jackhill/guix/guix.git
5 years agobuild-self: Emit a useful message upon error.
Ludovic Courtès [Thu, 13 Sep 2018 08:23:39 +0000 (10:23 +0200)]
build-self: Emit a useful message upon error.

* build-aux/build-self.scm (build): Raise a '&message' condition instead
of calling 'error'.

5 years agobuild-self: Add a dummy (git) module to 'compute-guix-derivation'.
Ludovic Courtès [Thu, 13 Sep 2018 08:10:49 +0000 (10:10 +0200)]
build-self: Add a dummy (git) module to 'compute-guix-derivation'.

Fixes a regression introduced in
aed0a594058a59bc3bb1d2686391dc0e8a181b1f.

* build-aux/build-self.scm (build-program)[fake-git]: New variable.
Use it as an imported module.

5 years agohydra: Add support for manifests.
Clément Lassieur [Mon, 27 Aug 2018 20:47:14 +0000 (22:47 +0200)]
hydra: Add support for manifests.

* build-aux/hydra/gnu-system.scm (arguments->manifests, manifests->packages):
New procedures.
(hydra-jobs): Add a "manifests" subset.
* doc/guix.texi (Continuous Integration): Update accordingly.

5 years agognu: rust@1.20.0: Replace "default-ar" by "ar".
Danny Milosavljevic [Wed, 12 Sep 2018 23:05:55 +0000 (01:05 +0200)]
gnu: rust@1.20.0: Replace "default-ar" by "ar".

* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Replace
"default-ar" by "ar".

5 years agognu: Add rust@1.22.1.
Danny Milosavljevic [Wed, 12 Sep 2018 22:55:33 +0000 (00:55 +0200)]
gnu: Add rust@1.22.1.

* gnu/packages/rust.scm (rust-1.22): New variable.

5 years agognu: Add rust@1.21.0.
Danny Milosavljevic [Wed, 12 Sep 2018 22:53:22 +0000 (00:53 +0200)]
gnu: Add rust@1.21.0.

* gnu/packages/rust.scm (rust-1.21): New variable.

5 years agognu: rust-bootstrap: Clean up comments.
Danny Milosavljevic [Wed, 12 Sep 2018 22:39:39 +0000 (00:39 +0200)]
gnu: rust-bootstrap: Clean up comments.

* gnu/packages/rust.scm (rust-bootstrap): Clean up comments.

5 years agognu: rust: Move "cc" from rust-bootstrap to rust proper.
Danny Milosavljevic [Wed, 12 Sep 2018 22:37:15 +0000 (00:37 +0200)]
gnu: rust: Move "cc" from rust-bootstrap to rust proper.

* gnu/packages/rust.scm (rust-bootstrap)[arguments]<#:phases>[install]:
Delete "cc".
(rust-1.23)[arguments]<#:phases>: Delete "provide-cc" deletion.

5 years agognu: rust@1.23.0: Use rust@1.20.0 as template.
Danny Milosavljevic [Wed, 12 Sep 2018 22:25:39 +0000 (00:25 +0200)]
gnu: rust@1.23.0: Use rust@1.20.0 as template.

* gnu/packages/rust.scm (rust-1.23)[inherit]: Use rust-1.20.
[arguments]<#:phases>: Delete "patch-cargo-tomls" phase deletion.
Add "provide-cc" phase deletion.
Add "configure-archiver" phase deletion.
[configure]: Inherit phase.
[reset-timestamps-after-changes]: Inherit phase.
[build]: Inherit phase.
[check]: Inherit phase.
[install]: Inherit phase.
[wrap-rustc]: Inherit phase.

5 years agognu: Add emacs-org-reveal.
Maxim Cournoyer [Thu, 6 Sep 2018 15:21:51 +0000 (11:21 -0400)]
gnu: Add emacs-org-reveal.

* gnu/packages/emacs.scm (emacs-org-reveal): New variable.

5 years agognu: Add emacs-elpy.
Maxim Cournoyer [Tue, 13 Feb 2018 03:10:31 +0000 (22:10 -0500)]
gnu: Add emacs-elpy.

* gnu/packages/emacs.scm (emacs-elpy): New variable.

5 years agognu: Add emacs-highlight-indentation.
Maxim Cournoyer [Tue, 13 Feb 2018 03:10:03 +0000 (22:10 -0500)]
gnu: Add emacs-highlight-indentation.

* gnu/packages/emacs.scm (emacs-highlight-indentation): New variable.

5 years agognu: Add emacs-pyvenv.
Maxim Cournoyer [Tue, 13 Feb 2018 03:09:43 +0000 (22:09 -0500)]
gnu: Add emacs-pyvenv.

* gnu/packages/emacs.scm (emacs-pyvenv): New variable.

5 years agognu: Add emacs-find-file-in-project.
Maxim Cournoyer [Tue, 13 Feb 2018 03:09:12 +0000 (22:09 -0500)]
gnu: Add emacs-find-file-in-project.

* gnu/packages/emacs.scm (emacs-find-file-in-project): New variable.

5 years agognu: Add emacs-mocker.
Maxim Cournoyer [Tue, 13 Feb 2018 03:08:37 +0000 (22:08 -0500)]
gnu: Add emacs-mocker.

* gnu/packages/emacs.scm (emacs-mocker): New variable.

5 years agognu: Add emacs-el-x.
Maxim Cournoyer [Tue, 13 Feb 2018 03:08:03 +0000 (22:08 -0500)]
gnu: Add emacs-el-x.

* gnu/packages/emacs.scm (emacs-el-x): New variable.

5 years agognu: Add python-black.
Maxim Cournoyer [Mon, 27 Aug 2018 03:58:26 +0000 (23:58 -0400)]
gnu: Add python-black.

* gnu/packages/python.scm (python-black): New variable.

5 years agognu: Add python-toml.
Maxim Cournoyer [Mon, 27 Aug 2018 03:56:15 +0000 (23:56 -0400)]
gnu: Add python-toml.

* gnu/packages/python.scm (python-toml): New variables.

5 years agognu: python-jedi: Update to 0.12.1.
Maxim Cournoyer [Sun, 26 Aug 2018 21:35:46 +0000 (17:35 -0400)]
gnu: python-jedi: Update to 0.12.1.

* gnu/packages/python.scm (python-jedi): Update to 0.12.1.
[propagated-inputs]: Move python-parso here, as it is required at run time.

5 years agognu: Add rust@1.20.0.
Danny Milosavljevic [Wed, 12 Sep 2018 21:15:27 +0000 (23:15 +0200)]
gnu: Add rust@1.20.0.

* gnu/packages/rust.scm (rust-1.20): New variable.

5 years agogit-download: Rewrite 'git-predicate' using Guile-Git.
Ludovic Courtès [Wed, 12 Sep 2018 21:56:34 +0000 (23:56 +0200)]
git-download: Rewrite 'git-predicate' using Guile-Git.

Fixes <https://bugs.gnu.org/27925>.

* guix/git-download.scm (files->directory-tree)
(directory-in-tree?): Remove.
(git-file-list): New procedures.
(git-predicate): Use it instead of opening a pipe to 'git'.  Remove
directory tree hack and rely exclusively on inode/device numbers.

5 years agognu: rust@1.19.0: Remove superfluous install-file call.
Danny Milosavljevic [Wed, 12 Sep 2018 20:53:06 +0000 (22:53 +0200)]
gnu: rust@1.19.0: Remove superfluous install-file call.

* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Remove
superfluous install-file call.

5 years agognu: rust@1.19.0: Install rustdoc.
Danny Milosavljevic [Wed, 12 Sep 2018 20:52:08 +0000 (22:52 +0200)]
gnu: rust@1.19.0: Install rustdoc.

* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[install]: Install
rustdoc.

5 years agognu: rust@1.19.0: Use match-lambda directly.
Danny Milosavljevic [Wed, 12 Sep 2018 15:41:31 +0000 (17:41 +0200)]
gnu: rust@1.19.0: Use match-lambda directly.

Follow-up to 3159ef7c99c646b78b04cedb1bd3525c301ef978.

* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Use
match-lambda directly.

5 years agognu: gnurl: Update to 7.61.1.
Nils Gillmann [Wed, 12 Sep 2018 13:56:08 +0000 (13:56 +0000)]
gnu: gnurl: Update to 7.61.1.

* gnu/packages/gnunet.scm (gnurl): Update to 7.61.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
5 years agognu: Zsh: Remove workaround required for Zsh 5.6.
Leo Famulari [Wed, 12 Sep 2018 19:17:45 +0000 (15:17 -0400)]
gnu: Zsh: Remove workaround required for Zsh 5.6.

This is a followup to commit 5a5d3e356311620df253d7c213c1bda79cd20128.

* gnu/packages/shells.scm (zsh)[arguments]: Remove substitutions in 'patch-test'
phase.

5 years agognu: emacs-hl-todo: Update to 1.9.0.
Pierre Neidhardt [Wed, 12 Sep 2018 17:50:41 +0000 (19:50 +0200)]
gnu: emacs-hl-todo: Update to 1.9.0.

* gnu/packages/emacs.scm (emacs-hl-todo): Update to 1.9.0.

5 years agognu: python-scikit-learn: Update to 0.19.2.
Ricardo Wurmus [Wed, 12 Sep 2018 17:04:02 +0000 (19:04 +0200)]
gnu: python-scikit-learn: Update to 0.19.2.

* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.19.2.
[source]: Fetch from git.
[arguments]: Run tests before installation; replace "check" phase, add
"build-ext" phase; delete "reset-gzip-timestamps" phase.
[native-inputs]: Add python-pytest and python-pandas; remove python-nose.

5 years agognu: Add emacs-blimp.
Pierre Neidhardt [Wed, 12 Sep 2018 13:45:38 +0000 (15:45 +0200)]
gnu: Add emacs-blimp.

* gnu/packages/emacs.scm (emacs-blimp): New variable.

5 years agognu: Add emacs-org-web-tools.
Pierre Neidhardt [Wed, 12 Sep 2018 13:44:33 +0000 (15:44 +0200)]
gnu: Add emacs-org-web-tools.

* gnu/packages/emacs.scm (emacs-org-web-tools): New variable.

5 years agognu: Add emacs-youtube-dl.
Pierre Neidhardt [Wed, 12 Sep 2018 13:44:07 +0000 (15:44 +0200)]
gnu: Add emacs-youtube-dl.

* gnu/packages/emacs.scm (emacs-youtube-dl): New variable.

5 years agognu: libfilezilla: Update to 0.13.1.
Tobias Geerinckx-Rice [Wed, 12 Sep 2018 13:26:21 +0000 (15:26 +0200)]
gnu: libfilezilla: Update to 0.13.1.

* gnu/packages/ftp.scm (libfilezilla): Update to 0.13.1.

5 years agognu: sg3-utils: Update to 1.43.
Tobias Geerinckx-Rice [Wed, 12 Sep 2018 14:08:34 +0000 (16:08 +0200)]
gnu: sg3-utils: Update to 1.43.

* gnu/packages/scsi.scm (sg3-utils): Update to 1.43.
[license]: Add bsd-2.

5 years agognu: syslinux: Use HTTPS home page.
Tobias Geerinckx-Rice [Tue, 11 Sep 2018 20:08:16 +0000 (22:08 +0200)]
gnu: syslinux: Use HTTPS home page.

* gnu/packages/bootloaders.scm (syslinux)[home-page]: Use HTTPS.

5 years agognu: syslinux: Use INVOKE.
Tobias Geerinckx-Rice [Tue, 11 Sep 2018 20:06:42 +0000 (22:06 +0200)]
gnu: syslinux: Use INVOKE.

* gnu/packages/bootloaders.scm (syslinux)[arguments]: Substitute INVOKE
for SYSTEM*.

5 years agognu: zsh: Update to 5.6.1.
Tobias Geerinckx-Rice [Tue, 11 Sep 2018 19:58:34 +0000 (21:58 +0200)]
gnu: zsh: Update to 5.6.1.

* gnu/packages/shells.scm (zsh): Update to 5.6.1.

5 years agognu: zsh: Use HTTPS.
Tobias Geerinckx-Rice [Tue, 11 Sep 2018 19:59:38 +0000 (21:59 +0200)]
gnu: zsh: Use HTTPS.

* gnu/packages/shells.scm (zsh)[source, home-page]: Use HTTPS.

5 years agognu: Add perl-mock-config.
Tobias Geerinckx-Rice [Tue, 11 Sep 2018 18:23:29 +0000 (20:23 +0200)]
gnu: Add perl-mock-config.

* gnu/packages/perl-check.scm (perl-mock-config): New public variable.

5 years agognu: perl-moosex-getopt: Update to 0.73.
Efraim Flashner [Wed, 12 Sep 2018 06:53:55 +0000 (09:53 +0300)]
gnu: perl-moosex-getopt: Update to 0.73.

* gnu/packages/perl.scm (perl-moosex-getopt): Update to 0.73.
[native-inputs]: Add perl-module-build-tiny, perl-path-tiny,
perl-test-needs.

5 years agonetsurf: Register patch.
Eric Bavier [Tue, 11 Sep 2018 20:56:57 +0000 (15:56 -0500)]
netsurf: Register patch.

Follow-up to f9e140a243b6d6b5d28bd0813b69604562a39653.

* gnu/local.mk (dist_patch_DATA): Add netsurf-message-timestamp.patch.

5 years agompi: Factorize openmpi setup build phase.
Eric Bavier [Thu, 16 Aug 2018 20:47:41 +0000 (15:47 -0500)]
mpi: Factorize openmpi setup build phase.

* gnu/packages/mpi.scm (%openmpi-setup): New variable.
* gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi)
(superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental)
(sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases.

5 years agofont-fantasque-sans: Upgrade to 1.7.2.
Eric Bavier [Sat, 8 Sep 2018 03:09:32 +0000 (22:09 -0500)]
font-fantasque-sans: Upgrade to 1.7.2.

* gnu/packages/fonts.scm (font-fantasque-sans): Upgrade to 1.7.2.
[native-inputs]: Add zip.
[arguments]: Add 'xrange->range phase for python3 compatibility.  Adjust
install phase to work with newly generated font variants.

5 years agognu: emacs-helm: Update to 3.0.
Pierre Neidhardt [Tue, 11 Sep 2018 21:47:57 +0000 (23:47 +0200)]
gnu: emacs-helm: Update to 3.0.

* gnu/packages/emacs.scm (emacs-helm): Update to 3.0.

5 years agognu: Add emacs-hackernews.
Pierre Neidhardt [Tue, 11 Sep 2018 21:45:06 +0000 (23:45 +0200)]
gnu: Add emacs-hackernews.

* gnu/packages/emacs.scm (emacs-hackernews): New variable.

5 years agognu: emacs-evil-collection: Update to 20180911.
Pierre Neidhardt [Tue, 11 Sep 2018 21:44:40 +0000 (23:44 +0200)]
gnu: emacs-evil-collection: Update to 20180911.

* gnu/packages/emacs.scm (emacs-evil-collection): Update to 20180911.

5 years agognu: emacs-magit-todos: Update to 1.1.
Pierre Neidhardt [Tue, 11 Sep 2018 21:34:31 +0000 (23:34 +0200)]
gnu: emacs-magit-todos: Update to 1.1.

* gnu/packages/emacs.scm (emacs-magit-todos): Update to 1.1.

5 years agognu: emacs-helm-system-packages: Update to 1.10.1.
Pierre Neidhardt [Tue, 11 Sep 2018 21:34:12 +0000 (23:34 +0200)]
gnu: emacs-helm-system-packages: Update to 1.10.1.

* gnu/packages/emacs.scm (emacs-helm-system-packages): Update to 1.10.1.

5 years agoguix: Do not close current-error-port.
Ricardo Wurmus [Tue, 11 Sep 2018 21:17:54 +0000 (23:17 +0200)]
guix: Do not close current-error-port.

Reported-by: Ludovic Courtès <ludo@gnu.org>.
* guix/scripts/build.scm (guix-build),
guix/scripts/package.scm (guix-package): Duplicate port before handing it to
build-output-port.

5 years agoui: Do not filter hash mismatch lines.
Ricardo Wurmus [Tue, 11 Sep 2018 20:16:24 +0000 (22:16 +0200)]
ui: Do not filter hash mismatch lines.

Reported by Pjotr Prins <pjotr.public12@thebird.nl>.

* guix/ui.scm (build-output-port): Add pattern for hash mismatch error; be
more careful with error messages in verbose mode.

5 years agognu: mes: Oops, use mirror://gnu download url.
Jan Nieuwenhuizen [Tue, 11 Sep 2018 20:29:39 +0000 (22:29 +0200)]
gnu: mes: Oops, use mirror://gnu download url.

* gnu/packages/mes.scm (mes): Oops, use mirror://gnu download url.

5 years agognu: snakemake: Update home page.
Tobias Geerinckx-Rice [Tue, 11 Sep 2018 19:11:36 +0000 (21:11 +0200)]
gnu: snakemake: Update home page.

* gnu/packages/python.scm (snakemake)[home-page]: Update.

5 years agognu: snakemake: Update to 5.2.2.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 18:57:30 +0000 (20:57 +0200)]
gnu: snakemake: Update to 5.2.2.

* gnu/packages/python.scm (snakemake): Update to 5.2.2.

5 years agognu: obnam: Add deprecation warning.
Tobias Geerinckx-Rice [Mon, 20 Aug 2018 15:09:10 +0000 (17:09 +0200)]
gnu: obnam: Add deprecation warning.

* gnu/packages/backup.scm (obnam)[synopsis, description]: Note its
retirement.

5 years agognu: unbound: Update to 1.8.0.
Tobias Geerinckx-Rice [Tue, 11 Sep 2018 13:53:11 +0000 (15:53 +0200)]
gnu: unbound: Update to 1.8.0.

* gnu/packages/dns.scm (unbound): Update to 1.8.0.

5 years agognu: perl-dbd-mysql: Update to 4.047.
Tobias Geerinckx-Rice [Tue, 11 Sep 2018 16:31:55 +0000 (18:31 +0200)]
gnu: perl-dbd-mysql: Update to 4.047.

* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.047.
[arguments]: Add 'skip-library-detection' phase.

5 years agognu: libreoffice: Update to 6.1.0.3.
Jonathan Brielmaier [Tue, 11 Sep 2018 05:59:11 +0000 (07:59 +0200)]
gnu: libreoffice: Update to 6.1.0.3.

* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.0.3.
[source]: Correct indenting.
[inputs]: Add libnumbertext and python-lxml.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: Add libnumbertext.
Jonathan Brielmaier [Tue, 11 Sep 2018 05:58:36 +0000 (07:58 +0200)]
gnu: Add libnumbertext.

* gnu/packages/libreoffice.scm (libnumbertext): New public variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: arpack-ng-openmpi: Fix build.
Paul Garlick [Tue, 11 Sep 2018 08:38:39 +0000 (09:38 +0100)]
gnu: arpack-ng-openmpi: Fix build.

* gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Add
'set-test-environment phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: Add emacs-irony-mode.
Tim Gesthuizen [Thu, 30 Aug 2018 15:39:57 +0000 (17:39 +0200)]
gnu: Add emacs-irony-mode.

* gnu/packages/emacs.scm (emacs-irony-mode): New variable.
(emacs-irony-mode-server): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: jupyter-guile-kernel: Add dependencies to the search path.
Ludovic Courtès [Tue, 11 Sep 2018 13:10:46 +0000 (15:10 +0200)]
gnu: jupyter-guile-kernel: Add dependencies to the search path.

This allows:

  guix environment --ad-hoc jupyter jupyter-guile-kernel \
    -- jupyter notebook

to work out-of-the-box.

* gnu/packages/guile.scm (jupyter-guile-kernel)[arguments]: In
'install-kernel' phase, add '-L' and '-C' flags to 'kernel.json'.
[propagated-inputs]: Remove.
[inputs]: Add GUILE-JSON and GUILE-SIMPLE-ZMQ.

5 years agognu: guile-simple-zmq, jupyter-guile-kernel: Update to 5bb66a0 and a7db924.
Ludovic Courtès [Tue, 11 Sep 2018 10:00:26 +0000 (12:00 +0200)]
gnu: guile-simple-zmq, jupyter-guile-kernel: Update to 5bb66a0 and a7db924.

* gnu/packages/guile.scm (guile-simple-zmq): Update to 5bb66a0.
(jupyter-guile-kernel): Update to a7db924.

5 years agognu: Add r-svgui.
Mădălin Ionel Patrașcu [Sat, 8 Sep 2018 20:54:58 +0000 (22:54 +0200)]
gnu: Add r-svgui.

* gnu/packages/cran.scm (r-svgui): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
5 years agognu: spice: Update to 0.14.1 [fixes CVE-2018-10873].
Marius Bakke [Mon, 10 Sep 2018 23:58:06 +0000 (01:58 +0200)]
gnu: spice: Update to 0.14.1 [fixes CVE-2018-10873].

* gnu/packages/spice.scm (spice): Update to 0.14.1.
[source](uri): Update to new "spice-server" subdirectory.
[native-inputs]: Add GLIB-NETWORKING and GSETTINGS-DESKTOP-SCHEMAS.
[arguments]: Remove configure-flag which is now off even when celt is
available.  Add phase to set $SSL_CERT_FILE.

5 years agognu: usbredir: Update to 0.8.0.
Marius Bakke [Mon, 10 Sep 2018 23:50:40 +0000 (01:50 +0200)]
gnu: usbredir: Update to 0.8.0.

* gnu/packages/spice.scm (usbredir): Update to 0.8.0.
[source]: Use URL-FETCH.
[native-inputs]: Remove AUTOCONF, AUTOMAKE and LIBTOOL.
[arguments]: Remove.

5 years agognu: syncthing: Update to 0.14.50.
Leo Famulari [Tue, 7 Aug 2018 17:34:20 +0000 (13:34 -0400)]
gnu: syncthing: Update to 0.14.50.

* gnu/packages/syncthing.scm (syncthing): Update to 0.14.50.

5 years agognu: go-github-com-syncthing-notify: Update to 0.0.0-2.b76b458.
Leo Famulari [Sun, 2 Sep 2018 01:10:36 +0000 (21:10 -0400)]
gnu: go-github-com-syncthing-notify: Update to 0.0.0-2.b76b458.

* gnu/packages/syncthing.scm (go-github-com-syncthing-notify): Update to
0.0.0-2.b76b458.

5 years agognu: VLC: Update to 3.0.4.
Leo Famulari [Mon, 10 Sep 2018 23:24:31 +0000 (19:24 -0400)]
gnu: VLC: Update to 3.0.4.

* gnu/packages/video.scm (vlc): Update to 3.0.4.

5 years agognu: git: Update to 2.19.0.
Leo Famulari [Mon, 10 Sep 2018 22:39:28 +0000 (18:39 -0400)]
gnu: git: Update to 2.19.0.

* gnu/packages/version-control.scm (git): Update to 2.19.0.
(cgit)[inputs]: Use the source of Git 2.18.0.

5 years agoprofiles: Correctly deal with etc/ being a relative symlink.
Ludovic Courtès [Mon, 10 Sep 2018 21:37:48 +0000 (23:37 +0200)]
profiles: Correctly deal with etc/ being a relative symlink.

Fixes <https://bugs.gnu.org/32686>.
Reported by Oleg Pykhalov <go.wigust@gmail.com>.

* guix/build/profiles.scm (ensure-writable-directory): Add #:symlink.
[absolute?]: New procedure.
[unsymlink]: Use it to determine how to resolve readlink's result.
(build-profile): Pass SYMLINK to 'ensure-writable-directory'.
* tests/profiles.scm ("profile-derivation when etc/ is a relative symlink"):
New test.

5 years agognu: Add r-abd.
pimi [Wed, 29 Aug 2018 08:36:56 +0000 (10:36 +0200)]
gnu: Add r-abd.

* gnu/packages/cran.scm (r-abd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: Add r-mosaic.
pimi [Wed, 29 Aug 2018 08:32:59 +0000 (10:32 +0200)]
gnu: Add r-mosaic.

* gnu/packages/cran.scm (r-mosaic): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: Add r-mosaicdata.
pimi [Wed, 29 Aug 2018 08:28:15 +0000 (10:28 +0200)]
gnu: Add r-mosaicdata.

* gnu/packages/cran.scm (r-mosaicdata): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: guitarix: Update to 0.37.3.
Ricardo Wurmus [Mon, 10 Sep 2018 21:57:41 +0000 (23:57 +0200)]
gnu: guitarix: Update to 0.37.3.

* gnu/packages/audio.scm (guitarix): Update to 0.37.3.
[inputs]: Add curl.

5 years agognu: guitarix-lv2: Use correct configure flag.
Thorsten Wilms [Mon, 10 Sep 2018 21:56:11 +0000 (23:56 +0200)]
gnu: guitarix-lv2: Use correct configure flag.

* gnu/packages/audio.scm (guitarix-lv2)[arguments]: Change configure flag.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
5 years agognu: kakoune: Use HTTPS home page.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 18:47:05 +0000 (20:47 +0200)]
gnu: kakoune: Use HTTPS home page.

* gnu/packages/text-editors.scm (kakoune)[home-page]: Use HTTPS.

5 years agognu: mcrl2: Use HTTPS home page.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 20:42:48 +0000 (22:42 +0200)]
gnu: mcrl2: Use HTTPS home page.

* gnu/packages/maths.scm (mcrl2)[home-page]: Use HTTPS.

5 years agognu: tor: Update to 0.3.4.8.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 20:53:28 +0000 (22:53 +0200)]
gnu: tor: Update to 0.3.4.8.

* gnu/packages/tor.scm (tor): Update to 0.3.4.8.

5 years agognu: kakoune: Update to 2018.09.04.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 18:47:21 +0000 (20:47 +0200)]
gnu: kakoune: Update to 2018.09.04.

* gnu/packages/text-editors.scm (kakoune): Update to 2018.09.04.

5 years agognu: python-binaryornot: Update to 0.4.4.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 19:00:20 +0000 (21:00 +0200)]
gnu: python-binaryornot: Update to 0.4.4.

* gnu/packages/python.scm (python-binaryornot): Update to 0.4.4.

5 years agognu: python-parse: Update to 1.8.4.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 19:30:28 +0000 (21:30 +0200)]
gnu: python-parse: Update to 1.8.4.

* gnu/packages/python.scm (python-parse): Update to 1.8.4.

5 years agognu: python-parse: Mark up description.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 19:33:17 +0000 (21:33 +0200)]
gnu: python-parse: Mark up description.

* gnu/packages/python.scm (python-parse)[description]: Use @code{}.

5 years agognu: python-jedi: Update to 0.12.1.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 19:48:05 +0000 (21:48 +0200)]
gnu: python-jedi: Update to 0.12.1.

* gnu/packages/python.scm (python-jedi): Update to 0.12.1.
[synopsis, description]: Adjust to expanded functionality.

5 years agognu: python-parso: Update to 0.3.1.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 19:47:32 +0000 (21:47 +0200)]
gnu: python-parso: Update to 0.3.1.

* gnu/packages/python.scm (python-parso): Update to 0.3.1.

5 years agognu: qtractor: Update to 0.9.2.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 20:13:07 +0000 (22:13 +0200)]
gnu: qtractor: Update to 0.9.2.

* gnu/packages/music.scm (qtractor): Update to 0.9.2.
[arguments]: Remove obsolete Qt 5.11 workaround.

5 years agoAdjust all users of (gnu packages ldc) to use (gnu packages dlang).
Leo Famulari [Mon, 10 Sep 2018 19:42:07 +0000 (15:42 -0400)]
Adjust all users of (gnu packages ldc) to use (gnu packages dlang).

This is a followup to commit 98d6543f86d01486c2f6e808eedd97c601ba3e7a.

* gnu/packages/bioinformatics.scm, guix/build-system/dub.scm: Adjust
accordingly.

5 years agognu: Add libabigail.
Marius Bakke [Sun, 9 Sep 2018 09:22:29 +0000 (11:22 +0200)]
gnu: Add libabigail.

* gnu/packages/elf.scm (libabigail): New public variable.

5 years agognu: python-debian: Update home page.
Marius Bakke [Mon, 10 Sep 2018 14:38:28 +0000 (16:38 +0200)]
gnu: python-debian: Update home page.

* gnu/packages/python.scm (python-debian)[home-page]: Set to source
repository.

5 years agognu: python-libarchive-c: Update to 2.8.
Marius Bakke [Mon, 10 Sep 2018 14:32:39 +0000 (16:32 +0200)]
gnu: python-libarchive-c: Update to 2.8.

* gnu/packages/python.scm (python-libarchive-c): Update to 2.8.
[arguments]: Replace 'check' phase.
[native-inputs]: Add PYTHON-MOCK and PYTHON-PYTEST.

5 years agognu: python-tlsh: Update to 3.4.5.
Marius Bakke [Mon, 10 Sep 2018 14:15:33 +0000 (16:15 +0200)]
gnu: python-tlsh: Update to 3.4.5.

* gnu/packages/python.scm (python-tlsh): Update to 3.4.5.

5 years agognu: python-cryptography: Update to 2.3.1.
Marius Bakke [Sun, 9 Sep 2018 23:14:25 +0000 (01:14 +0200)]
gnu: python-cryptography: Update to 2.3.1.

* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.3.1.

5 years agognu: cloc: Update source hash.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 18:11:37 +0000 (20:11 +0200)]
gnu: cloc: Update source hash.

The upstream tarball was modified in place. The only changes are:

  --- /gnu/store/5v39h6zjs33hj5dm2yggz5qk0mva00bs-cloc-1.78.tar.gz
  +++ /gnu/store/pm5ghks76vv6awv3969yvi7qxqfnfs1l-cloc-1.78.tar.gz
  ├── filetype from file(1)
  │ @@ -1 +1 @@
  │ -gzip compressed data, last modified: Fri Sep  7 18:22:49 2018, from Unix
  │ +gzip compressed data, last modified: Sat Sep  8 14:09:43 2018, from Unix
  │   --- 5v39h6zjs33hj5dm2yggz5qk0mva00bs-cloc-1.78.tar
  ├── +++ pm5ghks76vv6awv3969yvi7qxqfnfs1l-cloc-1.78.tar
  │ ├── file list
  │ │ @@ -1,13 +1,13 @@
  │ │  -rwxrwxr-x 0 al (1000) al (1000) 545021 2018-09-07 18:21:22 cloc-1.78/cloc
  │ │  -rwxrwxr-x 0 al (1000) al (1000)   1818 2018-09-07 18:21:22 cloc-1.78/sqlite_formatter
  │ │ -drwxrwxr-x 0 al (1000) al (1000)      0 2018-09-07 18:21:22 cloc-1.78/Unix/
  │ │ --rwxrwxr-x 0 al (1000) al (1000) 498571 2018-09-07 18:21:22 cloc-1.78/Unix/cloc
  │ │ +drwxrwxr-x 0 al (1000) al (1000)      0 2018-09-08 14:09:23 cloc-1.78/Unix/
  │ │ +-rwxrwxr-x 0 al (1000) al (1000) 498537 2018-09-08 14:09:22 cloc-1.78/Unix/cloc
  │ │  -rwxrwxr-x 0 al (1000) al (1000)  32382 2018-09-07 18:21:22 cloc-1.78/Unix/t/00_C.t
  │ │  -rwxrwxr-x 0 al (1000) al (1000)  12614 2018-09-07 18:21:22 cloc-1.78/Unix/t/01_opts.t
  │ │  -rw-rw-r-- 0 al (1000) al (1000)    862 2018-09-07 18:21:22 cloc-1.78/Unix/README
  │ ├── cloc-1.78/Unix/cloc
  │ │ @@ -1,8 +1,7 @@
  │ │ -#!/usr/local/perl/5.28.0/bin/perl
  │ │  #!/usr/bin/env perl

* gnu/packages/code.scm (cloc)[source]: Update sha256 hash.

5 years agognu: nano: Update to 3.0.
Leo Famulari [Mon, 10 Sep 2018 17:53:21 +0000 (13:53 -0400)]
gnu: nano: Update to 3.0.

* gnu/packages/nano.scm (nano): Update to 3.0.

5 years agognu: linux-libre: Update to 4.18.7.
Mark H Weaver [Mon, 10 Sep 2018 17:25:54 +0000 (13:25 -0400)]
gnu: linux-libre: Update to 4.18.7.

* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.7.
(%linux-libre-hash): Update hash.

5 years agognu: linux-libre@4.14: Update to 4.14.69.
Mark H Weaver [Mon, 10 Sep 2018 17:24:01 +0000 (13:24 -0400)]
gnu: linux-libre@4.14: Update to 4.14.69.

* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.69.
(%linux-libre-4.14-hash): Update hash.

5 years agognu: linux-libre@4.9: Update to 4.9.126.
Mark H Weaver [Mon, 10 Sep 2018 17:23:20 +0000 (13:23 -0400)]
gnu: linux-libre@4.9: Update to 4.9.126.

* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.126.

5 years agognu: linux-libre@4.4: Update to 4.4.155.
Mark H Weaver [Mon, 10 Sep 2018 17:22:35 +0000 (13:22 -0400)]
gnu: linux-libre@4.4: Update to 4.4.155.

* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.155.

5 years agognu: gnome-mpv: Update to 0.15.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 14:51:02 +0000 (16:51 +0200)]
gnu: gnome-mpv: Update to 0.15.

* gnu/packages/video.scm (gnome-mpv): Update to 0.15.

5 years agognu: fortify-headers: Update to 1.0.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 14:56:40 +0000 (16:56 +0200)]
gnu: fortify-headers: Update to 1.0.

* gnu/packages/suckless.scm (fortify-headers): Update to 1.0.

5 years agognu: python-genshi: Update to 0.7.1.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 16:01:51 +0000 (18:01 +0200)]
gnu: python-genshi: Update to 0.7.1.

* gnu/packages/python-web.scm (python-genshi): Update to 0.7.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME. Remove patches.
* gnu/packages/patches/python-genshi-add-support-for-python-3.4-AST.patch,
gnu/packages/patches/python-genshi-buildable-on-python-2.7.patch,
gnu/packages/patches/python-genshi-disable-speedups-on-python-3.3.patch,
gnu/packages/patches/python-genshi-fix-tests-on-python-3.5.patch,
gnu/packages/patches/python-genshi-isstring-helper.patch,
gnu/packages/patches/python-genshi-stripping-of-unsafe-script-tags.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.

5 years agognu: python-sockjs-tornado: Update to 1.0.5.
Tobias Geerinckx-Rice [Mon, 10 Sep 2018 16:14:10 +0000 (18:14 +0200)]
gnu: python-sockjs-tornado: Update to 1.0.5.

* gnu/packages/python-web.scm (python-sockjs-tornado): Update to 1.0.5.