gnu: Add chatty.

* gnu/packages/messaging.scm (chatty): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: Add purple-mm-sms.

* gnu/packages/messaging.scm (purple-mm-sms): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: Add feedbackd.

* gnu/packages/gnome.scm (feedbackd): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: poetry: Update to 1.0.9.

* gnu/packages/python-xyz.scm (poetry): Update to 1.0.9.
[arguments] Adjust required versions of pyrsistent. Remove required
version of importlib-metadata.
[propagated-inputs] Add python-msgpack-transitional.
Remove python-importlib-metadata.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: python-memcached: Add patch to fix syntax warnings.

* gnu/packages/patches/python-memcached-syntax-warnings.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-memcached)[source]: Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: guile-chickadee: Supress guile warnings.

* gnu/packages/game-development.scm (guile-chickadee)[arguments]: Add
make-flag to not autocompile guile files.

gnu: guile-sdl2: Remove unused configure-flags.

* gnu/packages/sdl.scm (guile-sdl2)[arguments]: Remove configure-flags.

gnu: guile-chickadee: Update to 0.5.0.

* gnu/packages/game-development.scm (guile-chickadee): Update to 0.5.0.
[inputs]: Add libvorbis, mpg123, openal.
(guile3.0-chickadee)[inputs]: Same.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: guile-sdl2: Update to 0.5.0.

* gnu/packages/sdl.scm (guile-sdl2): Update to 0.5.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: emacs-deadgrep: Update to 0.10.

* gnu/packages/emacs-xyz.scm (emacs-deadgrep): Update to 0.10.
[inputs]: change into...
[propagated-inputs]: ... this.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: emacs-emms: Update to 5.42.

* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 5.42.
[source]: Use GNU ELPA repository.
[arguments]: Remove unnecessary phases.

gnu: crawl: Update to 0.25.0.

* gnu/packages/games.scm (crawl): Update to 0.25.0.

gnu: python-ipython: Use python-prompt-toolkit-2.

This prevents conflicting variants of python-prompt-toolkit from being
installed, which prevented jupyter from being installed.

* gnu/packages/python-xyz.scm (python-ipython)[propagated-inputs]: Replace
python-prompt-toolkit with python-prompt-toolkit-2.
(python-widgetsnbextension)[propagated-inputs]: Do not use
prompt-toolkit-2-instead-of-prompt-toolkit on python-ipykernel.
(python-ipywidgets)[propagated-inputs]: Do not use
prompt-toolkit-2-instead-of-prompt-toolkit on python-ipython.
(python-jupyter-console)[propagated-inputs]: Do not use
prompt-toolkit-2-instead-of-prompt-toolkit on python-ipykernel.
(prompt-toolkit-2-instead-of-prompt-toolkit): Remove variable.
* gnu/packages/machine-learning.scm (python-iml)[propagated-inputs]: Do not
use prompt-toolkit-2-instead-of-prompt-toolkit on python-ipython.

installer: final: Remove restart-service procedure.

* gnu/installer/final.scm (umount-cow-store): Remove "restart-service" that is
now provided by (gnu services herd).

gnu: libmateweather: Fix tests.

Apply the following upstream fix:
https://github.com/mate-desktop/libmateweather/commit/ea13e06563fb5fa53f8a9643156a64825e986acb.

* gnu/packages/mate.scm (libmateweather)[source]: Fix tests by renaming
America/Godthab timezone to America/Nuuk.

maint: "make authenticate" behaves like 'guix pull' by default.

* build-aux/git-authenticate.scm (%use-historical-authorizations?)
(%introductory-commit): New variables.
* build-aux/git-authenticate.scm (git-authenticate): Use pass the empty
list as #:default-authorizations when %USE-HISTORICAL-AUTHORIZATIONS? is
false.

time-machine: Add '--disable-authentication'.

* guix/inferior.scm (cached-channel-instance): Add #:authenticate? and
pass it to 'latest-channel-instances'.
* guix/scripts/time-machine.scm (show-help, %options): Add
'--disable-authentication'.
(%default-options): Add 'authenticate-channels?'.
(guix-time-machine): Honor it.

pull: Add '--disable-authentication'.

* guix/channels.scm (latest-channel-instance): Add #:authenticate? and
honor it.
(latest-channel-instances): Likewise.
* guix/scripts/pull.scm (%default-options): Add 'authenticate-channels?'.
(show-help, %options): Add '--disable-authentication'.
(guix-pull): Pass #:authenticate? to 'latest-channel-instances'.
* doc/guix.texi (Invoking guix pull): Document it.

channels: Automatically add introduction for the official 'guix' channel.

This is useful when people run "guix time-machine -C channels.scm",
where 'channels.scm' misses channel introductions.

* guix/channels.scm (%default-channel-url): New variable.
(%default-channels): Use it.
(ensure-default-introduction): New procedure.
(latest-channel-instance): Call it.

.guix-channel: Add 'keyring-reference'.

* .guix-channel: Add 'keyring-reference'.

channels: Make 'validate-pull' call right after clone/pull.

This should come before patching, authentication, etc.

* guix/channels.scm (latest-channel-instance): Add #:validate-pull
parameter and honor it.  Return a single value: the instance.
(ensure-forward-channel-update): Change 'instance' parameter to 'commit'
and adjust accordingly.
(latest-channel-instances): Adjust to 'latest-channel-instance' changes.
* guix/scripts/pull.scm (warn-about-backward-updates): Change 'instance'
parameter to 'commit' and adjust accordingly.
* tests/channels.scm ("latest-channel-instances #:validate-pull"):
Likewise.

channels: 'latest-channel-instance' authenticates Git checkouts.

Fixes <https://bugs.gnu.org/22883>.

* guix/channels.scm (<channel>)[introduction]: New field.
(<channel-introduction>): New record type.
(%guix-channel-introduction): New variable.
(%default-channels): Use it.
(<channel-metadata>)[keyring-reference]: New field.
(%default-keyring-reference): New variable.
(read-channel-metadata, read-channel-metadata-from-source): Initialize
the 'keyring-reference' field.
(commit-short-id, verify-introductory-commit)
(authenticate-channel): New procedures.
(latest-channel-instance): Call 'authenticate-channel' when CHANNEL has
an introduction.
* tests/channels.scm (gpg+git-available?, commit-id-string): New
procedures.
("authenticate-channel, wrong first commit signer"):
("authenticate-channel, .guix-authorizations"): New tests.
* doc/guix.texi (Invoking guix pull): Mention authentication.

tests: Move OpenPGP helpers to (guix tests gnupg).

* tests/git-authenticate.scm (key-id): Remove.
(%ed25519-public-key-file, %ed25519-secret-key-file)
(%ed25519bis-public-key-file, %ed25519bis-secret-key-file)
(read-openpgp-packet, key-fingerprint): Move to...
* guix/tests/gnupg.scm: ... here.

git-authenticate: 'authenticate-commits' takes a #:keyring parameter.

* guix/git-authenticate.scm (authenticate-commits): Add #:keyring
parameter.

git-authenticate: Cache takes a key parameter.

* guix/git-authenticate.scm (authenticated-commit-cache-file)
(cache-authenticated-commit, previously-authenticated-commits): Add
'key' parameter and honor it.
* build-aux/git-authenticate.scm (git-authenticate): Pass
"channels/guix" as the key.

doc: Recommend "make authenticate" after ./bootstrap.

* doc/contributing.texi (Building from Git): Move "make authenticate"
instructions below.

build-system: cmake: Add substitutable keyword.

* guix/build-system/cmake.scm (cmake-build, cmake-cross-build): Add
substitutable keyword.

gnu: nix: Look for configuration in /etc.

Fixes <http://issues.guix.gnu.org/41704>.

* gnu/packages/package-management.scm (nix)[arguments]: Add
‘--sysconfdir=/etc’ configure flag and override it during installation.

Requested-and-tested-by: Peng Mei Yu <pengmeiyu@riseup.net>

pack: Add zstd compressor.

* guix/scripts/pack.scm (%compressors): Add zstd.
* doc/guix.texi (Invoking guix pack): Document it.

gnu: emacs-god-mode: Update to 2.17.0.

* gnu/packages/emacs-xyz.scm (emacs-god-mode): Update to 2.17.0.

gnu: bsnes: Remove unnecessary inputs.

* gnu/packages/emulators.scm (bsnes)[inputs]: Remove gt+-2 and libx11.

gnu: Add rust-nom-5.

* gnu/packages/crates-io.scm (rust-nom-5): New variable.
(rust-nom-4.2): Inherit from rust-nom-5.

gnu: Add rust-lexical-core-0.7.

* gnu/packages/crates-io.scm (rust-lexical-core-0.7): New variable.
(rust-lexical-core-0.4): Inherit from rust-lexical-core-0.7.

gnu: Add rust-static-assertions-1.

* gnu/packages/crates-io.scm (rust-static-assertions-1): New variable.
(rust-static-assertions-0.3): Inherit from rust-static-assertions-1.

etc: Add committer script.

* etc/committer.scm.in: New file.
* configure.ac: Configure it.

gnu: Add bsnes.

* gnu/packages/emulators.scm (bsnes): New variable.

gnu: r-xgboost: Update to 1.1.1.1.

* gnu/packages/cran.scm (r-xgboost): Update to 1.1.1.1.

gnu: r-genenet: Update to 1.2.15.

* gnu/packages/cran.scm (r-genenet): Update to 1.2.15.

gnu: r-performance: Update to 0.4.7.

* gnu/packages/cran.scm (r-performance): Update to 0.4.7.

gnu: r-abn: Update to 2.2.1.

* gnu/packages/cran.scm (r-abn): Update to 2.2.1.
[propagated-inputs]: Add r-boot, r-brglm, r-entropy, and r-moments.

gnu: r-vioplot: Update to 0.3.5.

* gnu/packages/cran.scm (r-vioplot): Update to 0.3.5.
[native-inputs]: Add r-knitr.

gnu: r-circlize: Update to 0.4.10.

* gnu/packages/cran.scm (r-circlize): Update to 0.4.10.

gnu: Add r-entropy.

* gnu/packages/cran.scm (r-entropy): New variable.

gnu: Add r-brglm.

* gnu/packages/cran.scm (r-brglm): New variable.

gnu: Add r-profilemodel.

* gnu/packages/cran.scm (r-profilemodel): New variable.

gnu: emacs-yasnippet: Clean-up package definition.

An old snippet was causing the build to fail when using Emacs 27.

* gnu/packages/emacs-xyz.scm (emacs-yasnippet)[source]: Use git-file-name, and
remove obsolete snippet.
[phases]{home}: New phase.  This allows the rebindings test to pass.
{make-tests-writable, delete-rebinding-test}: Remove phases.
[description]: Re-indent.

gnu: volk: Improve description mark-up.

* gnu/packages/engineering.scm (volk)[description]: Substitute
@acronym for the less appropriate @code.

gnu: volk: Fix typo in description.

* gnu/packages/engineering.scm (volk)[description]: Fix typo.

gnu: inxi-minimal: Update to 3.1.03-1.

* gnu/packages/admin.scm (inxi-minimal): Update to 3.1.03-1.

gnu: tup: Update to 0.7.9.

* gnu/packages/build-tools.scm (tup): Update to 0.7.9.

doc: Clarify 'hurd-vm' and 'childhurd' names.

Suggested by Maxim Cournoyer via IRC.

* doc/guix.texi (The Hurd in a Virtual Machine): Explicitly mention that
hurd-vm and childhurd are two names for this service.

gnu: glade3: Enable tests.

* gnu/packages/gnome.scm (glade3)[arguments]: Enable tests. Add custom
pre-check phase.
[native-inputs]: Add hicolor-icon-theme and xorg-server-for-tests.

ui: Use package-description-string.

* guix/ui.scm (package->recutils): Use package-description-string instead of
package-description and P_.

ui: Do not translate package synopsis a second time.

* guix/ui.scm (package->recutils): package-synopsis-string already returns a
translated string. Do not attempt to translate it again.

ui: Cut off search early if any regexp does not match.

* guix/ui.scm (relevance): When one of the regexps does not match, cut off
early and return 0. Do not try to match the remaining regexps.

gnu: cuirass: Update to 0.0.1-32.3db603c.

* gnu/packages/ci.scm (cuirass): Update to 0.0.1-32.3db603c.

ci: Add build-products id field and export accessors.

* guix/ci.scm (build-product?, build-product-id,
build-product-type, build-product-file-size,
build-product-path): Export them,
[id]: new field.

ci: Add status option to "latest-builds".

* guix/ci.scm (latest-builds): Add "status" option.

download: Remove usa-mirror.go-parts.com mirror.

It incorrectly redirects 404s (at least) to the commercial home page.

* guix/download.scm (%mirrors): Remove usa-mirror.go-parts.com URLs.

gnu: volk: Make retained references non-native inputs.

* gnu/packages/engineering.scm (volk)[native-inputs]:
Move python-wrapper and python-mako…
[inputs]: …here.

gnu: volk: Update to 2.3.0.

* gnu/packages/engineering.scm (volk): Update to 2.3.0.

gnu: r-limma: Update to 3.44.3.

* gnu/packages/bioinformatics.scm (r-limma): Update to 3.44.3.

gnu: openmw: Update to 0.46.0.

* gnu/packages/game-development.scm (openmw): Update to 0.46.0.

gnu: quassel: Add context menu for d-bus tray icon.

* gnu/packages/irc.scm (quassel)[inputs]: Add libdbusmenu-qt.

gnu: quassel: Fix build with qt-5.14.

* gnu/packages/irc.scm (quassel)[source]: Add patch.
* gnu/packages/patches/quassel-qt-514-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

ci: Fix buildproducts reading.

This is a follow-up of 4e05bbb093a17145fcabd48ea1d2c9cd7559084d.

* guix/ci.scm (<build>)[products]: Test for vector type, as products can be
"null".

news: Add entry for script execution via "guix repl".

* etc/news.scm: Add entry.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

ci: Add job option to "latest-builds".

* guix/ci.scm (latest-builds): Add "job" option.

ci: Add build products support.

* guix/ci.scm (<build-product>): New json mapping,
(<build)[products]: new field.

gnu: emacs-debbugs: Update to 0.24.

* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.24.

gnu: Add emacs-flycheck-guile.

 * gnu/packages/emacs-xyz.scm (emacs-flycheck-guile): New variable.

gnu: inkscape: Add the glib-or-gtk-build-system phases.

This fixes an issue where an improperly set XDG_DATA_DIRS environment variable
would cause a segfault when opening the 'Save As' menu of Inkscape.  See:
<https://lists.gnu.org/archive/html/help-guix/2020-06/msg00093.html>.

* gnu/packages/inkscape.scm (inkscape-1.0)[arguments]: Import the
(guix build glib-or-gtk-build-system) module.
[phases]: Add the glib-or-gtk-compile-schemas and glib-or-gtk-wrap phases.

Reported-by: Thorsten Wilms <t_w_@freenet.de>

gnu: emacs-org-reveal: Update to 20200607.

* gnu/packages/emacs-xyz.scm (emacs-org-reveal): Update to 20200607.

gnu: Add tup.

* gnu/packages/build-tools.scm (tup): New variable.
* gnu/packages/patches/tup-unbundle-dependencies.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register new file.

gnu: Add iputils.

* gnu/packages/patches/iputils-libcap-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/networking.scm (iputils): New public variable.

gnu: docbook: Add 5.0.1.

* gnu/packages/docbook.scm (docbook-xml-5): New public variable.
(docbook-xml): Inherit from it.  While at it, remove trailing whitespace.

gnu: Add ndisc6.

* gnu/packages/networking.scm (ndisc6): New public variable.

gnu: Add ghc-psqueue.

* gnu/packages/haskell-xyz.scm (ghc-psqueue): New public variable.

gnu: Add shelltestrunner.

* gnu/packages/haskell-apps.scm (shelltestrunner): New public variable.

gnu: Add ghc-regex-pcre.

* gnu/packages/haskell-xyz.scm (ghc-regex-pcre): New public variable.

gnu: Add ghc-curl.

* gnu/packages/haskell-web.scm (ghc-curl): New public variable.

doc: Adjust branching and rebuilding strategy to match reality.

The amount of packages has more than tripled since this section was written.
Adjust the rebuild limits and cycle lengths based on current practices.

* doc/contributing.texi (Submitting Patches): Increase 'staging' rebuild limit
to 1800 packages, and adjust the cycle to six weeks.  Increase 'core-updates'
cycle to six months.

gnu: Add go-github-com-mattn-go-pointer.

* gnu/packages/golang.scm (go-github-com-mattn-go-pointer): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: Add go-golang-org-x-oauth2.

* gnu/packages/golang.scm (go-golang-org-x-oauth2): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: emacs-erc-status-sidebar: Placate 'guix lint'.

* gnu/packages/emacs-xyz.scm (emacs-erc-status-sidebar)[source]: Add
'file-name'.
[synopsis, description]: Adjust.

gnu: Add emacs-erc-status-sidebar.

* gnu/packages/emacs-xyz.scm (emacs-erc-status-sidebar): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

guix repl: Add script execution.

* guix/scripts/repl.scm: Add filename options for script execution.
* doc/guix.texi (Invoking guix repl): Document it.
* tests/guix-repl.sh: Test it.
* Makefile.am: (SH_TESTS): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add augustus.

* gnu/packages/games.scm (augustus): New variable.

gnu: diffoscope: Update to 147.

* gnu/packages/diffoscope (diffoscope): Update to 147.

services: Add 'hurd-vm service-type'.

* gnu/services/virtualization.scm (hurd-vm-shepherd-service,
hurd-vm-disk-image): New procedures.
(%hurd-vm-operating-system, hurd-vm-service-type): New variables.
(<hurd-vm-configuration>): New record type.
* doc/guix.texi (Virtualization Services): Document it.
* gnu/services/shepherd.scm (scm->go): Use let-system, remove FIXME.  Fixes
fixes cross-building of shepherd modules for the Hurd image.

system: image: Make sure target is set.

* gnu/system/image.scm (system-image): Move "with-parameters" call so that it
encapsulates "operating-system-bootcfg".

system: image: Remove left-over.

* gnu/system/image.scm: Remove a left-over since maybe-with-target procedure
was removed.

scripts: system: Fix "init" command.

This is a follow-up of 7ca533c7237622d70b423033c4506217d9ce4014. The
introduced "target" variable is shadowing the target argument.

* guix/scripts/system.scm (perform-action): Rename "target" variable to
"target*".

installer: final: Make sure 'bold' font files are loaded.

* gnu/installer/newt/final.scm (run-install-shell): Force kmscon to open
'bold' font files, before the cow-store overlay is mounted.

gnu: qtox: Don't use unstable tarball.

* gnu/packages/messaging.scm (tox)[source]: Don't use autogenerated
tarball.

gnu: qtox: Update to 1.17.2.

* gnu/packages/messaging.scm (qtox): Update to 1.17.2.
[arguments]: Add phase to disable network tests.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: c-toxcore: Update to 0.2.12.

*  gnu/packages/messaging.scm (c-toxcore): Update to 0.2.12.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: pagekite: Update to 1.5.2.200603.

* gnu/packages/networking.scm (pagekite): Update to 1.5.2.200603.

gnu: python-socksipychain: Update to 2.1.2.

* gnu/packages/python-xyz.scm (python-socksipychain): Update to 2.1.2.

lint: Add 'check-for-collisions' checker.

Suggested by Edouard Klein <edk@beaver-labs.com>.

* guix/profiles.scm (check-for-collisions): Export.
* guix/lint.scm (check-profile-collisions): New procedure.
(%local-checkers): Add 'profile-collisions' checker.
* tests/lint.scm ("profile-collisions: no warnings")
("profile-collisions: propagated inputs collide")
("profile-collisions: propagated inputs collide, store items"): New tests.
* doc/guix.texi (Invoking guix lint): Document it.