Mathieu Othacehe [Mon, 24 Aug 2020 14:07:38 +0000 (16:07 +0200)]
gnu: guix: Update to 1.1.0-19.
0c50d72.
* gnu/packages/package-management.scm (guix): Update to 1.1.0-19.
0c50d72.
Mathieu Othacehe [Mon, 24 Aug 2020 13:02:29 +0000 (15:02 +0200)]
gnu: guile-lzlib: Fix cross-compilation.
* gnu/packages/guile.scm (guile-lzlib)[native-inputs]: Add "guile" when
cross-compiling.
Mathieu Othacehe [Mon, 24 Aug 2020 13:01:38 +0000 (15:01 +0200)]
gnu: guile-zlib: Fix cross-compilation.
* gnu/packages/guile.scm (guile-zlib)[native-inputs]: Add "guile" when
cross-compiling.
Mathieu Othacehe [Mon, 27 Jul 2020 14:36:39 +0000 (16:36 +0200)]
Use "guile-zlib" and "guile-lzlib" instead of (guix config).
* Makefile.am (MODULES): Remove guix/zlib.scm and guix/lzlib.scm,
(SCM_TESTS): remove tests/zlib.scm, tests/lzlib.scm.
* build-aux/build-self.scm (make-config.scm): Remove unused %libz variable.
* configure.ac: Remove LIBZ and LIBLZ variables and check instead for
Guile-zlib and Guile-lzlib.
* doc/guix.texi ("Requirements"): Remove zlib requirement and add Guile-zlib
and Guile-lzlib instead.
* gnu/packages/package-management.scm (guix)[native-inputs]: Add "guile-zlib"
and "guile-lzlib",
[inputs]: remove "zlib" and "lzlib",
[propagated-inputs]: ditto,
[arguments]: add "guile-zlib" and "guile-lzlib" to Guile load path.
* guix/config.scm.in (%libz, %liblz): Remove them.
* guix/lzlib.scm: Remove it.
* guix/man-db.scm: Use (zlib) instead of (guix zlib).
* guix/profiles.scm (manual-database): Do not stub (guix config) in imported
modules list, instead add "guile-zlib" to the extension list.
* guix/scripts/publish.scm: Use (zlib) instead of (guix zlib) and (lzlib)
instead of (guix lzlib),
(string->compression-type, effective-compression): do not check for zlib and
lzlib availability.
* guix/scripts/substitute.scm (%compression-methods): Do not check for lzlib
availability.
* guix/self.scm (specification->package): Add "guile-zlib" and "guile-lzlib"
and remove "zlib" and "lzlib",
(compiled-guix): remove "zlib" and "lzlib" arguments and add guile-zlib and
guile-lzlib to the dependencies, also do not pass "zlib" and "lzlib" to
"make-config.scm" procedure,
(make-config.scm): remove "zlib" and "lzlib" arguments as well as %libz and
%liblz variables.
* guix/utils.scm (lzip-port): Use (lzlib) instead of (guix lzlib) and do not
check for lzlib availability.
* guix/zlib.scm: Remove it.
* m4/guix.m4 (GUIX_LIBZ_LIBDIR, GUIX_LIBLZ_FILE_NAME): Remove them.
* tests/lzlib.scm: Use (zlib) instead of (guix zlib) and (lzlib)
instead of (guix lzlib), and do not check for zlib and lzlib availability.
* tests/publish.scm: Ditto.
* tests/substitute.scm: Do not check for lzlib availability.
* tests/utils.scm: Ditto.
* tests/zlib.scm: Remove it.
Tobias Geerinckx-Rice [Mon, 24 Aug 2020 11:26:06 +0000 (13:26 +0200)]
gnu: nano: Update to 5.2.
* gnu/packages/nano.scm (nano): Update to 5.2.
Vinicius Monego [Sat, 22 Aug 2020 16:10:37 +0000 (13:10 -0300)]
gnu: python-trytond-party: Update to 5.6.0.
* gnu/packages/tryton.scm (python-trytond-party): Update to 5.6.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
Vinicius Monego [Sat, 22 Aug 2020 16:10:36 +0000 (13:10 -0300)]
gnu: python-trytond-country: Update to 5.6.0.
* gnu/packages/tryton.scm (python-trytond-country): Update to 5.6.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
Vinicius Monego [Sat, 22 Aug 2020 16:10:35 +0000 (13:10 -0300)]
gnu: python-proteus: Update to 5.6.0.
* gnu/packages/tryton.scm (python-proteus): Update to 5.6.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
Vinicius Monego [Sat, 22 Aug 2020 16:10:34 +0000 (13:10 -0300)]
gnu: python-trytond: Update to 5.6.5.
* gnu/packages/tryton.scm (python-trytond): Update to 5.6.5.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
Vinicius Monego [Sat, 22 Aug 2020 16:07:41 +0000 (13:07 -0300)]
gnu: tryton: Update to 5.6.3.
* gnu/packages/tryton.scm (tryton): Update to 5.6.3.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
Michael Rohleder [Mon, 24 Aug 2020 00:18:38 +0000 (02:18 +0200)]
gnu: Add emacs-jq-mode.
* gnu/packages/emacs-xyz.scm (emacs-jq-mode): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Michael Rohleder [Sun, 23 Aug 2020 22:35:25 +0000 (00:35 +0200)]
gnu: Add ruby-kramdown-parser-gfm.
* gnu/packages/ruby.scm (ruby-kramdown-parser-gfm): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Mathieu Othacehe [Mon, 24 Aug 2020 09:51:26 +0000 (11:51 +0200)]
tests: Add a debug output to "fold-available-packages with/without cache".
This should help to debug test failures due to duplicated packages.
* tests/packages ("fold-available-packages with/without cache"): Print
duplicated packages.
Mathieu Othacehe [Mon, 24 Aug 2020 09:49:27 +0000 (11:49 +0200)]
gnu: Remove duplicated linux-libre-arm64-generic-5.8.
This fixes a test failure in "fold-available-packages with/without cache".
* gnu/packages/linux.scm (linux-libre-arm64-generic-5.8): Remove it as it
duplicates linux-libre-arm64-generic.
Efraim Flashner [Mon, 24 Aug 2020 09:03:12 +0000 (12:03 +0300)]
gnu: scroll: Fix build.
* gnu/packages/haskell-apps.scm (scroll)[arguments]: Add custom phase to
add a place-holder file to the static output.
Mathieu Othacehe [Thu, 6 Aug 2020 13:00:01 +0000 (15:00 +0200)]
Use guile-zlib extension in build-side code.
* Makefile.am (MODULES): Move guix/build/download-nar.scm to ...
(MODULES_NOT_COMPILED): ... here.
* guix/build/download-nar.scm: Use (zlib) instead of (guix zlib).
* guix/cvs-download.scm (cvs-fetch): Do not stub (guix config) in imported
modules list, instead add "guile-zlib" to the extension list.
* guix/git-download.scm (git-fetch): Ditto.
* guix/hg-download.scm (hg-fetch): Do not stub (guix config) in imported
modules list, instead add "guile-zlib" to the extension list.
Tobias Geerinckx-Rice [Mon, 24 Aug 2020 00:08:32 +0000 (02:08 +0200)]
gnu: dovecot: Enable FTS stemming.
* gnu/packages/mail.scm (dovecot)[inputs]: Add libstemmer.
Tobias Geerinckx-Rice [Sun, 23 Aug 2020 23:51:06 +0000 (01:51 +0200)]
gnu: python-parted: Update to 3.11.6.
* gnu/packages/disk.scm (python-parted): Update to 3.11.6.
(python2-parted): Drop unsupported Python 2 variant.
Tobias Geerinckx-Rice [Mon, 24 Aug 2020 02:31:29 +0000 (04:31 +0200)]
gnu: bind: Note that isc-dhcp bundles a BIND.
This follows up on commit
dad963a4393ea51409baa63817b26b449ed58338.
* gnu/packages/admin.scm (isc-bind): Comment.
Tobias Geerinckx-Rice [Mon, 24 Aug 2020 00:26:18 +0000 (02:26 +0200)]
gnu: xterm: Update to 359.
* gnu/packages/xorg.scm (xterm): Update to 359.
Tobias Geerinckx-Rice [Mon, 24 Aug 2020 00:03:17 +0000 (02:03 +0200)]
gnu: evisum: Update to 0.5.3.
* gnu/packages/enlightenment.scm (evisum): Update to 0.5.3.
Tobias Geerinckx-Rice [Mon, 24 Aug 2020 02:24:03 +0000 (04:24 +0200)]
gnu: xapian: Update to 1.4.17.
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to
1.4.17.
Tobias Geerinckx-Rice [Mon, 24 Aug 2020 02:21:42 +0000 (04:21 +0200)]
gnu: electrum: Fix share/ location.
* gnu/packages/finance.scm (electrum)[arguments]: Rename the ‘patch-home’
phase to ‘fix-prefix’. Do so.
Tobias Geerinckx-Rice [Mon, 24 Aug 2020 01:56:01 +0000 (03:56 +0200)]
gnu: electron-cash: Fix share/ location.
* gnu/packages/finance.scm (electron-cash)[arguments]: Drop bogus
‘local/share’ subdirectory: rename ‘patch-home’ to
‘create-output-directories’ and adjust body to match.
Tobias Geerinckx-Rice [Mon, 24 Aug 2020 01:19:00 +0000 (03:19 +0200)]
gnu: electron-cash: Return #t from phases.
* gnu/packages/finance.scm (electron-cash)[arguments]: Return truth from
all phases.
Tobias Geerinckx-Rice [Mon, 24 Aug 2020 01:18:08 +0000 (03:18 +0200)]
gnu: electrum: Return #t from phases.
* gnu/packages/finance.scm (electrum)[arguments]: Return truth from
‘patch-home’.
Tobias Geerinckx-Rice [Mon, 24 Aug 2020 00:26:03 +0000 (02:26 +0200)]
gnu: wireguard-tools: Cross-compile.
* gnu/packages/vpn.scm (wireguard-tools)[arguments]: Use CC-FOR-TARGET.
Tobias Geerinckx-Rice [Mon, 24 Aug 2020 00:17:00 +0000 (02:17 +0200)]
gnu: wireguard-tools: Update to 1.0.
20200820.
* gnu/packages/vpn.scm (wireguard-tools): Update to 1.0.
20200820.
Brendan Tildesley [Sun, 16 Aug 2020 07:03:15 +0000 (17:03 +1000)]
gnu: ebook.scm: Remove duplicate module import.
Signed-off-by: Leo Famulari <leo@famulari.name>
Martin Becze [Sun, 23 Aug 2020 18:56:39 +0000 (13:56 -0500)]
gnu: Added guile-srfi-145.
* gnu/packages/guile-xyz.scm (guile-srfi-145): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
Alexey Abramov [Tue, 18 Aug 2020 12:00:29 +0000 (14:00 +0200)]
gnu: dovecot: Add lucene library to support fts indexing.
* gnu/packages/mail.scm (dovecot)[inputs]: Add ice4c, clucene.
[arguments]: Add --with-lucene configuration switch.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Martin Becze [Sun, 23 Aug 2020 18:21:18 +0000 (13:21 -0500)]
gnu: Add akku.
* gnu/packages/package-management.scm (akku): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
Ludovic Courtès [Sun, 23 Aug 2020 20:48:19 +0000 (22:48 +0200)]
lint: formatting: Gracefully handle relative file names.
Fixes <https://bugs.gnu.org/42543>.
Reported by Jack Hill <jackhill@jackhill.us>.
* guix/lint.scm (check-formatting): Always return a list (previously we
would return #f when 'search-path' returns #f). Check whether
LOCATION's file is a relative file name. Return a warning if not.
* tests/guix-lint.sh: Add test.
Ludovic Courtès [Sun, 23 Aug 2020 20:11:31 +0000 (22:11 +0200)]
lint: Avoid calls to 'package-field-location' with #f as the field.
* guix/lint.scm (%make-warning): Call 'package-field-location' only when
FIELD is true.
Oleg Pykhalov [Sun, 23 Aug 2020 11:35:58 +0000 (14:35 +0300)]
gnu: emacs-bash-completion: Update to 3.1.0.
* gnu/packages/emacs-xyz.scm (emacs-bash-completion): Update to 3.1.0.
Tobias Geerinckx-Rice [Sun, 23 Aug 2020 15:53:55 +0000 (17:53 +0200)]
gnu: sane-backends-minimal: Update to 1.0.31.
* gnu/packages/scanner.scm (sane-backends-minimal): Update to 1.0.31.
[inputs]: Add libxml2.
Tobias Geerinckx-Rice [Sun, 23 Aug 2020 15:53:27 +0000 (17:53 +0200)]
gnu: parallel: Update to
20200822.
* gnu/packages/parallel.scm (parallel): Update to
20200822.
Oleg Pykhalov [Sun, 23 Aug 2020 11:29:50 +0000 (14:29 +0300)]
gnu: emacs-find-file-in-project: Update to 5.7.10.
* gnu/packages/emacs-xyz.scm (emacs-find-file-in-project): Update to 5.7.10.
Oleg Pykhalov [Sun, 23 Aug 2020 11:23:12 +0000 (14:23 +0300)]
gnu: emacs-ghub: Update to 3.4.1.
* gnu/packages/emacs-xyz.scm (emacs-ghub): Update to 3.4.1.
Oleg Pykhalov [Sun, 23 Aug 2020 10:45:21 +0000 (13:45 +0300)]
gnu: emacs-lsp-ui: Update to 7.0.1.
* gnu/packages/emacs-xyz.scm (emacs-lsp-ui): Update to 7.0.1.
Oleg Pykhalov [Sun, 23 Aug 2020 10:26:41 +0000 (13:26 +0300)]
gnu: emacs-org-re-reveal: Update to 3.1.0.
* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): Update to 3.1.0.
Efraim Flashner [Sun, 23 Aug 2020 08:02:11 +0000 (11:02 +0300)]
gnu: python-rpy2: Update to 3.3.5.
* gnu/packages/statistics.scm (python-rpy2): Update to 3.3.5.
[source]: Add patches to fix test failures.
[arguments]: Adjust custom 'check phase.
Oleg Pykhalov [Wed, 12 Aug 2020 05:52:08 +0000 (08:52 +0300)]
doc: cookbook: Add chapter about Guix environment.
* doc/guix-cookbook.texi (Environment management): New chapter.
Tobias Geerinckx-Rice [Sat, 22 Aug 2020 22:24:08 +0000 (00:24 +0200)]
gnu: net-snmp: Update to 5.9 [fixes CVE-2019-20892].
* gnu/packages/networking.scm (net-snmp): Update to 5.9.
[inputs]: Add ncurses.
[native-inputs]: Add pkg-config.
Jakub Kądziołka [Sat, 22 Aug 2020 20:40:59 +0000 (22:40 +0200)]
gnu: sameboy: Update to 0.13.6.
* gnu/packages/emulators.scm (sameboy): Update to 0.13.6.
Michael Rohleder [Sat, 22 Aug 2020 16:40:12 +0000 (18:40 +0200)]
gnu: lesspipe: Patch paths to inputs.
* gnu/packages/less.scm (lesspipe)[arguments]: Add phase to patch
paths to tput and file.
Signed-off-by: Leo Famulari <leo@famulari.name>
Danny Milosavljevic [Sat, 22 Aug 2020 18:26:17 +0000 (20:26 +0200)]
gnu: fc-host-tools: Update to 13.
* gnu/packages/embedded.scm (fc-host-tools): Update to 13.
[description]: Modify.
Adam Kandur [Wed, 12 Aug 2020 06:52:05 +0000 (09:52 +0300)]
gnu: Add sbcl-livesupport.
* gnu/packages/lisp-xyz.scm (sbcl-livesupport, cl-livesupport, ecl-livesupport):
New variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
Timotej Lazar [Mon, 17 Aug 2020 15:09:33 +0000 (17:09 +0200)]
gnu: lxqt: Enable keyboard shortcuts.
* gnu/packages/lxqt.scm (lxqt)[propagated-inputs]: Add lxqt-globalkeys.
Signed-off-by: Leo Famulari <leo@famulari.name>
Brendan Tildesley [Wed, 19 Aug 2020 08:56:56 +0000 (18:56 +1000)]
gnu: piper: Update to 0.5.1. Disable broken tests.
* gnu/packages/gnome.scm (piper): Update to 0.5.1. Disable tests.
Signed-off-by: Leo Famulari <leo@famulari.name>
Brendan Tildesley [Wed, 19 Aug 2020 08:56:55 +0000 (18:56 +1000)]
gnu: libratbag: Update to 0.14.
* gnu/packages/gnome.scm (libratbag): Update to 0.14.
Signed-off-by: Leo Famulari <leo@famulari.name>
Paul Garlick [Wed, 19 Aug 2020 12:03:52 +0000 (13:03 +0100)]
gnu: Add fullswof-2d.
* gnu/packages/simulation.scm (fullswof-2d): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
Vinicius Monego [Wed, 19 Aug 2020 23:56:02 +0000 (20:56 -0300)]
gnu: Add rtaudio.
* gnu/packages/audio.scm (rtaudio): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
Hendursaga [Sat, 22 Aug 2020 15:19:01 +0000 (15:19 +0000)]
gnu: Add dosage.
* gnu/packages/python-xyz.scm (dosage): New variable.
Martin Becze [Wed, 19 Aug 2020 17:03:18 +0000 (12:03 -0500)]
gnu: Add nicotine.
* gnu/packages/nicotine.scm (nicotine): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Leo Famulari <leo@famulari.name>
Oleg Pykhalov [Thu, 20 Aug 2020 17:19:54 +0000 (20:19 +0300)]
gnu: emacs-epkg: Update to 3.2.2.
* gnu/packages/emacs-xyz.scm (emacs-epkg): Update to 3.2.2.
Michael Rohleder [Sat, 22 Aug 2020 01:08:42 +0000 (03:08 +0200)]
gnu: jekyll: Loosen the requirement for kramdown.
* gnu/packages/ruby.scm (jekyll): Loosen the requirement for kramdown.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Mark H Weaver [Sat, 22 Aug 2020 01:53:00 +0000 (21:53 -0400)]
gnu: isc-dhcp: Update bundled BIND to 9.11.22 [security fixes].
Includes fixes for CVE-2020-8617, CVE-2020-8619, CVE-2020-8622,
CVE-2020-8623, and CVE-2020-8624.
* gnu/packages/admin.scm (isc-dhcp): Update bundled BIND to 9.11.22.
Mark H Weaver [Sat, 22 Aug 2020 01:45:50 +0000 (21:45 -0400)]
gnu: linux-libre@4.9: Update to 4.9.233.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.233.
(linux-libre-4.9-pristine-source): Update hash.
(deblob-scripts-4.9): Update to 4.9.232.
Mark H Weaver [Sat, 22 Aug 2020 01:44:24 +0000 (21:44 -0400)]
gnu: linux-libre@4.4: Update to 4.4.233.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.233.
(linux-libre-4.4-pristine-source): Update hash.
(deblob-scripts-4.4): Update to 4.4.232.
Mark H Weaver [Sat, 22 Aug 2020 01:01:17 +0000 (21:01 -0400)]
gnu: linux-libre: Update to 5.8.3.
* gnu/packages/linux.scm (linux-libre-5.8-version): Update to 5.8.3.
(linux-libre-5.8-pristine-source): Update hash.
Mark H Weaver [Sat, 22 Aug 2020 01:00:39 +0000 (21:00 -0400)]
gnu: linux-libre@5.7: Update to 5.7.17.
* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.17.
(linux-libre-5.7-pristine-source): Update hash.
Mark H Weaver [Sat, 22 Aug 2020 00:59:52 +0000 (20:59 -0400)]
gnu: linux-libre@5.4: Update to 5.4.60.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.60.
(linux-libre-5.4-pristine-source): Update hash.
Mark H Weaver [Sat, 22 Aug 2020 00:58:49 +0000 (20:58 -0400)]
gnu: linux-libre@4.19: Update to 4.19.141.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.141.
(linux-libre-4.19-pristine-source): Update hash.
Mark H Weaver [Sat, 22 Aug 2020 00:56:13 +0000 (20:56 -0400)]
gnu: linux-libre@4.14: Update to 4.14.194.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.194.
(linux-libre-4.14-pristine-source): Update hash.
Leo Famulari [Thu, 20 Aug 2020 20:03:46 +0000 (16:03 -0400)]
gnu: linux-libre: Update to 5.8.2.
* gnu/packages/aux-files/linux-libre/5.8-arm.conf,
gnu/packages/aux-files/linux-libre/5.8-arm64.conf,
gnu/packages/aux-files/linux-libre/5.8-i686.conf,
gnu/packages/aux-files/linux-libre/5.8-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Add them.
* gnu/packages/linux.scm (linux-libre-5.8): New variable.
(linux-libre-version, linux-libre-pristine-source, linux-libre-source,
linux-libre): Point to linux-libre-5.8*.
Leo Famulari [Mon, 10 Aug 2020 16:40:49 +0000 (12:40 -0400)]
gnu: Use a descriptive file-name for linux-libre deblobbing scripts.
Fixes <https://bugs.gnu.org/42789>.
* gnu/packages/linux.scm (linux-libre-deblob-scripts): Set the file-name of the
deblob and deblob-check scripts.
Prafulla Giri [Thu, 20 Aug 2020 15:44:29 +0000 (21:29 +0545)]
gnu: Add ronn-ng
* gnu/packages/groff.scm (ronn-ng): New public variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Tobias Geerinckx-Rice [Fri, 21 Aug 2020 03:16:09 +0000 (05:16 +0200)]
gnu: dovecot: Support zstd compression.
* gnu/packages/mail.scm (dovecot)[inputs]: Add zstd:lib.
Jakub Kądziołka [Fri, 21 Aug 2020 00:24:02 +0000 (02:24 +0200)]
gnu: vim: Update to 8.2.1500.
* gnu/packages/vim.scm (vim): Update to 8.2.1500.
Jakub Kądziołka [Thu, 20 Aug 2020 22:17:53 +0000 (00:17 +0200)]
gnu: vim: Install man pages.
Julien Lepiller [Thu, 20 Aug 2020 23:39:47 +0000 (01:39 +0200)]
gnu: enchant: Depend on hunspell.
* gnu/packages/enchant.scm (enchant): Add hunspell as an input.
Julien Lepiller [Thu, 20 Aug 2020 23:32:22 +0000 (01:32 +0200)]
gnu: hunspell-dict-en: Install all affix files.
* gnu/packages/aspell.scm (aspell-word-list): Install affix files
corresponding to installed dictionary files.
Eric Bavier [Thu, 20 Aug 2020 20:27:33 +0000 (15:27 -0500)]
gnu: libmhash: Fix use-after-free in tests.
* gnu/packages/patches/libmhash-hmac-fix-uaf.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mcrypt.scm (libmhash)[source]: Use it.
Ricardo Wurmus [Thu, 20 Aug 2020 18:42:38 +0000 (20:42 +0200)]
gnu: r-fourcseq: Update to 1.22.1.
* gnu/packages/cran.scm (r-fourcseq): Update to 1.22.1.
Ricardo Wurmus [Thu, 20 Aug 2020 18:42:35 +0000 (20:42 +0200)]
gnu: r-complexheatmap: Update to 2.4.3.
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.4.3.
Ricardo Wurmus [Thu, 20 Aug 2020 18:42:32 +0000 (20:42 +0200)]
gnu: r-gage: Update to 2.38.3.
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.38.3.
[propagated-inputs]: Add r-go-db.
Ricardo Wurmus [Thu, 20 Aug 2020 18:42:28 +0000 (20:42 +0200)]
gnu: r-annotationhub: Update to 2.20.2.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.20.2.
Ricardo Wurmus [Thu, 20 Aug 2020 18:42:24 +0000 (20:42 +0200)]
gnu: r-delayedarray: Update to 0.14.1.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.14.1.
Ricardo Wurmus [Thu, 20 Aug 2020 18:42:21 +0000 (20:42 +0200)]
gnu: r-annotationdbi: Update to 1.50.3.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.50.3.
Ricardo Wurmus [Thu, 20 Aug 2020 18:42:18 +0000 (20:42 +0200)]
gnu: r-biocviews: Update to 1.56.2.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.56.2.
Ricardo Wurmus [Thu, 20 Aug 2020 18:42:15 +0000 (20:42 +0200)]
gnu: r-biocset: Update to 1.2.2.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.2.
Ricardo Wurmus [Thu, 20 Aug 2020 18:42:11 +0000 (20:42 +0200)]
gnu: r-experimenthub: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.2.
Ricardo Wurmus [Thu, 20 Aug 2020 18:42:08 +0000 (20:42 +0200)]
gnu: r-variancepartition: Update to 1.18.3.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.3.
Ricardo Wurmus [Thu, 20 Aug 2020 18:42:05 +0000 (20:42 +0200)]
gnu: r-rsubread: Update to 2.2.6.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.6.
Ricardo Wurmus [Thu, 20 Aug 2020 18:42:02 +0000 (20:42 +0200)]
gnu: r-rbowtie: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.1.
Ricardo Wurmus [Thu, 20 Aug 2020 18:41:58 +0000 (20:41 +0200)]
gnu: r-biocfilecache: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.1.
Ricardo Wurmus [Thu, 20 Aug 2020 18:41:55 +0000 (20:41 +0200)]
gnu: r-rbowtie2: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.1.
Ricardo Wurmus [Thu, 20 Aug 2020 18:41:52 +0000 (20:41 +0200)]
gnu: r-motifstack: Update to 1.32.1.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.1.
Ricardo Wurmus [Thu, 20 Aug 2020 18:41:49 +0000 (20:41 +0200)]
gnu: r-clusterprofiler: Update to 3.16.1.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.1.
[propagated-inputs]: Add r-rlang.
Ricardo Wurmus [Thu, 20 Aug 2020 18:41:45 +0000 (20:41 +0200)]
gnu: r-gosemsim: Update to 2.14.1.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.1.
Ricardo Wurmus [Thu, 20 Aug 2020 18:41:42 +0000 (20:41 +0200)]
gnu: r-oligo: Update to 1.52.1.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.52.1.
Ricardo Wurmus [Thu, 20 Aug 2020 18:41:33 +0000 (20:41 +0200)]
gnu: r-oligoclasses: Update to 1.50.4.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.4.
Tobias Geerinckx-Rice [Thu, 20 Aug 2020 19:14:42 +0000 (21:14 +0200)]
gnu: bind: Update to 9.16.6 [multiple CVE fixes].
Fixes CVE-2020-8620, CVE-2020-8621, CVE-2020-8622, CVE-2020-8623, and
CVE-2020-8624.
* gnu/packages/dns.scm (isc-bind): Update to 9.16.6.
Tobias Geerinckx-Rice [Thu, 20 Aug 2020 17:57:00 +0000 (19:57 +0200)]
gnu: perl-catalyst-plugin-configloader: Update to 0.35.
* gnu/packages/web.scm (perl-catalyst-plugin-configloader): Update to 0.35.
Tobias Geerinckx-Rice [Thu, 20 Aug 2020 17:56:52 +0000 (19:56 +0200)]
gnu: perl-catalyst-devel: Update to 1.41.
* gnu/packages/web.scm (perl-catalyst-devel): Update to 1.41.
Tobias Geerinckx-Rice [Thu, 20 Aug 2020 17:29:24 +0000 (19:29 +0200)]
gnu: ne: Update to 3.3.0.
* gnu/packages/text-editors.scm (ne): Update to 3.3.0.
Tobias Geerinckx-Rice [Thu, 20 Aug 2020 17:11:05 +0000 (19:11 +0200)]
gnu: p11-kit: Update to 0.23.21.
* gnu/packages/tls.scm (p11-kit): Update to 0.23.21.
Ricardo Wurmus [Thu, 20 Aug 2020 17:24:48 +0000 (19:24 +0200)]
gnu: r-pbapply: Update to 1.4-3.
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-3.
Ricardo Wurmus [Thu, 20 Aug 2020 17:24:45 +0000 (19:24 +0200)]
gnu: r-chron: Update to 2.3-56.
* gnu/packages/statistics.scm (r-chron): Update to 2.3-56.
HCoop / jackhill / guix / guix.git / log