Ludovic Courtès [Tue, 21 Apr 2015 19:07:11 +0000 (21:07 +0200)]
gnu: Rename ld-wrapper2 to ld-wrapper.
* gnu/packages/ld-wrapper2.in: Rename to...
* gnu/packages/ld-wrapper.in: ... this.
* gnu-system.am (MISC_DISTRO_FILES): Remove ld-wrapper2.in.
* gnu/packages/commencement.scm (fixed-ld-wrapper): Remove.
(gcc-toolchain): Restore pre-
77db91ad inputs.
Ludovic Courtès [Mon, 20 Apr 2015 20:37:20 +0000 (22:37 +0200)]
ui: Add 'symlink' replacement with better error reporting.
* guix/ui.scm (symlink): New procedure.
Ludovic Courtès [Mon, 20 Apr 2015 20:21:51 +0000 (22:21 +0200)]
system: Make /gnu/store a read-only bind mount by default.
* gnu/system/file-systems.scm (%immutable-store): New variable.
(%base-file-systems): Add it.
* doc/guix.texi (File Systems): Document it.
Ludovic Courtès [Mon, 20 Apr 2015 20:16:13 +0000 (22:16 +0200)]
file-systems: Use a second 'mount' call for read-only bind mounts.
* gnu/build/file-systems.scm (MS_REMOUNT): New constant.
(mount-file-system): Add 'flags' local variable. When FLAGS has
MS_BIND & MS_RDONLY, call 'mount' with MS_REMOUNT.
* gnu/services/base.scm (file-system-service) <start>: Likewise.
Ludovic Courtès [Mon, 20 Apr 2015 13:50:59 +0000 (15:50 +0200)]
gnu: Remove all #:select from (gnu packages ...) modules.
This works around Guile bug <http://bugs.gnu.org/15540>.
Reported by Andreas Enge <andreas@enge.fr>.
* gnu/packages/engineering.scm: Don't #:select from (gnu packages ...).
* gnu/packages/gcc.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/pulseaudio.scm: Likewise.
* gnu/packages/moe.scm: Likewise, and #:select from (guix licenses)
instead.
Ludovic Courtès [Mon, 30 Mar 2015 20:59:24 +0000 (22:59 +0200)]
gexp: Add printers for <gexp-input> and <gexp-output>.
* guix/gexp.scm (write-gexp-input, write-gexp-output): New procedures.
(<gexp-input>, <gexp-output>): Use them as printers.
Ludovic Courtès [Mon, 20 Apr 2015 08:20:17 +0000 (10:20 +0200)]
profiles: Create a CA certificate bundle only when it would be non-empty.
* guix/profiles.scm (ca-certificate-bundle): Create
$output/etc/ssl/certs if and only if CA-FILES is non-empty.
Ricardo Wurmus [Tue, 14 Apr 2015 12:43:32 +0000 (14:43 +0200)]
gnu: Add sra-tools.
* gnu/packages/bioinformatics.scm (sra-tools): New variable.
Ricardo Wurmus [Tue, 14 Apr 2015 12:42:49 +0000 (14:42 +0200)]
gnu: Add NCBI VDB.
* gnu/packages/bioinformatics.scm (ncbi-vdb): New variable.
Ricardo Wurmus [Tue, 14 Apr 2015 12:24:01 +0000 (14:24 +0200)]
gnu: Add NGS Java bindings.
* gnu/packages/bioinformatics.scm (ngs-java): New variable.
Ricardo Wurmus [Tue, 14 Apr 2015 12:23:19 +0000 (14:23 +0200)]
gnu: Add NGS SDK.
* gnu/packages/bioinformatics.scm (ngs-sdk): New variable.
Ricardo Wurmus [Wed, 15 Apr 2015 15:46:35 +0000 (17:46 +0200)]
gnu: Add Biopython.
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New
variables.
Eric Bavier [Mon, 20 Apr 2015 02:37:28 +0000 (21:37 -0500)]
gnu: Adjust latest perl modules to new 'modify-phases' syntax.
* gnu/packages/compression.scm (perl-compress-raw-zlib)[arguments]:
Add missing quotes, as needed since commit
f8503e2.
* gnu/packages/perl.scm (perl-ipc-run)[arguments]: Likewise.
* gnu/packages/xml.scm (perl-xml-sax)[arguments]: Likewise.
宋文武 [Sun, 19 Apr 2015 09:58:49 +0000 (17:58 +0800)]
gnu: Add WebKitGTK+.
* gnu/packages/webkit.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
Eric Bavier [Sun, 19 Apr 2015 14:38:45 +0000 (09:38 -0500)]
gnu: Add JSON-Any.
* gnu/packages/perl.scm (perl-json-any): New variable.
Eric Bavier [Sun, 19 Apr 2015 14:37:35 +0000 (09:37 -0500)]
import: cpan: Fix license string for Artistic license.
* guix/import/cpan.scm (string->license): Remove extraneous "_0"
suffix for Artistics licenses.
Eric Bavier [Wed, 15 Apr 2015 22:12:09 +0000 (17:12 -0500)]
gnu: nix: Propagate perl inputs.
* gnu/packages/package-management.scm (nix)[inputs]: Move
perl-www-curl, perl-dbi, perl-dbd-sqlite to...
[propagated-inputs]: ...this new field
Eric Bavier [Wed, 8 Apr 2015 21:13:45 +0000 (16:13 -0500)]
gnu: Add Sys-Hostname-Long.
* gnu/packages/perl.scm (perl-sys-hostname-long): New variable.
Eric Bavier [Wed, 8 Apr 2015 21:09:23 +0000 (16:09 -0500)]
gnu: Add Text-Table.
* gnu/packages/perl.scm (perl-text-table): New variable.
Eric Bavier [Wed, 8 Apr 2015 21:09:00 +0000 (16:09 -0500)]
gnu: Add Text-Aligner.
* gnu/packages/perl.scm (perl-text-aligner): New variable.
Eric Bavier [Wed, 8 Apr 2015 21:07:27 +0000 (16:07 -0500)]
gnu: Add Set-Scalar.
* gnu/packages/perl.scm (perl-set-scalar): New variable.
Eric Bavier [Tue, 7 Apr 2015 22:17:13 +0000 (17:17 -0500)]
gnu: Add SQL-SplitStatement.
* gnu/packages/databases.scm (perl-sql-splitstatement): New variable.
Eric Bavier [Tue, 7 Apr 2015 22:16:16 +0000 (17:16 -0500)]
gnu: Add SQL-Tokenizer.
* gnu/packages/databases.scm (perl-sql-tokenizer): New variable.
Eric Bavier [Tue, 7 Apr 2015 22:12:16 +0000 (17:12 -0500)]
gnu: Add Perl Readonly.
* gnu/packages/perl.scm (perl-readonly): New variable.
Eric Bavier [Tue, 7 Apr 2015 22:03:04 +0000 (17:03 -0500)]
gnu: Add Perl Net-Amazon-S3.
* gnu/packages/patches/perl-net-amazon-s3-moose-warning.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-net-amazon-s3): New variable.
Eric Bavier [Tue, 7 Apr 2015 22:00:13 +0000 (17:00 -0500)]
gnu: Add XML-LibXML.
* gnu/packages/xml.scm (perl-xml-libxml): New variable.
Eric Bavier [Tue, 7 Apr 2015 21:54:44 +0000 (16:54 -0500)]
gnu: Add XML-SAX;
* gnu/packages/xml.scm (perl-xml-sax): New variable.
Eric Bavier [Tue, 7 Apr 2015 21:44:31 +0000 (16:44 -0500)]
gnu: Add XML-SAX-Base.
* gnu/packages/xml.scm (perl-xml-sax-base): New variable.
Eric Bavier [Tue, 7 Apr 2015 21:38:15 +0000 (16:38 -0500)]
gnu: Add XML-NamespaceSupport.
* gnu/packages/xml.scm (perl-xml-namespacesupport): New variable.
Eric Bavier [Tue, 7 Apr 2015 20:56:51 +0000 (15:56 -0500)]
gnu: Add Term-ProgressBar-Simple.
* gnu/packages/perl.scm (perl-term-progressbar-simple): New variable.
Eric Bavier [Tue, 7 Apr 2015 20:52:22 +0000 (15:52 -0500)]
gnu: Add Term-ProgressBar-Quiet.
* gnu/packages/perl.scm (perl-term-progressbar-quiet): New variable.
Eric Bavier [Tue, 7 Apr 2015 20:49:44 +0000 (15:49 -0500)]
gnu: Add Test-MockObject.
* gnu/packages/perl.scm (perl-test-mockobject): New variable.
Eric Bavier [Tue, 7 Apr 2015 20:47:32 +0000 (15:47 -0500)]
gnu: Add UNIVERSAL-isa.
* gnu/packages/perl.scm (perl-universal-isa): New variable.
Eric Bavier [Tue, 7 Apr 2015 20:47:05 +0000 (15:47 -0500)]
gnu: Add UNIVERSAL-can.
* gnu/packages/perl.scm (perl-universal-can): New variable.
Eric Bavier [Tue, 7 Apr 2015 20:30:50 +0000 (15:30 -0500)]
gnu: Add Term-ProgressBar.
* gnu/packages/perl.scm (perl-term-progressbar): New variable.
Eric Bavier [Tue, 7 Apr 2015 20:30:18 +0000 (15:30 -0500)]
gnu: Add TermReadKey.
* gnu/packages/perl.scm (perl-term-readkey): New variable.
Eric Bavier [Tue, 7 Apr 2015 20:29:43 +0000 (15:29 -0500)]
gnu: Add Class-MethodMaker.
* gnu/packages/perl.scm (perl-class-methodmaker): New variable.
Eric Bavier [Tue, 7 Apr 2015 20:28:58 +0000 (15:28 -0500)]
gnu: Add IO-Interactive.
* gnu/packages/perl.scm (perl-io-interactive): New variable.
Eric Bavier [Tue, 7 Apr 2015 05:07:17 +0000 (00:07 -0500)]
gnu: Add Term-Encoding.
* gnu/packages/perl.scm (perl-term-encoding): New variable.
Eric Bavier [Tue, 7 Apr 2015 04:54:20 +0000 (23:54 -0500)]
gnu: Add MooseX-Types-DateTime-MoreCoercions.
* gnu/packages/perl.scm (perl-moosex-types-datetime-morecoercions):
New variable.
Eric Bavier [Tue, 7 Apr 2015 04:52:52 +0000 (23:52 -0500)]
gnu: Add Time-Duration-Parse.
* gnu/packages/perl.scm (perl-time-duration-parse): New variable.
Eric Bavier [Tue, 7 Apr 2015 04:52:05 +0000 (23:52 -0500)]
gnu: Add Time-Duration.
* gnu/packages/perl.scm (perl-time-duration): New variable.
Eric Bavier [Tue, 7 Apr 2015 04:49:52 +0000 (23:49 -0500)]
gnu: Add Test-Pod-Coverage.
* gnu/packages/perl.scm (perl-test-pod-coverage): New variable.
Eric Bavier [Tue, 7 Apr 2015 04:48:54 +0000 (23:48 -0500)]
gnu: Add Pod-Coverage.
* gnu/packages/perl.scm (perl-pod-coverage): New variable.
Eric Bavier [Tue, 7 Apr 2015 04:47:53 +0000 (23:47 -0500)]
gnu: Add Devel-Symdump.
* gnu/packages/perl.scm (perl-devel-symdump): New variable.
Eric Bavier [Tue, 7 Apr 2015 04:34:39 +0000 (23:34 -0500)]
gnu: Add MooseX-Types-DateTime.
* gnu/packages/perl.scm (perl-moosex-types-datetime): New variable.
Eric Bavier [Tue, 7 Apr 2015 04:33:09 +0000 (23:33 -0500)]
gnu: Add DateTimeX-Easy.
* gnu/packages/perl.scm (perl-datetimex-easy): New variable.
Eric Bavier [Tue, 7 Apr 2015 04:30:48 +0000 (23:30 -0500)]
gnu: Add DateTime-Format-Natural.
* gnu/packages/perl.scm (perl-datetime-format-natural): New variable.
Eric Bavier [Tue, 7 Apr 2015 04:30:00 +0000 (23:30 -0500)]
gnu: Add Module-Util.
* gnu/packages/perl.scm (perl-module-util): New variable.
Eric Bavier [Tue, 7 Apr 2015 04:29:03 +0000 (23:29 -0500)]
gnu: Add Date-Calc.
* gnu/packages/perl.scm (perl-date-calc, perl-date-calc-xs): New
variables.
Eric Bavier [Tue, 7 Apr 2015 04:16:23 +0000 (23:16 -0500)]
gnu: Add Bit-Vector.
* gnu/packages/perl.scm (perl-bit-vector): New variable.
Eric Bavier [Tue, 7 Apr 2015 03:58:33 +0000 (22:58 -0500)]
gnu: Add Perl boolean.
* gnu/packages/perl.scm (perl-boolean): New variable.
Eric Bavier [Tue, 7 Apr 2015 03:49:26 +0000 (22:49 -0500)]
gnu: Add DateTime-Format-ICal.
* gnu/packages/perl.scm (perl-datetime-format-ical): New variable.
Eric Bavier [Tue, 7 Apr 2015 03:47:53 +0000 (22:47 -0500)]
gnu: Add DateTime-Event-ICal.
* gnu/packages/perl.scm (perl-datetime-event-ical): New variable.
Eric Bavier [Tue, 7 Apr 2015 03:46:46 +0000 (22:46 -0500)]
gnu: Add DateTime-Event-Recurrence.
* gnu/packages/perl.scm (perl-datetime-event-recurrence): New
variable.
Eric Bavier [Tue, 7 Apr 2015 03:45:14 +0000 (22:45 -0500)]
gnu: Add DateTime-Set.
* gnu/packages/perl.scm (perl-datetime-set): New variable.
Eric Bavier [Tue, 7 Apr 2015 03:43:39 +0000 (22:43 -0500)]
gnu: Add Set-Infinite.
* gnu/packages/perl.scm (perl-set-infinite): New variable.
Eric Bavier [Mon, 6 Apr 2015 22:45:45 +0000 (17:45 -0500)]
gnu: Add DateTime-Format-Flexible.
* gnu/packages/perl.scm (perl-datetime-format-flexible): New variable.
Eric Bavier [Mon, 6 Apr 2015 22:43:25 +0000 (17:43 -0500)]
gnu: Add DateTime-Format-Builder.
* gnu/packages/perl.scm (perl-datetime-format-builder): New variable.
Eric Bavier [Mon, 6 Apr 2015 22:37:23 +0000 (17:37 -0500)]
gnu: Add DateTime-Format-Strptime.
* gnu/packages/perl.scm (perl-datetime-format-strptime): New variable.
Eric Bavier [Mon, 6 Apr 2015 22:33:27 +0000 (17:33 -0500)]
gnu: Add Class-Factory-Util.
* gnu/packages/perl.scm (perl-class-factory-util): New variable.
Eric Bavier [Mon, 6 Apr 2015 22:14:14 +0000 (17:14 -0500)]
gnu: Add MooseX-StrictConstructor.
* gnu/packages/perl.scm (perl-moosex-strictconstructor): New variable.
Eric Bavier [Mon, 6 Apr 2015 22:03:46 +0000 (17:03 -0500)]
gnu: Add LWP-UserAgent-Determined.
* gnu/packages/web.scm (perl-lwp-useragent-determined): New variable.
Eric Bavier [Mon, 6 Apr 2015 21:58:22 +0000 (16:58 -0500)]
gnu: Add Digest-MD5-File.
* gnu/packages/web.scm (perl-digest-md5-file): New variable.
Eric Bavier [Mon, 6 Apr 2015 21:52:48 +0000 (16:52 -0500)]
gnu: Add Digest-HMAC.
* gnu/packages/perl.scm (perl-digest-hmac): New variable.
Eric Bavier [Mon, 6 Apr 2015 21:47:54 +0000 (16:47 -0500)]
gnu: Add DateTime-Format-HTTP.
* gnu/packages/web.scm (perl-datetime-format-http): New variable.
Eric Bavier [Mon, 6 Apr 2015 21:43:41 +0000 (16:43 -0500)]
gnu: Add Data-Stream-Bulk.
* gnu/packages/perl.scm (perl-data-stream-bulk): New variable.
Eric Bavier [Mon, 6 Apr 2015 20:45:10 +0000 (15:45 -0500)]
gnu: Add LWP-Protocol-https.
* gnu/packages/web.scm (perl-lwp-protocol-https): New variable.
Eric Bavier [Mon, 6 Apr 2015 20:44:32 +0000 (15:44 -0500)]
gnu: libwww-perl: Update to 6.13.
* gnu/packages/web.scm (perl-libwww)[version]: Update to 6.13.
[source]: Adjust uri.
[home-page]: Point to generic distribution page.
Eric Bavier [Mon, 6 Apr 2015 20:43:25 +0000 (15:43 -0500)]
gnu: Net-HTTP: Update to 6.07.
* gnu/packages/web.scm (perl-net-http)[version]: Update to 6.07.
[source]: Adjust uri.
[propagated-inputs]: New field.
[home-page]: Point to generic distribution page.
Eric Bavier [Mon, 6 Apr 2015 20:05:41 +0000 (15:05 -0500)]
gnu: Add IPC-Run.
* gnu/packages/perl.scm (perl-ipc-run): New variable.
Eric Bavier [Mon, 6 Apr 2015 19:52:01 +0000 (14:52 -0500)]
gnu: Add IO-Compress.
* gnu/packages/compression.scm (perl-io-compress): New variable.
Eric Bavier [Mon, 6 Apr 2015 19:50:44 +0000 (14:50 -0500)]
gnu: Add Compress-Raw-Zlib.
* gnu/packages/compression.scm (perl-compress-raw-zlib): New variable.
Eric Bavier [Mon, 6 Apr 2015 19:46:38 +0000 (14:46 -0500)]
gnu: Add Compress-Raw-Bzip2.
* gnu/packages/compression.scm (perl-compress-raw-bzip2): New
variable.
Eric Bavier [Mon, 6 Apr 2015 17:28:57 +0000 (12:28 -0500)]
gnu: Add File-Slurp.
* gnu/packages/perl.scm (perl-file-slurp): New variable.
Eric Bavier [Mon, 6 Apr 2015 17:24:21 +0000 (12:24 -0500)]
gnu: Add Email-Sender.
* gnu/packages/mail.scm (perl-email-sender): New variable.
Eric Bavier [Mon, 6 Apr 2015 17:23:37 +0000 (12:23 -0500)]
gnu: Add Throwable.
* gnu/packages/perl.scm (perl-throwable): New variable.
Eric Bavier [Mon, 6 Apr 2015 17:23:04 +0000 (12:23 -0500)]
gnu: Add MooX-Types-MooseLike.
* gnu/packages/perl.scm (perl-moox-types-mooselike): New variable.
Eric Bavier [Mon, 6 Apr 2015 17:22:20 +0000 (12:22 -0500)]
gnu: Add Email-Abstract.
* gnu/packages/mail.scm (perl-email-abstract): New variable.
Eric Bavier [Mon, 6 Apr 2015 17:06:45 +0000 (12:06 -0500)]
gnu: Add Email-MIME.
* gnu/packages/mail.scm (perl-email-mime): New variable.
Eric Bavier [Mon, 6 Apr 2015 17:06:23 +0000 (12:06 -0500)]
gnu: Add Email-Simple.
* gnu/packages/mail.scm (perl-email-simple): New variable.
Eric Bavier [Mon, 6 Apr 2015 17:05:32 +0000 (12:05 -0500)]
gnu: Add Email-Date-Format.
* gnu/packages/mail.scm (perl-email-date-format): New variable.
Eric Bavier [Mon, 6 Apr 2015 17:04:57 +0000 (12:04 -0500)]
gnu: Add Email-MIME-Encodings.
* gnu/packages/mail.scm (perl-email-mime-encodings): New variable.
Eric Bavier [Mon, 6 Apr 2015 17:04:24 +0000 (12:04 -0500)]
gnu: Add Email-MIME-ContentType.
* gnu/packages/mail.scm (perl-email-mime-contenttype): New variable.
Eric Bavier [Mon, 6 Apr 2015 17:03:55 +0000 (12:03 -0500)]
gnu: Add Email-MessageID.
* gnu/packages/mail.scm (perl-email-messageid): New variable.
Eric Bavier [Mon, 6 Apr 2015 17:03:11 +0000 (12:03 -0500)]
gnu: Add Email-Address.
* gnu/packages/mail.scm (perl-email-address): New variable.
Eric Bavier [Mon, 6 Apr 2015 16:34:17 +0000 (11:34 -0500)]
gnu: Move perl-mime-types to (gnu packages perl).
* gnu/packages/web.scm (perl-mime-types): Move this...
* gnu/packages/perl.scm (perl-mime-types): ... to here.
Eric Bavier [Mon, 6 Apr 2015 16:25:23 +0000 (11:25 -0500)]
gnu: add DBD-Pg.
* gnu/packages/databases.scm (perl-dbd-pg): New variable.
Eric Bavier [Sun, 5 Apr 2015 04:32:29 +0000 (23:32 -0500)]
gnu: Add Crypt-RandPasswd.
* gnu/packages/perl.scm (perl-crypt-randpasswd): New variable.
Eric Bavier [Sun, 5 Apr 2015 02:46:30 +0000 (21:46 -0500)]
gnu: Add CatalystX-Script-Server-Starman.
* gnu/packages/web.scm (perl-catalystx-script-server-starman): New
variable.
Eric Bavier [Sun, 5 Apr 2015 02:42:37 +0000 (21:42 -0500)]
gnu: Add Starman.
* gnu/packages/web.scm (starman): New variable.
Eric Bavier [Sun, 5 Apr 2015 02:40:52 +0000 (21:40 -0500)]
gnu: Add Net-Server.
* gnu/packages/web.scm (perl-net-server): New variable.
Eric Bavier [Sun, 5 Apr 2015 02:06:02 +0000 (21:06 -0500)]
gnu: Add HTTP-Parser-XS.
* gnu/packages/web.scm (perl-http-parser-xs): New variable.
Eric Bavier [Sun, 5 Apr 2015 01:56:32 +0000 (20:56 -0500)]
gnu: Add HTTP-Parser.
* gnu/packages/web.scm (perl-http-parser): New variable.
Eric Bavier [Sun, 5 Apr 2015 01:19:19 +0000 (20:19 -0500)]
gnu: Add Catalyst-View-TT.
* gnu/packages/web.scm (perl-catalyst-view-tt): New variable.
Eric Bavier [Sat, 4 Apr 2015 16:06:54 +0000 (11:06 -0500)]
gnu: Add Template-Timer.
* gnu/packages/perl.scm (perl-template-timer): New variable.
Ludovic Courtès [Sun, 19 Apr 2015 20:46:10 +0000 (22:46 +0200)]
gnu: bash-completion: Remove completions redundant with those of util-linux.
* gnu/packages/bash.scm (bash-completion)[arguments]: New field.
Ludovic Courtès [Sun, 19 Apr 2015 16:49:29 +0000 (18:49 +0200)]
guix package: Fix 'readlink*' implementation.
* guix/scripts/package.scm (readlink*): Fix to handle symlinks with
relative targets. Taken from ld-wrapper2.in.
Ludovic Courtès [Sun, 19 Apr 2015 15:24:37 +0000 (17:24 +0200)]
gnu: ld-wrapper2: Make 'readlink*' tail-recursive.
* gnu/packages/ld-wrapper2.in (readlink*): Make tail-recursive.
Ludovic Courtès [Sun, 19 Apr 2015 17:12:22 +0000 (19:12 +0200)]
guix package: -A and -s take supported systems into account.
* guix/scripts/package.scm (guix-package)[process-query]
<list-available>: Restrict results to packages matching
'supported-package?".
* guix/ui.scm (package->recutils): Print "systems:".
* tests/guix-package.sh: Add tests.
* doc/guix.texi (Invoking guix package): Adjust description of
'--list-available' accordingly.