tobias Geerinckx-Rice [Wed, 10 Oct 2018 20:28:40 +0000 (22:28 +0200)]
gnu: ranger: More test tweaks.

There's no functional difference between 'make test_pytest' and running
'py.test' directly, but there may be in future.

This follows up on commit 14173b3c6765bd8fcb2b12ea28fc27226645c7e1.

* gnu/packages/disk.scm (ranger)[arguments]: Use #:test-target to run
the (same) tests through 'make'.
[native-inputs]: Remove left-over python-flake8 and python-pylint.

5 years agognu: Add kicad-symbols.
Danny Milosavljevic [Wed, 10 Oct 2018 10:16:51 +0000 (12:16 +0200)]
gnu: Add kicad-symbols.

* gnu/packages/engineering.scm (kicad-symbols): New variable.

5 years agognu: ranger: Update to 1.9.2.
Tobias Geerinckx-Rice [Wed, 10 Oct 2018 20:05:37 +0000 (22:05 +0200)]
gnu: ranger: Update to 1.9.2.

* gnu/packages/disk.scm (ranger): Update to 1.9.2.
[native-inputs]: Order alphabetically.
[arguments]: Actually run tests and remove useless #:test-target.

5 years agoOrder (gnu packages disk) module imports alphabetically.
Tobias Geerinckx-Rice [Wed, 10 Oct 2018 20:10:52 +0000 (22:10 +0200)]
Order (gnu packages disk) module imports alphabetically.

* gnu/packages/disk.scm (define-module): Order module imports
alphabetically.

5 years agognu: ndctl: Update to 63.
Tobias Geerinckx-Rice [Wed, 10 Oct 2018 19:10:23 +0000 (21:10 +0200)]
gnu: ndctl: Update to 63.

* gnu/packages/disk.scm (ndctl): Update to 63.
[source]: Use GIT-FILE-NAME.
[native-inputs]: Add bash-completion.
[arguments]: Add '--disable-asciidoctor' and '--without-systemd'
 #:configure-flags.  Don't bother patching unused ./autogen.sh in
'patch-FHS-file-names' phase.

5 years agognu: libblockdev: Update to 2.20.
Tobias Geerinckx-Rice [Wed, 10 Oct 2018 18:05:18 +0000 (20:05 +0200)]
gnu: libblockdev: Update to 2.20.

* gnu/packages/disk.scm (libblockdev): Update to 2.20.
[license]: Update to match fixed licence headers.

5 years agognu: volume-key: Update to 0.3.12.
Tobias Geerinckx-Rice [Wed, 10 Oct 2018 17:45:27 +0000 (19:45 +0200)]
gnu: volume-key: Update to 0.3.12.

* gnu/packages/disk.scm (volume-key): Update to 0.3.12.

5 years agodoc: Add recommendations for good origin URLs.
Pierre Neidhardt [Wed, 10 Oct 2018 16:06:08 +0000 (18:06 +0200)]
doc: Add recommendations for good origin URLs.

* doc/contributing.texi (Submitting Patches): URL recommendations.

5 years agognu: emacs-slime: Update to 2.22.
Pierre Neidhardt [Wed, 10 Oct 2018 15:45:07 +0000 (17:45 +0200)]
gnu: emacs-slime: Update to 2.22.

* gnu/packages/emacs.scm (emacs-slime): Update to 2.22.

5 years agognu: emacs-evil-collection: Update to 0.0.1.
Pierre Neidhardt [Wed, 10 Oct 2018 15:43:51 +0000 (17:43 +0200)]
gnu: emacs-evil-collection: Update to 0.0.1.

* gnu/packages/emacs.scm (emacs-evil-collection): Update to 0.0.1.

5 years agoetc: Use git-file-name if origin is git-fetch.
Pierre Neidhardt [Wed, 10 Oct 2018 15:33:42 +0000 (17:33 +0200)]
etc: Use git-file-name if origin is git-fetch.

* etc/snippets/scheme-mode/guix-origin: Use git-file-name.

5 years agognu: Add numlockx.
Pierre Neidhardt [Wed, 10 Oct 2018 15:32:53 +0000 (17:32 +0200)]
gnu: Add numlockx.

* gnu/packages/xdisorg.scm (numlockx): New variable.

5 years agoself: Use Guile 2.2 unconditionally for recent 'guix pull'.
Ludovic Courtès [Wed, 10 Oct 2018 12:54:18 +0000 (14:54 +0200)]
self: Use Guile 2.2 unconditionally for recent 'guix pull'.

Fixes <https://bugs.gnu.org/32929>.
Reported by Michael Bowcutt <mwb71@case.edu>.

* guix/self.scm (guix-derivation)[guile]: Use "2.2" when PULL-VERSION >= 1.
Likewise for the #:guile-version argument.

5 years agognu: guile-next: Update to 2.9.1.
Ludovic Courtès [Wed, 10 Oct 2018 12:48:46 +0000 (14:48 +0200)]
gnu: guile-next: Update to 2.9.1.

* gnu/packages/guile.scm (guile-next): Update to 2.9.1.
[native-inputs, arguments]: Remove.
[properties]: New field.

5 years agognu: openal: Update source and home page URLs.
Ludovic Courtès [Wed, 10 Oct 2018 12:30:39 +0000 (14:30 +0200)]
gnu: openal: Update source and home page URLs.

Fixes <https://bugs.gnu.org/33000>.
Reported by Nam Nguyen <namn@berkeley.edu>.

* gnu/packages/audio.scm (openal)[source, home-page]: Update URLs.

5 years agognu: haunt: Make sure Guile-CommonMark and Guile-Reader are always visible.
Ludovic Courtès [Wed, 10 Oct 2018 09:49:47 +0000 (11:49 +0200)]
gnu: haunt: Make sure Guile-CommonMark and Guile-Reader are always visible.

* gnu/packages/guile.scm (haunt)[arguments]: In 'wrap-haunt' phase, add
Guile-Reader and Guile-CommonMark to the search paths.

5 years agognu: Add kdenlive.
Mark Meyer [Sat, 22 Sep 2018 19:28:25 +0000 (21:28 +0200)]
gnu: Add kdenlive.

* gnu/packages/kde.scm (kdenlive): New variable.

Co-authored-by: Gábor Boskovits <boskovits@gmail.com>
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
5 years agognu: mlt: Prepare for kdenlive.
Mark Meyer [Fri, 14 Sep 2018 20:58:29 +0000 (22:58 +0200)]
gnu: mlt: Prepare for kdenlive.

* gnu/packages/video.scm (mlt): Update to 6.10.0.
[inputs]: Add frei0r-plugins, gdk-pixbuf, gtk+-2, qtbase,qtsvg.
[make-flags]: Add "CXX=g++ -std=gnu++11".

Co-authored-by: Gábor Boskovits <boskovits@gmail.com>
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
5 years agognu: lisp.scm: Arrange imported modules alphabetically.
Efraim Flashner [Tue, 9 Oct 2018 17:30:35 +0000 (20:30 +0300)]
gnu: lisp.scm: Arrange imported modules alphabetically.

* gnu/packages/lisp.scm: Arrange imported modules alphabetically.

5 years agognu: clisp: Update to 2.49.92.
Efraim Flashner [Tue, 9 Oct 2018 17:27:37 +0000 (20:27 +0300)]
gnu: clisp: Update to 2.49.92.

* gnu/packages/lisp.scm (clisp): Update to 2.49.92.
[source]: Switch to git-fetch. Remove unneeded patch.
[arguments]: Remove '--enable-portability' flag, add CFLAGS for
armhf-linux. Update list of files needing substitutions in custom
'patch-sh-and-pwd phase.
[home-page]: Update to new home-page.
* gnu/packages/patches/clisp-glibc-2.26.patch: Remove file.
& gnu/local.mk (dist_patch_DATA): Remove it.

5 years agognu: vkd3d: Update to 1.1.
Rutger Helling [Wed, 10 Oct 2018 07:32:48 +0000 (09:32 +0200)]
gnu: vkd3d: Update to 1.1.

* gnu/packages/vulkan.scm (vkd3d): Update to 1.1.

5 years agognu: java-w3c-svg: Update synopsis and description.
Danny Milosavljevic [Tue, 9 Oct 2018 15:39:10 +0000 (17:39 +0200)]
gnu: java-w3c-svg: Update synopsis and description.

* gnu/packages/batik.scm (java-w3c-svg-1.0)[synopsis]: Modify.
[description]: Modify.
(java-w3c-svg)[synopsis]: Modify.
[description]: Modify.

5 years agognu: java-w3c-svg: Fix build.
Danny Milosavljevic [Tue, 9 Oct 2018 15:38:17 +0000 (17:38 +0200)]
gnu: java-w3c-svg: Fix build.

Reported-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
* gnu/packages/batik.scm (java-w3c-svg)[arguments]<#:phases>: Delete
"patch-interface" phase.

5 years agoguix build: '-f' accepts file-like objects.
Ludovic Courtès [Tue, 9 Oct 2018 16:52:37 +0000 (18:52 +0200)]
guix build: '-f' accepts file-like objects.

* guix/scripts/build.scm (options->things-to-build)[validate-type]:
Check for 'file-like?'.
(options->derivations): Accept 'file-like?'.
* tests/guix-build.sh: Add a test with 'computed-file'.
* doc/guix.texi (Additional Build Options): Mention file-like objects.

5 years agognu: Add ttf2pt1.
Ludovic Courtès [Tue, 9 Oct 2018 13:21:54 +0000 (15:21 +0200)]
gnu: Add ttf2pt1.

* gnu/packages/fontutils.scm (ttf2pt1): New variable.

5 years agoprofiles: Make Geiser happy.
Ludovic Courtès [Tue, 9 Oct 2018 09:49:26 +0000 (11:49 +0200)]
profiles: Make Geiser happy.

* guix/profiles.scm (manual-database)[config.scm]: Use ungexp/quote
trick to placate Geiser, which otherwise thinks it's in (guix config).

5 years agopull: '-l' now honors '-p'.
Ludovic Courtès [Tue, 9 Oct 2018 08:52:39 +0000 (10:52 +0200)]
pull: '-l' now honors '-p'.

* guix/scripts/pull.scm (process-query): Add 'profile' parameter and
remove 'profile' local variable.
(guix-pull): Adjust caller.

5 years agostatus: Gracefully handle invalid UTF-8 in build logs.
Ludovic Courtès [Tue, 9 Oct 2018 07:53:02 +0000 (09:53 +0200)]
status: Gracefully handle invalid UTF-8 in build logs.

* guix/status.scm (maybe-utf8->string): New procedure.
(build-event-output-port): Use it in lieu of 'utf8->string'.
* tests/status.scm ("build-output-port, UTF-8")
("current-build-output-port, UTF-8 + garbage"): New tests.

5 years agotests: "make check-system" produces colored output.
Ludovic Courtès [Tue, 9 Oct 2018 07:24:24 +0000 (09:24 +0200)]
tests: "make check-system" produces colored output.

* build-aux/run-system-tests.scm (run-system-tests): Use 'with-status-report'.

5 years agognu: bs1770gain: Update to 0.5.0.
Efraim Flashner [Tue, 9 Oct 2018 09:04:13 +0000 (12:04 +0300)]
gnu: bs1770gain: Update to 0.5.0.

* gnu/packages/audio.scm (bs1770gain): Update to 0.5.0.

5 years agognu: augeas: Update to 1.11.0.
Efraim Flashner [Tue, 9 Oct 2018 08:01:39 +0000 (11:01 +0300)]
gnu: augeas: Update to 1.11.0.

* gnu/packages/augeas.scm (augeas): Update to 1.11.0.
[source]: Remove snippet.

5 years ago* gnu: agg: Replace bootstrap phase.
Efraim Flashner [Tue, 9 Oct 2018 07:32:16 +0000 (10:32 +0300)]
* gnu: agg: Replace bootstrap phase.

* gnu/packages/graphics.scm (agg)[arguments]: Remove custom 'autoreconf
phase and replace default 'bootstrap phase. Use INVOKE.
[native-inputs]: Remove bash.

5 years agognu: agg: Don't build examples.
Efraim Flashner [Tue, 9 Oct 2018 07:31:02 +0000 (10:31 +0300)]
gnu: agg: Don't build examples.

* gnu/packages/graphics.scm (agg)[arguments]: Disable building the
examples.

5 years agognu: abiword: Remove wmf support.
Efraim Flashner [Tue, 9 Oct 2018 06:56:02 +0000 (09:56 +0300)]
gnu: abiword: Remove wmf support.

* gnu/packages/abiword.scm (abiword)[arguments]: Remove 'wmf' from the
list of enabled plugins.

5 years agognu: zstd: Don't use unstable tarball.
Tobias Geerinckx-Rice [Tue, 9 Oct 2018 03:46:00 +0000 (05:46 +0200)]
gnu: zstd: Don't use unstable tarball.

* gnu/packages/compression.scm (zstd)[source]: Use release archive.

5 years agognu: unison: End all phases with #t.
Tobias Geerinckx-Rice [Mon, 8 Oct 2018 14:38:27 +0000 (16:38 +0200)]
gnu: unison: End all phases with #t.

* gnu/packages/ocaml.scm (unison)[arguments]: End all phases with #t.

5 years agognu: docx2txt: End phases with #t.
Tobias Geerinckx-Rice [Mon, 8 Oct 2018 14:20:19 +0000 (16:20 +0200)]
gnu: docx2txt: End phases with #t.

* gnu/packages/textutils.scm (docx2txt)[arguments]: End 'fix-install'
phase with #t.

5 years agognu: zstd: Update to 1.3.6.
Tobias Geerinckx-Rice [Tue, 9 Oct 2018 03:32:35 +0000 (05:32 +0200)]
gnu: zstd: Update to 1.3.6.

* gnu/packages/compression.scm (zstd): Update to 1.3.6.
[source]: Remove merged patches.
* gnu/packages/patches/zstd-fix-stdin-list-test.patch,
gnu/packages/patches/zstd-fix-stdin-list-without-tty.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.

5 years agognu: Add gimp-resynthesizer.
Thorsten Wilms [Mon, 8 Oct 2018 19:11:10 +0000 (21:11 +0200)]
gnu: Add gimp-resynthesizer.

* gnu/packages/gimp.scm (gimp-resynthesizer): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: Add emacs-colum-marker.
Thorsten Wilms [Mon, 8 Oct 2018 19:12:54 +0000 (21:12 +0200)]
gnu: Add emacs-colum-marker.

* gnu/packages/emacs.scm (emacs-colum-marker): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: Add filtlong.
pimi [Mon, 8 Oct 2018 09:17:41 +0000 (11:17 +0200)]
gnu: Add filtlong.

* gnu/packages/bioinformatics.scm (filtlong): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: emacs-google-translate: Update to 0.11.15.
Mathieu Lirzin [Sun, 7 Oct 2018 15:53:04 +0000 (17:53 +0200)]
gnu: emacs-google-translate: Update to 0.11.15.

* gnu/packages/emacs.scm (emacs-google-translate): Update to 0.11.15.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: Add font-sil-charis.
Ludovic Courtès [Mon, 8 Oct 2018 15:35:22 +0000 (17:35 +0200)]
gnu: Add font-sil-charis.

* gnu/packages/fonts.scm (font-sil-charis): New variable.

5 years agognu: Add font-sil-gentium.
Ludovic Courtès [Mon, 8 Oct 2018 15:29:34 +0000 (17:29 +0200)]
gnu: Add font-sil-gentium.

* gnu/packages/fonts.scm (font-sil-gentium): New variable.

5 years agognu: Add r-dnabarcodes.
Ricardo Wurmus [Mon, 8 Oct 2018 12:18:48 +0000 (14:18 +0200)]
gnu: Add r-dnabarcodes.

* gnu/packages/bioconductor.scm (r-dnabarcodes): New variable.

5 years agognu: Add picard.
Christopher Baines [Sun, 7 Oct 2018 15:32:27 +0000 (16:32 +0100)]
gnu: Add picard.

* gnu/packages/music.scm (picard): New variable.

5 years agognu: python2-backports-functools-lru-cache: Update to 1.5.
Ben Woodcroft [Thu, 4 Oct 2018 05:48:04 +0000 (15:48 +1000)]
gnu: python2-backports-functools-lru-cache: Update to 1.5.

* gnu/packages/python.scm (python2-backports-functools-lru-cache): Update to 1.5.

5 years agognu: c-toxcore: Update to 0.2.8.
Rutger Helling [Mon, 8 Oct 2018 06:23:10 +0000 (08:23 +0200)]
gnu: c-toxcore: Update to 0.2.8.

* gnu/packages/messaging.scm (c-toxcore): Update to 0.2.8.

5 years agognu: crawl, crawl-tiles: Update to 0.22.1.
Kei Kebreau [Mon, 8 Oct 2018 00:14:02 +0000 (20:14 -0400)]
gnu: crawl, crawl-tiles: Update to 0.22.1.

* gnu/packages/games.scm (crawl, crawl-tiles): Update to 0.22.1.
* gnu/packages/patches/crawl-upgrade-saves.patch: Update accordingly.

5 years agognu: Remove Go 1.10.
Leo Famulari [Mon, 8 Oct 2018 00:15:31 +0000 (20:15 -0400)]
gnu: Remove Go 1.10.

* gnu/packages/golang.scm (go-1.10): Remove variable.
(go-1.11)[arguments]: Remove unnecessary environment variable from
'set-bootstrap-variables' phase.

5 years agobuild-system/glib-or-gtk: Build 'in-source' by default.
Leo Famulari [Thu, 4 Oct 2018 15:30:23 +0000 (11:30 -0400)]
build-system/glib-or-gtk: Build 'in-source' by default.

* guix/build-system/glib-or-gtk.scm (glib-or-gtk-build): Change to
'out-of-source? #f'.
* gnu/packages/audio.scm (audacity)[arguments]: Use the default 'out-of-source?'
setting.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.

5 years agognu: ncmpc: Update to 0.32.
Leo Famulari [Sun, 7 Oct 2018 19:08:46 +0000 (15:08 -0400)]
gnu: ncmpc: Update to 0.32.

* gnu/packages/mpd.scm (ncmpc): Update to 0.32.
[inputs]: Add boost, pcre, and python-sphinx. Remove glib.
[arguments]: Install the man pages correctly. Remove unnecessary configure flag.

5 years agognu: borg: The backup client cannot override the server-side storage quota.
Leo Famulari [Sun, 7 Oct 2018 02:43:35 +0000 (22:43 -0400)]
gnu: borg: The backup client cannot override the server-side storage quota.

* gnu/packages/patches/borg-respect-storage-quota.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (borg)[source]: Use it.

5 years agognu: mes: Update to 0.18.
Jan Nieuwenhuizen [Sat, 6 Oct 2018 22:35:23 +0000 (00:35 +0200)]
gnu: mes: Update to 0.18.

* gnu/packages/patches/mes-nyacc-0.86.0.patch: Removef file.
* gnu/local.mk (dist_patch_DATA): Remove entry.
* gnu/packages/mes.scm (mes): Update to 0.18.

5 years agognu: Add java-jakarta-regexp.
Danny Milosavljevic [Sun, 7 Oct 2018 13:28:37 +0000 (15:28 +0200)]
gnu: Add java-jakarta-regexp.

* gnu/packages/java.scm (java-jakarta-regexp): New variable.

5 years agognu: java-xmlgraphics-commons: Add dependency to java-asm.
Danny Milosavljevic [Sun, 7 Oct 2018 12:47:36 +0000 (14:47 +0200)]
gnu: java-xmlgraphics-commons: Add dependency to java-asm.

* gnu/packages/batik.scm (java-xmlgraphics-commons)[native-inputs]: Add
java-asm.

5 years agognu: java-xmlgraphics-commons: Add dependency to java-cglib.
Danny Milosavljevic [Sun, 7 Oct 2018 12:46:26 +0000 (14:46 +0200)]
gnu: java-xmlgraphics-commons: Add dependency to java-cglib.

* gnu/packages/batik.scm (java-xmlgraphics-commons)[native-inputs]: Add
java-cglib.

5 years agognu: java-xmlgraphics-commons: Make error in tests fail the "check" phase.
Danny Milosavljevic [Sun, 7 Oct 2018 12:43:47 +0000 (14:43 +0200)]
gnu: java-xmlgraphics-commons: Make error in tests fail the "check" phase.

* gnu/packages/batik.scm (java-xmlgraphics-commons)[arguments]<#:test-target>:
Use "junit" test target.

5 years agognu: java-xmlgraphics-commons: Remove bundled dependencies.
Danny Milosavljevic [Sun, 7 Oct 2018 12:42:15 +0000 (14:42 +0200)]
gnu: java-xmlgraphics-commons: Remove bundled dependencies.

* gnu/packages/batik.scm (java-xmlgraphics-commons): Remove bundled
dependencies.

5 years agognu: Add java-xmlgraphics-commons.
Danny Milosavljevic [Sun, 7 Oct 2018 12:32:05 +0000 (14:32 +0200)]
gnu: Add java-xmlgraphics-commons.

* gnu/packages/batik.scm (java-xmlgraphics-commons): New variable.

5 years agognu: Add java-w3c-sac.
Danny Milosavljevic [Sun, 7 Oct 2018 12:16:01 +0000 (14:16 +0200)]
gnu: Add java-w3c-sac.

* gnu/packages/batik.scm (java-w3c-sac): New variable.

5 years agognu: Add java-w3c-svg.
Danny Milosavljevic [Sun, 7 Oct 2018 12:15:21 +0000 (14:15 +0200)]
gnu: Add java-w3c-svg.

* gnu/packages/batik.scm (java-w3c-svg-1.0, java-w3c-svg): New variables.

5 years agognu: Add java-w3c-smil.
Danny Milosavljevic [Sun, 7 Oct 2018 12:14:13 +0000 (14:14 +0200)]
gnu: Add java-w3c-smil.

* gnu/packages/batik.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

5 years agognu: mercurial: Update to 4.6.2.
fis trivial [Sun, 7 Oct 2018 09:03:40 +0000 (09:03 +0000)]
gnu: mercurial: Update to 4.6.2.

* gnu/packages/version-control.scm (mercurial): Update to 4.6.2.

5 years agognu: pd: Update to 0.49-0.
宋文武 [Sun, 7 Oct 2018 06:55:55 +0000 (14:55 +0800)]
gnu: pd: Update to 0.49-0.

* gnu/packages/music.scm (pd): Update to 0.49-0.

5 years agognu: wcslib: Update to 5.20.
Tobias Geerinckx-Rice [Sat, 6 Oct 2018 16:18:22 +0000 (18:18 +0200)]
gnu: wcslib: Update to 5.20.

* gnu/packages/astronomy.scm (wcslib): Update to 5.20.
[arguments]: Build parallelly.

5 years agognu: git: Update to 2.19.1 [fixes CVE-2018-17456].
Leo Famulari [Sat, 6 Oct 2018 07:32:12 +0000 (03:32 -0400)]
gnu: git: Update to 2.19.1 [fixes CVE-2018-17456].

* gnu/packages/version-control.scm (git): Update to 2.19.1.

5 years agognu: Add ngless.
Ricardo Wurmus [Tue, 2 Oct 2018 16:38:14 +0000 (18:38 +0200)]
gnu: Add ngless.

* gnu/packages/bioinformatics.scm (ngless): New variable.

5 years agognu: Add ghc-safeio.
Ricardo Wurmus [Tue, 2 Oct 2018 16:38:12 +0000 (18:38 +0200)]
gnu: Add ghc-safeio.

* gnu/packages/haskell.scm (ghc-safeio): New variable.

5 years agognu: Add ghc-file-embed.
Ricardo Wurmus [Tue, 2 Oct 2018 16:38:10 +0000 (18:38 +0200)]
gnu: Add ghc-file-embed.

* gnu/packages/haskell.scm (ghc-file-embed): New variable.

5 years agognu: Add ghc-configurator.
Ricardo Wurmus [Tue, 2 Oct 2018 16:38:08 +0000 (18:38 +0200)]
gnu: Add ghc-configurator.

* gnu/packages/haskell.scm (ghc-configurator): New variable.

5 years agognu: Add ghc-bytestring-lexing.
Ricardo Wurmus [Tue, 2 Oct 2018 16:38:06 +0000 (18:38 +0200)]
gnu: Add ghc-bytestring-lexing.

* gnu/packages/haskell.scm (ghc-bytestring-lexing): New variable.

5 years agognu: Add ghc-inline-c-cpp.
Ricardo Wurmus [Tue, 2 Oct 2018 16:38:04 +0000 (18:38 +0200)]
gnu: Add ghc-inline-c-cpp.

* gnu/packages/haskell.scm (ghc-inline-c-cpp): New variable.

5 years agognu: Add ghc-safe-exceptions.
Ricardo Wurmus [Tue, 2 Oct 2018 16:38:02 +0000 (18:38 +0200)]
gnu: Add ghc-safe-exceptions.

* gnu/packages/haskell.scm (ghc-safe-exceptions): New variable.