jackhill/guix/guix.git
3 years agognu: python-crashtest: Update to 0.3.1.
Tobias Geerinckx-Rice [Thu, 13 Aug 2020 14:08:55 +0000 (16:08 +0200)]
gnu: python-crashtest: Update to 0.3.1.

* gnu/packages/python-xyz.scm (python-crashtest): Update to 0.3.1.

3 years agognu: opencv: Fix build with Jasper 2.0.19.
Tobias Geerinckx-Rice [Thu, 13 Aug 2020 13:26:45 +0000 (15:26 +0200)]
gnu: opencv: Fix build with Jasper 2.0.19.

* gnu/packages/image-processing.scm (opencv)[source]: Add patch.
* gnu/packages/patches/opencv-fix-build-of-grfmt_jpeg2000.cpp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

3 years agognu: php: Update to 7.4.9.
Tobias Geerinckx-Rice [Thu, 13 Aug 2020 03:26:02 +0000 (05:26 +0200)]
gnu: php: Update to 7.4.9.

* gnu/packages/php.scm (php): Update to 7.4.9.

3 years agognu: yapet: Update to 2.4.
Tobias Geerinckx-Rice [Thu, 13 Aug 2020 03:22:57 +0000 (05:22 +0200)]
gnu: yapet: Update to 2.4.

* gnu/packages/password-utils.scm (yapet): Update to 2.4.

3 years agognu: python-aenum: Update to 2.2.4.
Tobias Geerinckx-Rice [Thu, 13 Aug 2020 02:51:10 +0000 (04:51 +0200)]
gnu: python-aenum: Update to 2.2.4.

* gnu/packages/python-xyz.scm (python-aenum): Update to 2.2.4.

3 years agognu: ceph: Update to 14.2.11.
Tobias Geerinckx-Rice [Thu, 13 Aug 2020 02:50:53 +0000 (04:50 +0200)]
gnu: ceph: Update to 14.2.11.

* gnu/packages/storage.scm (ceph): Update to 14.2.11.

3 years agognu: lxqt-panel: Show icons in menus.
Timotej Lazar [Mon, 10 Aug 2020 11:43:48 +0000 (13:43 +0200)]
gnu: lxqt-panel: Show icons in menus.

* gnu/packages/lxqt.scm (lxqt-panel)[propagated-inputs]: Add lxmenu-data.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
3 years agognu: cpuid: Update to 20200427.
Michael Rohleder [Wed, 12 Aug 2020 15:42:50 +0000 (17:42 +0200)]
gnu: cpuid: Update to 20200427.

* gnu/packages/linux.scm (cpuid): Update to 20200427.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
3 years agognu: git-annex: Update to 8.20200810.
Kyle Meyer [Tue, 11 Aug 2020 13:53:39 +0000 (09:53 -0400)]
gnu: git-annex: Update to 8.20200810.

* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20200810.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
3 years agognu: dlib: Install shared library.
Efraim Flashner [Thu, 13 Aug 2020 08:29:08 +0000 (11:29 +0300)]
gnu: dlib: Install shared library.

Reported by Hamzeh Nasajpour <h.nasajpour@pantherx.org>.

* gnu/packages/machine-learning.scm (dlib)[arguments]: Add
configure-flag to build shared library. Remove custom
'delete-static-library phase.

3 years agognu: Added drawpile (UPnP support pending) at version 2.1.17
your friendly localhost admin [Wed, 5 Aug 2020 22:23:34 +0000 (00:23 +0200)]
gnu: Added drawpile (UPnP support pending) at version 2.1.17

* gnu/packages/graphics.scm (drawpile): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
3 years agognu: httpd: Update to 2.4.46.
Tobias Geerinckx-Rice [Wed, 12 Aug 2020 22:16:51 +0000 (00:16 +0200)]
gnu: httpd: Update to 2.4.46.

* gnu/packages/web.scm (httpd): Update to 2.4.46.

3 years agognu: nginx: Update to 1.19.2.
Tobias Geerinckx-Rice [Wed, 12 Aug 2020 21:40:21 +0000 (23:40 +0200)]
gnu: nginx: Update to 1.19.2.

* gnu/packages/web.scm (nginx): Update to 1.19.2.

3 years agognu: nginx-documentation: Update to 1.19.2-2581-324ca14c3003.
Tobias Geerinckx-Rice [Wed, 12 Aug 2020 21:36:43 +0000 (23:36 +0200)]
gnu: nginx-documentation: Update to 1.19.2-2581-324ca14c3003.

* gnu/packages/web.scm (nginx-documentation): Update to 1.19.2-2581-324ca14c3003.

3 years agognu: perl-catalyst-view-tt: Update to 0.45.
Tobias Geerinckx-Rice [Wed, 12 Aug 2020 21:33:06 +0000 (23:33 +0200)]
gnu: perl-catalyst-view-tt: Update to 0.45.

* gnu/packages/web.scm (perl-catalyst-view-tt): Update to 0.45.

3 years agognu: luakit: Update to 2.2.
Tobias Geerinckx-Rice [Wed, 12 Aug 2020 21:26:22 +0000 (23:26 +0200)]
gnu: luakit: Update to 2.2.

* gnu/packages/web-browsers.scm (luakit): Update to 2.2.

3 years agognu: bspwm: Update to 0.9.10.
Tobias Geerinckx-Rice [Wed, 12 Aug 2020 21:24:04 +0000 (23:24 +0200)]
gnu: bspwm: Update to 0.9.10.

* gnu/packages/wm.scm (bspwm): Update to 0.9.10.

3 years agognu: conda: Update to 4.8.3.
Ricardo Wurmus [Wed, 12 Aug 2020 22:00:54 +0000 (00:00 +0200)]
gnu: conda: Update to 4.8.3.

* gnu/packages/package-management.scm (python-conda): Define as deprecated
alias for conda.
(python2-conda): Remove variable.
(conda)[arguments]: Add phases "fix-permissions",
"correct-python-executable-name", "do-not-use-python-root-as-prefix", and
"init"; remove phase "remove-failing-tests"; update "check" phase.
[inputs]: Add python-wrapper.
[native-inputs]: Move them all to...
[propagated-inputs]: ...this field.  Add python-conda-package-handling,
python-tqdm, and zstd.
[description]: Remove line about Conda as a library.

3 years agognu: python-pycosat: Update to 0.6.3.
Ricardo Wurmus [Wed, 12 Aug 2020 21:35:08 +0000 (23:35 +0200)]
gnu: python-pycosat: Update to 0.6.3.

* gnu/packages/python-xyz.scm (python-pycosat): Update to 0.6.3.

3 years agognu: tophat: Hide default GCC.
Ricardo Wurmus [Wed, 12 Aug 2020 19:55:06 +0000 (21:55 +0200)]
gnu: tophat: Hide default GCC.

* gnu/packages/bioinformatics.scm (tophat)[arguments]: Add build phase
"hide-default-gcc".

3 years agognu: Add python-conda-package-handling.
Ricardo Wurmus [Wed, 12 Aug 2020 19:50:42 +0000 (21:50 +0200)]
gnu: Add python-conda-package-handling.

* gnu/packages/package-management.scm (python-conda-package-handling): New
variable.

3 years agognu: libgtextutils: Hide default GCC.
Ricardo Wurmus [Wed, 12 Aug 2020 19:25:18 +0000 (21:25 +0200)]
gnu: libgtextutils: Hide default GCC.

* gnu/packages/textutils.scm (libgtextutils)[arguments]: Add phase
hide-default-gcc.

3 years agognu: musescore: Update to 3.5.
Nicolas Goaziou [Wed, 12 Aug 2020 16:51:06 +0000 (18:51 +0200)]
gnu: musescore: Update to 3.5.

* gnu/packages/music.scm (musescore): Update to 3.5.
[origin]: Remove unused google_analytics library.

3 years agognu: Add emacs-explain-pause-mode.
Morgan Smith [Wed, 12 Aug 2020 16:45:48 +0000 (19:45 +0300)]
gnu: Add emacs-explain-pause-mode.

* gnu/packages/emacs-xyz.scm (emacs-explain-pause-mode): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
3 years agognu: emacs-org-superstar: Update to 1.3.0.
Nicolas Goaziou [Wed, 12 Aug 2020 15:41:56 +0000 (17:41 +0200)]
gnu: emacs-org-superstar: Update to 1.3.0.

* gnu/packages/emacs-xyz.scm (emacs-org-superstar): Update to 1.3.0.

3 years agognu: Add emacs-kana.
Morgan Smith [Wed, 12 Aug 2020 15:35:21 +0000 (17:35 +0200)]
gnu: Add emacs-kana.

* gnu/packages/emacs-xyz.scm (emacs-kana): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
3 years agognu: Add emacs-kanji.
Morgan Smith [Wed, 12 Aug 2020 15:22:50 +0000 (17:22 +0200)]
gnu: Add emacs-kanji.

* gnu/packages/emacs-xyz.scm (emacs-kanji): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
3 years agognu: freedink-engine: Fix SDL hints.
Jesse Gibbons [Mon, 10 Feb 2020 17:18:57 +0000 (10:18 -0700)]
gnu: freedink-engine: Fix SDL hints.

* gnu/packages/games.scm: freedink: [patches]: Add fix.
* gnu/packages/patches/freedink-engine-fix-sdl-hints.patch: New file.
* gnu/local.mk: Add it.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
3 years agognu: freedink-engine: Call autoreconf.
Jesse Gibbons [Fri, 3 Jul 2020 22:54:21 +0000 (16:54 -0600)]
gnu: freedink-engine: Call autoreconf.

* gnu/packages/games.scm: freedink-engine (phases): add 'autoreconf

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
3 years agognu: dovecot: Update to 2.3.11.3 [security fixes].
Tobias Geerinckx-Rice [Wed, 12 Aug 2020 13:27:16 +0000 (15:27 +0200)]
gnu: dovecot: Update to 2.3.11.3 [security fixes].

Fixes CVE-2020-12100, CVE-2020-12673, CVE-2020-10967, and CVE-2020-12674.

* gnu/packages/mail.scm (dovecot): Update to 2.3.11.3.

3 years agohaskell-build-system: register: Remove references to the doc output.
Ricardo Wurmus [Tue, 16 Jun 2020 20:34:37 +0000 (22:34 +0200)]
haskell-build-system: register: Remove references to the doc output.

* guix/build/haskell-build-system.scm (register): Strip references to the doc
output from the generated package config files; move the haddock files from
the "doc" output to the "lib" output.

3 years agohaskell-build-system: register: Respect lib output.
Ricardo Wurmus [Tue, 16 Jun 2020 20:32:09 +0000 (22:32 +0200)]
haskell-build-system: register: Respect lib output.

* guix/build/haskell-build-system.scm (register): Use lib output if it exists.

3 years agobuild-system/haskell: Add default output "static".
Ricardo Wurmus [Tue, 16 Jun 2020 20:28:54 +0000 (22:28 +0200)]
build-system/haskell: Add default output "static".

* guix/build-system/haskell.scm (lower): Add OUTPUTS keyword and add the
"static" output in the common case.
(haskell-build): Set the default value for the OUTPUTS keyword to include the
"static" output.
* guix/build/haskell-build-system.scm (install): Move static libraries to the
"static" output if it exists.

3 years agobuild-system/haskell: Configure to link with shared libraries.
Ricardo Wurmus [Wed, 24 Jun 2020 21:46:57 +0000 (23:46 +0200)]
build-system/haskell: Configure to link with shared libraries.

* guix/build/haskell-build-system.scm (configure): Add configure flags to
build shared libraries by default, to generate position independent code, and
to set the RUNPATH.

3 years agobuild-system/haskell: Refactor configure step.
Ricardo Wurmus [Wed, 24 Jun 2020 21:12:06 +0000 (23:12 +0200)]
build-system/haskell: Refactor configure step.

* guix/build/haskell-build-system.scm (configure): Replace append
with quasiquotes and splicing.

3 years agobuild-system/haskell: Support parallel builds.
Ricardo Wurmus [Tue, 16 Jun 2020 20:25:48 +0000 (22:25 +0200)]
build-system/haskell: Support parallel builds.

* guix/build-system/haskell.scm (haskell-build): Add keyword PARALLEL-BUILD?
and pass it on to the builder.
* guix/build/haskell-build-system.scm (build): Accept keyword PARALLEL-BUILD?
and pass the number of parallel jobs to GHC.

3 years agognu: Add ghc-8.8.
Timothy Sample [Sun, 3 May 2020 04:31:03 +0000 (00:31 -0400)]
gnu: Add ghc-8.8.

* gnu/packages/haskell.scm (ghc-8.8): New variable.

3 years agognu: r-car: Update to 3.0-9.
Ricardo Wurmus [Wed, 12 Aug 2020 10:00:11 +0000 (12:00 +0200)]
gnu: r-car: Update to 3.0-9.

* gnu/packages/statistics.scm (r-car): Update to 3.0-9.

3 years agognu: r-fit-models: Update to 0.64.
Ricardo Wurmus [Wed, 12 Aug 2020 10:00:08 +0000 (12:00 +0200)]
gnu: r-fit-models: Update to 0.64.

* gnu/packages/statistics.scm (r-fit-models): Update to 0.64.

3 years agognu: r-rrcov: Update to 1.5-5.
Ricardo Wurmus [Wed, 12 Aug 2020 10:00:05 +0000 (12:00 +0200)]
gnu: r-rrcov: Update to 1.5-5.

* gnu/packages/statistics.scm (r-rrcov): Update to 1.5-5.

3 years agognu: r-hmisc: Update to 4.4-1.
Ricardo Wurmus [Wed, 12 Aug 2020 10:00:02 +0000 (12:00 +0200)]
gnu: r-hmisc: Update to 4.4-1.

* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-1.
[propagated-inputs]: Remove r-acepack.

3 years agognu: r-tidyr: Update to 1.1.1.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:58 +0000 (11:59 +0200)]
gnu: r-tidyr: Update to 1.1.1.

* gnu/packages/statistics.scm (r-tidyr): Update to 1.1.1.
[propagated-inputs]: Remove r-rcpp and r-stringi; add r-cpp11.

3 years agognu: r-dt: Update to 0.15.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:53 +0000 (11:59 +0200)]
gnu: r-dt: Update to 0.15.

* gnu/packages/statistics.scm (r-dt): Update to 0.15.

3 years agognu: r-xml: Update to 3.99-0.5.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:49 +0000 (11:59 +0200)]
gnu: r-xml: Update to 3.99-0.5.

* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.5.

3 years agognu: r-rcpparmadillo: Update to 0.9.900.2.0.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:46 +0000 (11:59 +0200)]
gnu: r-rcpparmadillo: Update to 0.9.900.2.0.

* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.2.0.

3 years agognu: r-devtools: Update to 2.3.1.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:43 +0000 (11:59 +0200)]
gnu: r-devtools: Update to 2.3.1.

* gnu/packages/statistics.scm (r-devtools): Update to 2.3.1.
[propagated-inputs]: Remove r-crayon, r-digest, r-glue, and r-git2r.

3 years agognu: r-httr: Update to 1.4.2.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:37 +0000 (11:59 +0200)]
gnu: r-httr: Update to 1.4.2.

* gnu/packages/statistics.scm (r-httr): Update to 1.4.2.
[native-inputs]: Add r-knitr.

3 years agognu: r-data-table: Update to 1.13.0.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:33 +0000 (11:59 +0200)]
gnu: r-data-table: Update to 1.13.0.

* gnu/packages/statistics.scm (r-data-table): Update to 1.13.0.
[native-inputs]: Add r-knitr.

3 years agognu: r-dplyr: Update to 1.0.1.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:29 +0000 (11:59 +0200)]
gnu: r-dplyr: Update to 1.0.1.

* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.1.

3 years agognu: r-ggdendro: Update to 0.1.21.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:26 +0000 (11:59 +0200)]
gnu: r-ggdendro: Update to 0.1.21.

* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.21.
[propagated-inputs]: Remove r-knitr.
[native-inputs]: Add r-knitr.

3 years agognu: r-bit64: Update to 4.0.2.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:22 +0000 (11:59 +0200)]
gnu: r-bit64: Update to 4.0.2.

* gnu/packages/statistics.scm (r-bit64): Update to 4.0.2.

3 years agognu: r-bit: Update to 4.0.4.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:18 +0000 (11:59 +0200)]
gnu: r-bit: Update to 4.0.4.

* gnu/packages/statistics.scm (r-bit): Update to 4.0.4.
[native-inputs]: Add r-knitr.

3 years agognu: r-brms: Update to 2.13.5.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:14 +0000 (11:59 +0200)]
gnu: r-brms: Update to 2.13.5.

* gnu/packages/cran.scm (r-brms): Update to 2.13.5.

3 years agognu: r-rxnat: Update to 1.0.12.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:11 +0000 (11:59 +0200)]
gnu: r-rxnat: Update to 1.0.12.

* gnu/packages/cran.scm (r-rxnat): Update to 1.0.12.
[propagated-inputs]: Add r-dplyr.

3 years agognu: r-aws: Update to 2.4-3.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:07 +0000 (11:59 +0200)]
gnu: r-aws: Update to 2.4-3.

* gnu/packages/cran.scm (r-aws): Update to 2.4-3.

3 years agognu: r-rstanarm: Update to 2.21.1.
Ricardo Wurmus [Wed, 12 Aug 2020 09:59:04 +0000 (11:59 +0200)]
gnu: r-rstanarm: Update to 2.21.1.

* gnu/packages/cran.scm (r-rstanarm): Update to 2.21.1.
[native-inputs]: Add r-knitr.

3 years agognu: r-rstan: Update to 2.21.2.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:59 +0000 (11:58 +0200)]
gnu: r-rstan: Update to 2.21.2.

* gnu/packages/cran.scm (r-rstan): Update to 2.21.2.
[propagated-inputs]: Add r-withr.

3 years agognu: r-quanteda: Update to 2.1.1.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:55 +0000 (11:58 +0200)]
gnu: r-quanteda: Update to 2.1.1.

* gnu/packages/cran.scm (r-quanteda): Update to 2.1.1.

3 years agognu: r-shinycssloaders: Update to 1.0.0.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:52 +0000 (11:58 +0200)]
gnu: r-shinycssloaders: Update to 1.0.0.

* gnu/packages/cran.scm (r-shinycssloaders): Update to 1.0.0.

3 years agognu: r-adamethods: Update to 1.2.1.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:49 +0000 (11:58 +0200)]
gnu: r-adamethods: Update to 1.2.1.

* gnu/packages/cran.scm (r-adamethods): Update to 1.2.1.

3 years agognu: r-fda: Update to 5.1.5.1.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:46 +0000 (11:58 +0200)]
gnu: r-fda: Update to 5.1.5.1.

* gnu/packages/cran.scm (r-fda): Update to 5.1.5.1.

3 years agognu: r-rgdal: Update to 1.5-16.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:42 +0000 (11:58 +0200)]
gnu: r-rgdal: Update to 1.5-16.

* gnu/packages/cran.scm (r-rgdal): Update to 1.5-16.

3 years agognu: r-parameters: Update to 0.8.2.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:39 +0000 (11:58 +0200)]
gnu: r-parameters: Update to 0.8.2.

* gnu/packages/cran.scm (r-parameters): Update to 0.8.2.

3 years agognu: r-dalex: Update to 1.3.1.1.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:36 +0000 (11:58 +0200)]
gnu: r-dalex: Update to 1.3.1.1.

* gnu/packages/cran.scm (r-dalex): Update to 1.3.1.1.

3 years agognu: r-ibreakdown: Update to 1.3.1.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:33 +0000 (11:58 +0200)]
gnu: r-ibreakdown: Update to 1.3.1.

* gnu/packages/cran.scm (r-ibreakdown): Update to 1.3.1.

3 years agognu: r-ingredients: Update to 1.3.1.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:30 +0000 (11:58 +0200)]
gnu: r-ingredients: Update to 1.3.1.

* gnu/packages/cran.scm (r-ingredients): Update to 1.3.1.

3 years agognu: r-gbm: Update to 2.1.8.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:27 +0000 (11:58 +0200)]
gnu: r-gbm: Update to 2.1.8.

* gnu/packages/cran.scm (r-gbm): Update to 2.1.8.
[propagated-inputs]: Remove r-gridextra.
[native-inputs]: Add r-knitr.

3 years agognu: r-hierfstat: Update to 0.5-7.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:21 +0000 (11:58 +0200)]
gnu: r-hierfstat: Update to 0.5-7.

* gnu/packages/cran.scm (r-hierfstat): Update to 0.5-7.
[propagated-inputs]: Add r-gaston.
[native-inputs]: Add r-knitr.

3 years agognu: r-ibdreg: Update to 0.3.1.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:16 +0000 (11:58 +0200)]
gnu: r-ibdreg: Update to 0.3.1.

* gnu/packages/cran.scm (r-ibdreg): Update to 0.3.1.

3 years agognu: r-rms: Update to 6.0-1.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:13 +0000 (11:58 +0200)]
gnu: r-rms: Update to 6.0-1.

* gnu/packages/cran.scm (r-rms): Update to 6.0-1.

3 years agognu: r-sf: Update to 0.9-5.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:10 +0000 (11:58 +0200)]
gnu: r-sf: Update to 0.9-5.

* gnu/packages/cran.scm (r-sf): Update to 0.9-5.

3 years agognu: r-deldir: Update to 0.1-28.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:07 +0000 (11:58 +0200)]
gnu: r-deldir: Update to 0.1-28.

* gnu/packages/cran.scm (r-deldir): Update to 0.1-28.

3 years agognu: r-irkernel: Update to 1.1.1.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:03 +0000 (11:58 +0200)]
gnu: r-irkernel: Update to 1.1.1.

* gnu/packages/cran.scm (r-irkernel): Update to 1.1.1.

3 years agognu: r-lavaan: Update to 0.6-7.
Ricardo Wurmus [Wed, 12 Aug 2020 09:58:00 +0000 (11:58 +0200)]
gnu: r-lavaan: Update to 0.6-7.

* gnu/packages/cran.scm (r-lavaan): Update to 0.6-7.

3 years agognu: r-compositions: Update to 2.0-0.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:57 +0000 (11:57 +0200)]
gnu: r-compositions: Update to 2.0-0.

* gnu/packages/cran.scm (r-compositions): Update to 2.0-0.
[propagated-inputs]: Add r-mass.
[native-inputs]: Add r-knitr.

3 years agognu: r-epi: Update to 2.41.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:52 +0000 (11:57 +0200)]
gnu: r-epi: Update to 2.41.

* gnu/packages/cran.scm (r-epi): Update to 2.41.

3 years agognu: r-assertive: Update to 0.3-6.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:49 +0000 (11:57 +0200)]
gnu: r-assertive: Update to 0.3-6.

* gnu/packages/cran.scm (r-assertive): Update to 0.3-6.
[native-inputs]: Add r-knitr.

3 years agognu: r-assertive-datetimes: Update to 0.0-3.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:44 +0000 (11:57 +0200)]
gnu: r-assertive-datetimes: Update to 0.0-3.

* gnu/packages/cran.scm (r-assertive-datetimes): Update to 0.0-3.

3 years agognu: r-assertive-reflection: Update to 0.0-5.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:41 +0000 (11:57 +0200)]
gnu: r-assertive-reflection: Update to 0.0-5.

* gnu/packages/cran.scm (r-assertive-reflection): Update to 0.0-5.

3 years agognu: r-arm: Update to 1.11-2.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:38 +0000 (11:57 +0200)]
gnu: r-arm: Update to 1.11-2.

* gnu/packages/cran.scm (r-arm): Update to 1.11-2.
[propagated-inputs]: Add r-hmisc.

3 years agognu: r-remotes: Update to 2.2.0.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:34 +0000 (11:57 +0200)]
gnu: r-remotes: Update to 2.2.0.

* gnu/packages/cran.scm (r-remotes): Update to 2.2.0.
[native-inputs]: Add r-knitr.

3 years agognu: r-fs: Update to 1.5.0.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:29 +0000 (11:57 +0200)]
gnu: r-fs: Update to 1.5.0.

* gnu/packages/cran.scm (r-fs): Update to 1.5.0.
[native-inputs]: Remove pkg-config.

3 years agognu: r-effectsize: Update to 0.3.2.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:25 +0000 (11:57 +0200)]
gnu: r-effectsize: Update to 0.3.2.

* gnu/packages/cran.scm (r-effectsize): Update to 0.3.2.

3 years agognu: r-ggeffects: Update to 0.15.1.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:22 +0000 (11:57 +0200)]
gnu: r-ggeffects: Update to 0.15.1.

* gnu/packages/cran.scm (r-ggeffects): Update to 0.15.1.

3 years agognu: r-performance: Update to 0.4.8.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:19 +0000 (11:57 +0200)]
gnu: r-performance: Update to 0.4.8.

* gnu/packages/cran.scm (r-performance): Update to 0.4.8.

3 years agognu: r-bayestestr: Update to 0.7.2.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:16 +0000 (11:57 +0200)]
gnu: r-bayestestr: Update to 0.7.2.

* gnu/packages/cran.scm (r-bayestestr): Update to 0.7.2.

3 years agognu: r-tmb: Update to 1.7.18.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:13 +0000 (11:57 +0200)]
gnu: r-tmb: Update to 1.7.18.

* gnu/packages/cran.scm (r-tmb): Update to 1.7.18.

3 years agognu: r-parmigene: Update to 1.1.0.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:09 +0000 (11:57 +0200)]
gnu: r-parmigene: Update to 1.1.0.

* gnu/packages/cran.scm (r-parmigene): Update to 1.1.0.

3 years agognu: r-raster: Update to 3.3-13.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:06 +0000 (11:57 +0200)]
gnu: r-raster: Update to 3.3-13.

* gnu/packages/cran.scm (r-raster): Update to 3.3-13.

3 years agognu: r-insight: Update to 0.9.0.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:03 +0000 (11:57 +0200)]
gnu: r-insight: Update to 0.9.0.

* gnu/packages/cran.scm (r-insight): Update to 0.9.0.

3 years agognu: r-zip: Update to 2.1.0.
Ricardo Wurmus [Wed, 12 Aug 2020 09:57:00 +0000 (11:57 +0200)]
gnu: r-zip: Update to 2.1.0.

* gnu/packages/cran.scm (r-zip): Update to 2.1.0.

3 years agognu: r-radiant-data: Update to 1.3.10.
Ricardo Wurmus [Wed, 12 Aug 2020 09:56:57 +0000 (11:56 +0200)]
gnu: r-radiant-data: Update to 1.3.10.

* gnu/packages/cran.scm (r-radiant-data): Update to 1.3.10.

3 years agognu: r-expm: Update to 0.999-5.
Ricardo Wurmus [Wed, 12 Aug 2020 09:56:53 +0000 (11:56 +0200)]
gnu: r-expm: Update to 0.999-5.

* gnu/packages/cran.scm (r-expm): Update to 0.999-5.

3 years agognu: r-ttr: Update to 0.24.0.
Ricardo Wurmus [Wed, 12 Aug 2020 09:56:50 +0000 (11:56 +0200)]
gnu: r-ttr: Update to 0.24.0.

* gnu/packages/cran.scm (r-ttr): Update to 0.24.0.

3 years agognu: r-tinytex: Update to 0.25.
Ricardo Wurmus [Wed, 12 Aug 2020 09:56:47 +0000 (11:56 +0200)]
gnu: r-tinytex: Update to 0.25.

* gnu/packages/cran.scm (r-tinytex): Update to 0.25.

3 years agognu: r-vctrs: Update to 0.3.2.
Ricardo Wurmus [Wed, 12 Aug 2020 09:56:44 +0000 (11:56 +0200)]
gnu: r-vctrs: Update to 0.3.2.

* gnu/packages/cran.scm (r-vctrs): Update to 0.3.2.

3 years agognu: r-xfun: Update to 0.16.
Ricardo Wurmus [Wed, 12 Aug 2020 09:56:41 +0000 (11:56 +0200)]
gnu: r-xfun: Update to 0.16.

* gnu/packages/cran.scm (r-xfun): Update to 0.16.

3 years agognu: r-mice: Update to 3.11.0.
Ricardo Wurmus [Wed, 12 Aug 2020 09:56:38 +0000 (11:56 +0200)]
gnu: r-mice: Update to 3.11.0.

* gnu/packages/cran.scm (r-mice): Update to 3.11.0.

3 years agognu: r-stringdist: Update to 0.9.6.
Ricardo Wurmus [Wed, 12 Aug 2020 09:56:34 +0000 (11:56 +0200)]
gnu: r-stringdist: Update to 0.9.6.

* gnu/packages/cran.scm (r-stringdist): Update to 0.9.6.

3 years agognu: r-psych: Update to 2.0.7.
Ricardo Wurmus [Wed, 12 Aug 2020 09:56:31 +0000 (11:56 +0200)]
gnu: r-psych: Update to 2.0.7.

* gnu/packages/cran.scm (r-psych): Update to 2.0.7.