jackhill/guix/guix.git
3 years agognu: Add python-potr.
Raghav Gururajan [Fri, 11 Sep 2020 16:45:24 +0000 (12:45 -0400)]
gnu: Add python-potr.

* gnu/packages/python-crypto.scm (python-potr): New variable.

3 years agognu: Add python-slixmpp.
Raghav Gururajan [Fri, 11 Sep 2020 18:34:02 +0000 (14:34 -0400)]
gnu: Add python-slixmpp.

* gnu/packages/python-xyz.scm (python-slixmpp): New variable.

3 years agognu: ebusd: Enable MQTT support.
Danny Milosavljevic [Sat, 12 Sep 2020 00:05:57 +0000 (02:05 +0200)]
gnu: ebusd: Enable MQTT support.

* gnu/packages/embedded.scm (ebusd)[inputs]: Add mosquitto.

3 years agognu: Add mosquitto.
Danny Milosavljevic [Sat, 12 Sep 2020 00:04:28 +0000 (02:04 +0200)]
gnu: Add mosquitto.

* gnu/packages/messaging.scm (mosquitto): New variable.

3 years agognu: lldpd: Update to 1.0.6.
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 20:35:32 +0000 (22:35 +0200)]
gnu: lldpd: Update to 1.0.6.

* gnu/packages/networking.scm (lldpd): Update to 1.0.6.

3 years agognu: enet: Update to 1.3.16.
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 20:32:33 +0000 (22:32 +0200)]
gnu: enet: Update to 1.3.16.

* gnu/packages/networking.scm (enet): Update to 1.3.16.

3 years agognu: batctl: Update to 2020.3.
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 20:27:13 +0000 (22:27 +0200)]
gnu: batctl: Update to 2020.3.

* gnu/packages/networking.scm (batctl): Update to 2020.3.

3 years agoRevert "gnu: dovecot: Set moduledir to global directory."
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 21:29:50 +0000 (23:29 +0200)]
Revert "gnu: dovecot: Set moduledir to global directory."

This reverts commit db0109be42547d5dbb0fc1eb8ae30ccc968ed88b.
Same reason as commit d9d88c2ff0d367599d0a851ccf9377c4e21079d6.

3 years agoRevert "services: dovecot: Use modules via symlink to system profile."
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 20:19:02 +0000 (22:19 +0200)]
Revert "services: dovecot: Use modules via symlink to system profile."

This reverts commit bcfe0f0c1e9a2b91049d7c6c591c7f0c6a002c14 for now.

It breaks most current use(r)s of the Dovecot service and needs to be
combined with an extra modules configuration field of some kind.

See <https://issues.guix.gnu.org/43347>.

3 years agognu: padthv1: Update to 0.9.17.
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 17:17:29 +0000 (19:17 +0200)]
gnu: padthv1: Update to 0.9.17.

* gnu/packages/music.scm (padthv1): Update to 0.9.17.
[inputs]: Replace fftw with fftwf.

3 years agognu: libetpan: Update to 1.9.4.
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 15:04:57 +0000 (17:04 +0200)]
gnu: libetpan: Update to 1.9.4.

* gnu/packages/mail.scm (libetpan): Update to 1.9.4.

3 years agognu: bsequencer: Update to 1.6.0.
Ricardo Wurmus [Fri, 11 Sep 2020 20:19:26 +0000 (22:19 +0200)]
gnu: bsequencer: Update to 1.6.0.

* gnu/packages/music.scm (bsequencer): Update to 1.6.0.

3 years agognu: r-adaptivesparsity: End build phase on #T.
Ricardo Wurmus [Fri, 11 Sep 2020 20:04:41 +0000 (22:04 +0200)]
gnu: r-adaptivesparsity: End build phase on #T.

* gnu/packages/cran.scm (r-adaptivesparsity)[arguments]: End phase
"link-against-armadillo" with Boolean.

3 years agognu: r-adaptivesparsity: Fix case of "Gaussian".
Ricardo Wurmus [Fri, 11 Sep 2020 20:04:12 +0000 (22:04 +0200)]
gnu: r-adaptivesparsity: Fix case of "Gaussian".

* gnu/packages/cran.scm (r-adaptivesparsity)[description]: Fix typo.

3 years agognu: r-qtl: Use CRAN-URI.
Ricardo Wurmus [Fri, 11 Sep 2020 20:02:22 +0000 (22:02 +0200)]
gnu: r-qtl: Use CRAN-URI.

* gnu/packages/cran.scm (r-qtl)[source]: Use CRAN-URI instead of explicit
mirror URL.

3 years agognu: r-qtl: Correct indentation.
Ricardo Wurmus [Fri, 11 Sep 2020 20:00:30 +0000 (22:00 +0200)]
gnu: r-qtl: Correct indentation.

* gnu/packages/cran.scm (r-qtl): Reindent.
[description]: Reflow paragraphs.

3 years agognu: r-absfiltergsea: Move to (gnu packages cran).
zimoun [Fri, 11 Sep 2020 18:08:48 +0000 (20:08 +0200)]
gnu: r-absfiltergsea: Move to (gnu packages cran).

* gnu/packages/bioinformatics.scm (r-absfiltergsea): Move from here...
* gnu/packages/cran.scm (r-absfiltergsea): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: r-diversitree: Move to (gnu packages cran).
zimoun [Fri, 11 Sep 2020 18:08:47 +0000 (20:08 +0200)]
gnu: r-diversitree: Move to (gnu packages cran).

* gnu/packages/bioinformatics.scm (r-diversitree): Move from here...
* gnu/packages/cran.scm (r-diversitree): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: r-phangorn: Move to (gnu packages cran).
zimoun [Fri, 11 Sep 2020 18:08:49 +0000 (20:08 +0200)]
gnu: r-phangorn: Move to (gnu packages cran).

* gnu/packages/bioinformatics.scm (r-phangorn): Move from here...
* gnu/packages/cran.scm (r-phangorn): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: r-seurat: Move to (gnu packages cran).
zimoun [Fri, 11 Sep 2020 18:08:46 +0000 (20:08 +0200)]
gnu: r-seurat: Move to (gnu packages cran).

* gnu/packages/bioinformatics.scm (r-seurat): Move from here...
* gnu/packages/cran.scm (r-seurat): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: r-maldiquant: Move to (gnu packages cran).
zimoun [Fri, 11 Sep 2020 18:08:45 +0000 (20:08 +0200)]
gnu: r-maldiquant: Move to (gnu packages cran).

* gnu/packages/bioinformatics.scm (r-maldiquant): Move from here...
* gnu/packages/cran.scm (r-maldiquant): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: r-seqminer: Move to (gnu packages cran).
zimoun [Fri, 11 Sep 2020 18:08:44 +0000 (20:08 +0200)]
gnu: r-seqminer: Move to (gnu packages cran).

* gnu/packages/bioinformatics.scm (r-seqminer): Move from here...
* gnu/packages/cran.scm (r-seqminer): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: r-qtl2: Move to (gnu packages cran).
zimoun [Fri, 11 Sep 2020 18:08:43 +0000 (20:08 +0200)]
gnu: r-qtl2: Move to (gnu packages cran).

* gnu/packages/bioinformatics.scm (r-qtl2): Move from here...
* gnu/packages/cran.scm (r-qtl2): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: r-qtl: Move to (gnu packages cran).
zimoun [Fri, 11 Sep 2020 18:08:42 +0000 (20:08 +0200)]
gnu: r-qtl: Move to (gnu packages cran).

* gnu/packages/bioinformatics.scm (r-qtl): Move from here...
* gnu/packages/cran.scm (r-qtl): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: r-igraph: Move to (gnu packages cran).
zimoun [Fri, 11 Sep 2020 18:08:41 +0000 (20:08 +0200)]
gnu: r-igraph: Move to (gnu packages cran).

* gnu/packages/graph.scm (r-igraph): Move from here...
* gnu/packages/cran.scm (r-igraph): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: r-diffusionmap: Move to (gnu packages cran).
zimoun [Fri, 11 Sep 2020 18:08:40 +0000 (20:08 +0200)]
gnu: r-diffusionmap: Move to (gnu packages cran).

* gnu/packages/graph.scm (r-diffusionmap): Move from here...
* gnu/packages/cran.scm (r-diffusionmap): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: r-adaptivesparsity: Move to (gnu packages cran).
zimoun [Fri, 11 Sep 2020 18:08:39 +0000 (20:08 +0200)]
gnu: r-adaptivesparsity: Move to (gnu packages cran).

* gnu/packages/machine-learning.scm (r-adaptivesparsity): Move from here...
* gnu/packages/cran.scm (r-adaptivesparsity): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: r-codedepends: Comment why it is in bioconductor.scm.
zimoun [Fri, 11 Sep 2020 18:08:38 +0000 (20:08 +0200)]
gnu: r-codedepends: Comment why it is in bioconductor.scm.

* gnu/packages/bioconductor.scm (r-codedepends): Add comment.

3 years agognu: Add r-fhtest.
Peter Lo [Fri, 11 Sep 2020 19:01:53 +0000 (21:01 +0200)]
gnu: Add r-fhtest.

* gnu/packages/bioconductor.scm (r-fhtest): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-interval.
Peter Lo [Fri, 11 Sep 2020 19:01:30 +0000 (21:01 +0200)]
gnu: Add r-interval.

* gnu/packages/bioconductor.scm (r-interval): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-perm.
Peter Lo [Mon, 29 Jun 2020 08:03:38 +0000 (16:03 +0800)]
gnu: Add r-perm.

* gnu/packages/cran.scm (r-perm): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-mlecens.
Peter Lo [Mon, 29 Jun 2020 08:03:37 +0000 (16:03 +0800)]
gnu: Add r-mlecens.

* gnu/packages/cran.scm (r-mlecens): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-icens.
Peter Lo [Mon, 29 Jun 2020 08:03:36 +0000 (16:03 +0800)]
gnu: Add r-icens.

* gnu/packages/bioconductor.scm (r-icens): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: r-tidymodels: Update to 0.1.1.
Ricardo Wurmus [Fri, 11 Sep 2020 17:04:21 +0000 (19:04 +0200)]
gnu: r-tidymodels: Update to 0.1.1.

* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.1.
[propagated-inputs]: Remove r-pillar, r-tidyposterior, r-tidypredict, and
r-tidytext; add r-modeldata and r-tidyr.
[native-inputs]: Add r-rmarkdown, pandoc, and pandoc-citeproc.

3 years agognu: r-infer: Update to 0.5.3.
Ricardo Wurmus [Fri, 11 Sep 2020 17:06:33 +0000 (19:06 +0200)]
gnu: r-infer: Update to 0.5.3.

* gnu/packages/cran.scm (r-infer): Update to 0.5.3.

3 years agognu: Add r-modeldata.
Ricardo Wurmus [Fri, 11 Sep 2020 17:06:26 +0000 (19:06 +0200)]
gnu: Add r-modeldata.

* gnu/packages/cran.scm (r-modeldata): New variable.

3 years agognu: r-parsnip: Update to 0.1.3.
Ricardo Wurmus [Fri, 11 Sep 2020 17:04:10 +0000 (19:04 +0200)]
gnu: r-parsnip: Update to 0.1.3.

* gnu/packages/cran.scm (r-parsnip): Update to 0.1.3.

3 years agognu: r-tidytext: Update to 0.2.5.
Ricardo Wurmus [Fri, 11 Sep 2020 17:04:06 +0000 (19:04 +0200)]
gnu: r-tidytext: Update to 0.2.5.

* gnu/packages/cran.scm (r-tidytext): Update to 0.2.5.
[propagated-inputs]: Remove r-stopwords; add r-tibble.

3 years agognu: r-tidypredict: Update to 0.4.6.
Ricardo Wurmus [Fri, 11 Sep 2020 17:04:01 +0000 (19:04 +0200)]
gnu: r-tidypredict: Update to 0.4.6.

* gnu/packages/cran.scm (r-tidypredict): Update to 0.4.6.

3 years agognu: r-tune: Update to 0.1.1.
Ricardo Wurmus [Fri, 11 Sep 2020 17:03:58 +0000 (19:03 +0200)]
gnu: r-tune: Update to 0.1.1.

* gnu/packages/cran.scm (r-tune): Update to 0.1.1.
[propagated-inputs]: Add r-vctrs.

3 years agognu: r-dials: Update to 0.0.8.
Ricardo Wurmus [Fri, 11 Sep 2020 17:03:54 +0000 (19:03 +0200)]
gnu: r-dials: Update to 0.0.8.

* gnu/packages/cran.scm (r-dials): Update to 0.0.8.

3 years agognu: r-yardstick: Update to 0.0.7.
Ricardo Wurmus [Fri, 11 Sep 2020 17:03:51 +0000 (19:03 +0200)]
gnu: r-yardstick: Update to 0.0.7.

* gnu/packages/cran.scm (r-yardstick): Update to 0.0.7.
[propagated-inputs]: Remove r-rcpp.

3 years agognu: r-workflows: Update to 0.1.3.
Ricardo Wurmus [Fri, 11 Sep 2020 17:03:46 +0000 (19:03 +0200)]
gnu: r-workflows: Update to 0.1.3.

* gnu/packages/cran.scm (r-workflows): Update to 0.1.3.

3 years agognu: r-hardhat: Update to 0.1.4.
Ricardo Wurmus [Fri, 11 Sep 2020 17:03:43 +0000 (19:03 +0200)]
gnu: r-hardhat: Update to 0.1.4.

* gnu/packages/cran.scm (r-hardhat): Update to 0.1.4.

3 years agognu: Add r-tidymodels.
Peter Lo [Mon, 29 Jun 2020 05:50:42 +0000 (13:50 +0800)]
gnu: Add r-tidymodels.

* gnu/packages/cran.scm (r-tidymodels): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-infer.
Peter Lo [Mon, 29 Jun 2020 05:50:41 +0000 (13:50 +0800)]
gnu: Add r-infer.

* gnu/packages/cran.scm (r-infer): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-parsnip.
Peter Lo [Mon, 29 Jun 2020 05:50:40 +0000 (13:50 +0800)]
gnu: Add r-parsnip.

* gnu/packages/cran.scm (r-parsnip): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-tidytext.
Peter Lo [Mon, 29 Jun 2020 05:50:39 +0000 (13:50 +0800)]
gnu: Add r-tidytext.

* gnu/packages/cran.scm (r-tidytext): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-hunspell.
Peter Lo [Mon, 29 Jun 2020 05:50:38 +0000 (13:50 +0800)]
gnu: Add r-hunspell.

* gnu/packages/cran.scm (r-hunspell): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-tokenizers.
Peter Lo [Mon, 29 Jun 2020 05:50:37 +0000 (13:50 +0800)]
gnu: Add r-tokenizers.

* gnu/packages/cran.scm (r-tokenizers): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-janeaustenr.
Peter Lo [Mon, 29 Jun 2020 05:50:36 +0000 (13:50 +0800)]
gnu: Add r-janeaustenr.

* gnu/packages/cran.scm (r-janeaustenr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-tidypredict.
Peter Lo [Mon, 29 Jun 2020 05:50:35 +0000 (13:50 +0800)]
gnu: Add r-tidypredict.

* gnu/packages/cran.scm (r-tidypredict): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-tidyposterior.
Peter Lo [Mon, 29 Jun 2020 05:50:34 +0000 (13:50 +0800)]
gnu: Add r-tidyposterior.

* gnu/packages/cran.scm (r-tidyposterior): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-tune.
Peter Lo [Mon, 29 Jun 2020 05:50:33 +0000 (13:50 +0800)]
gnu: Add r-tune.

* gnu/packages/cran.scm (r-tune): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-dials.
Peter Lo [Mon, 29 Jun 2020 05:50:32 +0000 (13:50 +0800)]
gnu: Add r-dials.

* gnu/packages/cran.scm (r-dials): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-dicedesign.
Peter Lo [Mon, 29 Jun 2020 05:50:31 +0000 (13:50 +0800)]
gnu: Add r-dicedesign.

* gnu/packages/cran.scm (r-dicedesign): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-rsample.
Peter Lo [Mon, 29 Jun 2020 05:50:30 +0000 (13:50 +0800)]
gnu: Add r-rsample.

* gnu/packages/cran.scm (r-rsample): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-yardstick.
Peter Lo [Mon, 29 Jun 2020 05:50:29 +0000 (13:50 +0800)]
gnu: Add r-yardstick.

* gnu/packages/cran.scm (r-yardstick): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-gpfit.
Peter Lo [Mon, 29 Jun 2020 05:50:28 +0000 (13:50 +0800)]
gnu: Add r-gpfit.

* gnu/packages/cran.scm (r-gpfit): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-hardhat.
Peter Lo [Mon, 29 Jun 2020 05:50:26 +0000 (13:50 +0800)]
gnu: Add r-hardhat.

* gnu/packages/cran.scm (r-hardhat): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-workflows.
Peter Lo [Mon, 29 Jun 2020 05:50:27 +0000 (13:50 +0800)]
gnu: Add r-workflows.

* gnu/packages/cran.scm (r-workflows): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add reproc.
Alexandros Theodotou [Thu, 10 Sep 2020 12:45:25 +0000 (13:45 +0100)]
gnu: Add reproc.

* gnu/packages/cpp.scm (reproc): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
3 years agodaemon: Simplify interface with 'guix authenticate'.
Ludovic Courtès [Tue, 8 Sep 2020 13:00:29 +0000 (15:00 +0200)]
daemon: Simplify interface with 'guix authenticate'.

There's no reason at this point to mimic the calling convention of the
'openssl' command.

* nix/libstore/local-store.cc (LocalStore::exportPath): Add only "sign"
and HASH to ARGS.  Remove 'tmpDir' and 'hashFile'.
(LocalStore::importPath): Add only "verify" and SIGNATURE to
* guix/scripts/authenticate.scm (guix-authenticate): Adjust
accordingly; remove the OpenSSL-style clauses.
(read-hash-data): Remove.
(sign-with-key): Replace 'port' with 'sha256' and adjust accordingly.
(validate-signature): Export SIGNATURE to be a canonical sexp.
* tests/guix-authenticate.sh: Adjust tests accordingly.

3 years agodoc: Distinguish the "nar bundle" format from "nar".
Ludovic Courtès [Tue, 8 Sep 2020 12:59:01 +0000 (14:59 +0200)]
doc: Distinguish the "nar bundle" format from "nar".

* doc/guix.texi (Invoking guix archive): Introduce the term "nar bundle"
and clarify what the output of "guix archive --export" really is.
* guix/nar.scm (restore-one-item, restore-file-set): Use the term "nar
bundle" in docstrings.

3 years agostore: Test 'import-paths' with unauthorized and unsigned nar bundles.
Ludovic Courtès [Tue, 8 Sep 2020 12:47:41 +0000 (14:47 +0200)]
store: Test 'import-paths' with unauthorized and unsigned nar bundles.

* tests/store.scm ("import not signed")
("import signed by unauthorized key"): New tests.

3 years agognu: hangups: Update to 0.4.11.
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 14:10:21 +0000 (16:10 +0200)]
gnu: hangups: Update to 0.4.11.

* gnu/packages/messaging.scm (hangups): Update to 0.4.11.

3 years agognu: samplv1: Update to 0.9.17.
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 14:06:39 +0000 (16:06 +0200)]
gnu: samplv1: Update to 0.9.17.

* gnu/packages/music.scm (samplv1): Update to 0.9.17.

3 years agognu: drumkv1: Update to 0.9.17.
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 14:06:33 +0000 (16:06 +0200)]
gnu: drumkv1: Update to 0.9.17.

* gnu/packages/music.scm (drumkv1): Update to 0.9.17.

3 years agognu: synthv1: Update to 0.9.17.
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 14:06:26 +0000 (16:06 +0200)]
gnu: synthv1: Update to 0.9.17.

* gnu/packages/music.scm (synthv1): Update to 0.9.17.

3 years agognu: moreutils: Update to 0.64.
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 14:05:33 +0000 (16:05 +0200)]
gnu: moreutils: Update to 0.64.

* gnu/packages/moreutils.scm (moreutils): Update to 0.64.

3 years agognu: libostree: Update to 2020.6.
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 13:20:32 +0000 (15:20 +0200)]
gnu: libostree: Update to 2020.6.

* gnu/packages/package-management.scm (libostree): Update to 2020.6.

3 years agognu: highlight: Update to 3.58.
Tobias Geerinckx-Rice [Thu, 10 Sep 2020 23:02:43 +0000 (01:02 +0200)]
gnu: highlight: Update to 3.58.

* gnu/packages/pretty-print.scm (highlight): Update to 3.58.

3 years agognu: xonsh: Update to 0.9.21.
Tobias Geerinckx-Rice [Thu, 10 Sep 2020 23:01:21 +0000 (01:01 +0200)]
gnu: xonsh: Update to 0.9.21.

* gnu/packages/shells.scm (xonsh): Update to 0.9.21.

3 years agognu: libwps: Update to 0.4.12.
Tobias Geerinckx-Rice [Thu, 10 Sep 2020 23:00:16 +0000 (01:00 +0200)]
gnu: libwps: Update to 0.4.12.

* gnu/packages/libreoffice.scm (libwps): Update to 0.4.12.

3 years agognu: svt-av1: Update to 0.8.5.
Tobias Geerinckx-Rice [Thu, 10 Sep 2020 17:10:04 +0000 (19:10 +0200)]
gnu: svt-av1: Update to 0.8.5.

* gnu/packages/video.scm (svt-av1): Update to 0.8.5.

3 years agoservices: dovecot: Only serialize settings with non-empty values.
Alexey Abramov [Tue, 8 Sep 2020 13:53:44 +0000 (15:53 +0200)]
services: dovecot: Only serialize settings with non-empty values.

* gnu/services/mail.scm (serialize-space-separated-string-list): Protocols
might have custom settings, which are not supported by other protocols. To
prevent dovecot/services from crashing, serialize settings that hold non-empty
values only.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
3 years agognu: mcabber: Update to 1.1.1.
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 14:20:30 +0000 (16:20 +0200)]
gnu: mcabber: Update to 1.1.1.

* gnu/packages/messaging.scm (mcabber): Update to 1.1.1.

3 years agognu: fetchmail: Update to 6.4.12.
Tobias Geerinckx-Rice [Fri, 11 Sep 2020 14:27:45 +0000 (16:27 +0200)]
gnu: fetchmail: Update to 6.4.12.

* gnu/packages/mail.scm (fetchmail): Update to 6.4.12.

3 years agognu: dragonfly-reverb: Update to 3.2.1.
Alexandros Theodotou [Thu, 10 Sep 2020 18:32:52 +0000 (19:32 +0100)]
gnu: dragonfly-reverb: Update to 3.2.1.

* gnu/packages/music.scm (dragonfly-reverb): Update to 3.2.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
3 years agognu: Add hexyl.
Gabriel Arazas [Thu, 10 Sep 2020 11:27:31 +0000 (19:27 +0800)]
gnu: Add hexyl.

* gnu/packages/rust-apps.scm (hexyl): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
3 years agognu: geonkick: Update to 2.3.7.
Alexandros Theodotou [Thu, 10 Sep 2020 16:50:27 +0000 (17:50 +0100)]
gnu: geonkick: Update to 2.3.7.

* gnu/packages/music.scm (geonkick): Update to 2.3.7.
[native-inputs]: Add gcc-9.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
3 years agognu: redkite: Update to 1.0.3.
Alexandros Theodotou [Thu, 10 Sep 2020 16:49:06 +0000 (17:49 +0100)]
gnu: redkite: Update to 1.0.3.

* gnu/packages/audio.scm (redkite): Update to 1.0.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
3 years agognu: libhandy: Update to 1.0.0.
Leo Prikler [Fri, 11 Sep 2020 09:16:20 +0000 (11:16 +0200)]
gnu: libhandy: Update to 1.0.0.

* gnu/packages/gnome.scm (libhandy): Update to 1.0.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
3 years agognu: Add r-config.
Peter Lo [Sun, 28 Jun 2020 08:57:44 +0000 (16:57 +0800)]
gnu: Add r-config.

* gnu/packages/cran.scm (r-config): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-forge.
Peter Lo [Sun, 28 Jun 2020 08:57:43 +0000 (16:57 +0800)]
gnu: Add r-forge.

* gnu/packages/cran.scm (r-forge): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: r-survminer: Update to 0.4.8.
Ricardo Wurmus [Fri, 11 Sep 2020 09:06:59 +0000 (11:06 +0200)]
gnu: r-survminer: Update to 0.4.8.

* gnu/packages/cran.scm (r-survminer): Update to 0.4.8.

3 years agognu: Add r-survminer.
Peter Lo [Sun, 28 Jun 2020 09:29:44 +0000 (17:29 +0800)]
gnu: Add r-survminer.

* gnu/packages/cran.scm (r-survminer): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-maxstat.
Peter Lo [Sun, 28 Jun 2020 09:29:43 +0000 (17:29 +0800)]
gnu: Add r-maxstat.

* gnu/packages/cran.scm (r-maxstat): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-exactranktests.
Peter Lo [Sun, 28 Jun 2020 09:29:42 +0000 (17:29 +0800)]
gnu: Add r-exactranktests.

* gnu/packages/cran.scm (r-exactranktests): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-survmisc.
Peter Lo [Sun, 28 Jun 2020 09:29:41 +0000 (17:29 +0800)]
gnu: Add r-survmisc.

* gnu/packages/cran.scm (r-survmisc): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-kmsurv.
Peter Lo [Sun, 28 Jun 2020 09:29:40 +0000 (17:29 +0800)]
gnu: Add r-kmsurv.

* gnu/packages/cran.scm (r-kmsurv): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-km-ci.
Peter Lo [Sun, 28 Jun 2020 09:29:39 +0000 (17:29 +0800)]
gnu: Add r-km-ci.

* gnu/packages/cran.scm (r-km-ci): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-transphylo.
Antoine Côté [Mon, 29 Jun 2020 15:05:18 +0000 (11:05 -0400)]
gnu: Add r-transphylo.

* gnu/packages/cran.scm (r-transphylo): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-laplacesdemon.
Vinicius Monego [Fri, 11 Sep 2020 06:59:52 +0000 (08:59 +0200)]
gnu: Add r-laplacesdemon.

* gnu/packages/cran.scm (r-laplacesdemon): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: guitarix: Update to 0.41.0.
Ricardo Wurmus [Fri, 11 Sep 2020 06:23:57 +0000 (08:23 +0200)]
gnu: guitarix: Update to 0.41.0.

* gnu/packages/audio.scm (guitarix): Update to 0.41.0.
[inputs]: Remove gtkmm-2 and gtk+-2; add gtkmm and gtk+.
[native-inputs]: Add sassc.
[arguments]: Do not use Python 2; remove phase "fix-boost-includes".

3 years agognu: Add r-flexsurv.
Peter Lo [Fri, 11 Sep 2020 05:25:43 +0000 (07:25 +0200)]
gnu: Add r-flexsurv.

* gnu/packages/cran.scm (r-flexsurv): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add r-muhaz.
Peter Lo [Fri, 11 Sep 2020 05:21:31 +0000 (07:21 +0200)]
gnu: Add r-muhaz.

* gnu/packages/cran.scm (r-muhaz): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
3 years agognu: Add bschaffl.
Ricardo Wurmus [Fri, 11 Sep 2020 05:15:14 +0000 (07:15 +0200)]
gnu: Add bschaffl.

* gnu/packages/music.scm (bschaffl): New variable.

3 years agognu: Add praat.
Julien Lepiller [Thu, 10 Sep 2020 22:24:42 +0000 (00:24 +0200)]
gnu: Add praat.

* gnu/packages/language.scm (praat): New variable.

3 years agognu: Add ttyebus-linux-module.
Danny Milosavljevic [Thu, 10 Sep 2020 22:06:15 +0000 (00:06 +0200)]
gnu: Add ttyebus-linux-module.

* gnu/packages/linux.scm (ttyebus-linux-module): New variable.