jackhill/guix/guix.git
7 years agognu: gsl: Disable failing tests on i686.
Ludovic Courtès [Wed, 5 Oct 2016 12:52:47 +0000 (14:52 +0200)]
gnu: gsl: Disable failing tests on i686.

* gnu/packages/patches/gsl-test-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (gsl)[source](patches): New field.

7 years agognu: git: Update to 2.10.1.
Leo Famulari [Wed, 5 Oct 2016 05:52:20 +0000 (01:52 -0400)]
gnu: git: Update to 2.10.1.

* gnu/packages/version-control.scm (git): Update to 2.10.1.

7 years agognu: guix: Honor the user's 'GUILE_LOAD_PATH'.
Ludovic Courtès [Tue, 4 Oct 2016 20:40:46 +0000 (22:40 +0200)]
gnu: guix: Honor the user's 'GUILE_LOAD_PATH'.

* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Use
'prefix' when wrapping 'guix' for 'GUILE_LOAD_PATH'.

7 years agomapped-devices: Properly open RAID devices.
Ludovic Courtès [Tue, 4 Oct 2016 17:48:51 +0000 (19:48 +0200)]
mapped-devices: Properly open RAID devices.

This fixes a type error introduced in
7f8ad82bf23b032ad6bd85bb1daa87cc83de509c, given that SOURCES is a list.

* gnu/system/mapped-devices.scm (open-raid-device): Add 'apply'
invocation.

7 years agognu: Add GoAccess.
Ludovic Courtès [Tue, 4 Oct 2016 15:43:01 +0000 (17:43 +0200)]
gnu: Add GoAccess.

* gnu/packages/web.scm (goaccess): New variable.

7 years agognu: pies: Update to 1.3.
Ludovic Courtès [Tue, 4 Oct 2016 14:36:33 +0000 (16:36 +0200)]
gnu: pies: Update to 1.3.

* gnu/packages/admin.scm (pies): Update to 1.3.
[arguments]: New field.

7 years agognu: global: Update to 6.5.5.
Ludovic Courtès [Tue, 4 Oct 2016 14:28:17 +0000 (16:28 +0200)]
gnu: global: Update to 6.5.5.

* gnu/packages/code.scm (global): Update to 6.5.5.

7 years agognu: gsl: Update to 2.2.1.
Ludovic Courtès [Tue, 4 Oct 2016 14:27:35 +0000 (16:27 +0200)]
gnu: gsl: Update to 2.2.1.

* gnu/packages/maths.scm (gsl): Update to 2.2.1.

7 years agognu: direvent: Update to 5.1.
Ludovic Courtès [Tue, 4 Oct 2016 14:09:04 +0000 (16:09 +0200)]
gnu: direvent: Update to 5.1.

* gnu/packages/admin.scm (direvent): Update to 5.1.
[arguments]: Augment 'patch-/bin/sh' phase to patch 'progman.c' and
'testsuite'.

7 years agognu: gnu-c-manual: Update to 0.2.5.
Ludovic Courtès [Tue, 4 Oct 2016 14:02:36 +0000 (16:02 +0200)]
gnu: gnu-c-manual: Update to 0.2.5.

* gnu/packages/gcc.scm (gnu-c-manual): Update to 0.2.5.

7 years agognu: rush: Update to 1.8.
Ludovic Courtès [Tue, 4 Oct 2016 13:55:21 +0000 (15:55 +0200)]
gnu: rush: Update to 1.8.

* gnu/packages/rush.scm (rush): Update to 1.8.
[source]: Remove 'patches'.
* gnu/packages/patches/cpio-gets-undeclared.patch,
gnu/packages/patches/rush-CVE-2013-6889.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.

7 years agoSet Emacs config variable sentence-end-double-space.
Hartmut Goebel [Tue, 4 Oct 2016 11:15:12 +0000 (13:15 +0200)]
Set Emacs config variable sentence-end-double-space.

Users using a non-English environment may have set this to `nil´, which
leads to fill-paragraph removing the second space.

* .dir-locals.el: Set sentence-end-double-space to true.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
7 years agognu: cryptsetup: Update to 1.7.2.
Leo Famulari [Mon, 3 Oct 2016 05:44:27 +0000 (01:44 -0400)]
gnu: cryptsetup: Update to 1.7.2.

* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.2.
[source]: Use kernel mirror.
[home-page]: Update URL.

7 years agognu: metabat: Update to 0.32.4-1.cbdca756.
Ben Woodcroft [Tue, 4 Oct 2016 11:58:28 +0000 (21:58 +1000)]
gnu: metabat: Update to 0.32.4-1.cbdca756.

* gnu/packages/bioinformatics.scm (metabat): Update to 0.32.4-1.cbdca756.
* gnu/packages/patches/metabat-remove-compilation-date.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

7 years agognu: fish: Do not use the bundled PCRE2.
Ludovic Courtès [Tue, 4 Oct 2016 09:26:21 +0000 (11:26 +0200)]
gnu: fish: Do not use the bundled PCRE2.

* gnu/packages/shells.scm (fish)[inputs]: Add PCRE2.

7 years agognu: fish: Add input bc.
Arun Isaac [Mon, 19 Sep 2016 20:05:17 +0000 (01:35 +0530)]
gnu: fish: Add input bc.

Fixes <http://bugs.gnu.org/24433>.

* gnu/packages/shells.scm (fish)[inputs]: Add bc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
7 years agognu: warzone2100: Update to 3.2.1.
Ricardo Wurmus [Tue, 4 Oct 2016 08:17:56 +0000 (10:17 +0200)]
gnu: warzone2100: Update to 3.2.1.

* gnu/packages/games.scm (warzone2100): Update to 3.2.1.
[arguments]: Remove phase "set-sdl-paths", add phase
"link-tests-with-qt", add phase "remove-reference-to-missing-file".
[inputs]: Replace "qt-4" with "qt", replace "sdl-union" with
"sdl2", add "openssl".

7 years agognu: ruby-nokogumbo: Move "build-gemspec" phase after "unpack".
Ricardo Wurmus [Tue, 4 Oct 2016 05:57:27 +0000 (07:57 +0200)]
gnu: ruby-nokogumbo: Move "build-gemspec" phase after "unpack".

* gnu/packages/ruby.scm (ruby-nokogumbo)[arguments]: Move
"build-gemspec" phase after "unpack".

7 years agognu: python-pathlib: Disable tests.
Ricardo Wurmus [Mon, 3 Oct 2016 17:24:00 +0000 (19:24 +0200)]
gnu: python-pathlib: Disable tests.

* gnu/packages/python.scm (python-pathlib)[arguments]: Disable tests.

7 years agognu: ghmm: Run tests after install.
Ricardo Wurmus [Mon, 3 Oct 2016 17:12:08 +0000 (19:12 +0200)]
gnu: ghmm: Run tests after install.

* gnu/packages/machine-learning.scm (ghmm)[arguments]: Move "check"
phase after "install"; add phase "fix-PYTHONPATH".

7 years agognu: raincat: Add missing input.
Ricardo Wurmus [Tue, 4 Oct 2016 06:48:03 +0000 (08:48 +0200)]
gnu: raincat: Add missing input.

* gnu/packages/games.scm (raincat)[inputs]: Add freeglut.

7 years agognu: supertux: Update to 0.5.0.
Ricardo Wurmus [Tue, 4 Oct 2016 06:28:53 +0000 (08:28 +0200)]
gnu: supertux: Update to 0.5.0.

* gnu/packages/games.scm (supertux): Update to 0.5.0.
[arguments]: Add flag to disable static boost libraries.

7 years agognu: parallel: Update to 20160922.
Leo Famulari [Tue, 4 Oct 2016 03:44:01 +0000 (23:44 -0400)]
gnu: parallel: Update to 20160922.

* gnu/packages/parallel.scm (parallel): Update to 20160922.

7 years agognu: linux-libre: Update to 4.8.
Mark H Weaver [Mon, 3 Oct 2016 17:48:42 +0000 (13:48 -0400)]
gnu: linux-libre: Update to 4.8.

* gnu/packages/linux.scm (linux-libre): Update to 4.8.
* gnu/packages/linux-libre-4.7-x86_64.conf,
gnu/packages/linux-libre-4.7-i686.conf: Delete files.
* gnu/packages/linux-libre-4.8-x86_64.conf,
gnu/packages/linux-libre-4.8-i686.conf: New files.
* Makefile.am (KCONFIGS): Update accordingly.

7 years agognu: nss: Increase build timeout to 60 hours.
Mark H Weaver [Mon, 26 Sep 2016 07:49:59 +0000 (03:49 -0400)]
gnu: nss: Increase build timeout to 60 hours.

* gnu/packages/gnuzilla.scm (nss)[properties]: Increase build timeout to
60 hours.

7 years agognu: gnunet: Add inputs.
ng0 [Fri, 16 Sep 2016 13:28:01 +0000 (13:28 +0000)]
gnu: gnunet: Add inputs.

* gnu/packages/gnunet.scm (gnunet)[inputs]: Add perl, jansson, nss, gmp, bluez,
glib, libogg.
[native-inputs]: Move python-2 from here ...
[inputs]: ... to here.

Signed-off-by: Leo Famulari <leo@famulari.name>
7 years agolint: 'cve' checker reports the replacement's vulnerabilities.
Ludovic Courtès [Mon, 3 Oct 2016 21:30:49 +0000 (23:30 +0200)]
lint: 'cve' checker reports the replacement's vulnerabilities.

Before, 'guix lint -c cve' would report the vulnerabilities of the
original package while pretending they are the vulnerabilities of the
replacement.

* guix/scripts/lint.scm (check-vulnerabilities): Consider the package
replacement before calling 'package-vulnerabilities'.
* tests/lint.scm ("cve: vulnerability fixed in replacement version"):
New test.

7 years agognu: gctp: 'license' field now has a <license> value.
Ludovic Courtès [Mon, 3 Oct 2016 21:20:23 +0000 (23:20 +0200)]
gnu: gctp: 'license' field now has a <license> value.

* gnu/packages/maths.scm (gctp)[license]: Change to a <license> record.

7 years agognu: libgcrypt@1.7: Replacement now has an accurate 'version' field.
Ludovic Courtès [Mon, 3 Oct 2016 21:15:52 +0000 (23:15 +0200)]
gnu: libgcrypt@1.7: Replacement now has an accurate 'version' field.

* gnu/packages/gnupg.scm (libgcrypt-1.7.3)[version]: New field.

7 years agognu: openssl@1.0: Replacement now has an accurate 'version' field.
Ludovic Courtès [Mon, 3 Oct 2016 21:09:23 +0000 (23:09 +0200)]
gnu: openssl@1.0: Replacement now has an accurate 'version' field.

* gnu/packages/tls.scm (openssl-1.0.2j)[name, version]: New fields.

7 years agografts: Allow the replacement to have a different name.
Ludovic Courtès [Mon, 3 Oct 2016 21:02:46 +0000 (23:02 +0200)]
grafts: Allow the replacement to have a different name.

* guix/build/graft.scm (replace-store-references): REPLACEMENT is now
the full string, not just the hash.
(rewrite-directory)[hash-mapping](valid-suffix?): Remove.
(hash+suffix): Rename to...
(hash+rest): ... this.  Change to return the whole string as the second
element of the list.  Adjust 'match-lambda' expression accordingly;
check whether the string length of the origin and replacement match.
* tests/grafts.scm ("graft-derivation, grafted item uses a different
name"): New test.
* doc/guix.texi (Security Updates): Update sentence on the name/version
restriction.

7 years agognu: libarchive: Fix several security issues.
Leo Famulari [Sun, 2 Oct 2016 19:58:06 +0000 (15:58 -0400)]
gnu: libarchive: Fix several security issues.

* gnu/packages/backup.scm (libarchive)[replacement]: New field.
(libarchive/fixed): New variable.
* gnu/packages/patches/libarchive-7zip-heap-overflow.patch,
gnu/packages/patches/libarchive-fix-symlink-check.patch,
gnu/packages/patches/libarchive-fix-filesystem-attacks.patch,
gnu/packages/patches/libarchive-safe_fprintf-buffer-overflow.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.

7 years agognu: perl-dbd-mysql: Update to 4.037 [fixes CVE-2016-1246].
Leo Famulari [Mon, 3 Oct 2016 18:38:17 +0000 (14:38 -0400)]
gnu: perl-dbd-mysql: Update to 4.037 [fixes CVE-2016-1246].

* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.037.

7 years agotests: Adjust 'guix build -S' test for source-less packages.
Ludovic Courtès [Mon, 3 Oct 2016 13:24:21 +0000 (15:24 +0200)]
tests: Adjust 'guix build -S' test for source-less packages.

This is a followup to 8a54c0ec694ad6e22b155d167552b8fd0914e82d.

* tests/guix-build.sh: Allow 'guix build -S' to succeed with source-less
packages.  Check that the result is the empty string.

7 years agotests: ssh: Add Dropbear test.
Ludovic Courtès [Mon, 3 Oct 2016 13:18:51 +0000 (15:18 +0200)]
tests: ssh: Add Dropbear test.

* gnu/tests/ssh.scm (run-ssh-test): Try authenticating with
'userauth-none!' when 'userauth-password!' fails.
(%test-dropbear): New variable.

7 years agotests: ssh: Generalize.
Ludovic Courtès [Mon, 3 Oct 2016 13:14:46 +0000 (15:14 +0200)]
tests: ssh: Generalize.

* gnu/tests/ssh.scm (%openssh-os): Rename to...
(%base-os): ... this.
[services]: Remove 'openssh-service-type' instance.
(os-with-service): New procedure.
(run-openssh-test): Rename to...
(run-ssh-test): ... this.  Add 'ssh-service' and 'pid-file' parameters.
Use 'os-with-service' to add SSH-SERVICE to %BASE-OS.  Honor PID-FILE.
(%test-openssh): Adjust accordingly.

7 years agoservices: rottlog: Add Rottlog to the global profile.
Ludovic Courtès [Mon, 3 Oct 2016 12:48:01 +0000 (14:48 +0200)]
services: rottlog: Add Rottlog to the global profile.

* gnu/services/admin.scm (rottlog-service-type): Extend
PROFILE-SERVICE-TYPE.

7 years agoservices: rottlog: Improve default weekly rotations.
Ludovic Courtès [Mon, 3 Oct 2016 12:39:25 +0000 (14:39 +0200)]
services: rottlog: Improve default weekly rotations.

* gnu/services/admin.scm (%rotated-files): Add "/var/log/maillog".
(syslog-rotation-config): Change parameter to 'files'.  Return a
string-append gexp for all of FILES.
(simple-rotation-config): Remove unnecessary 'postrotate' and
'endscript'.
(%default-rotations): Adjust accordingly.

7 years agotests: Add 'openssh-service-type' test.
Ludovic Courtès [Sun, 2 Oct 2016 22:37:38 +0000 (00:37 +0200)]
tests: Add 'openssh-service-type' test.

* gnu/tests/ssh.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

7 years agoservices: openssh-service-type: Expose 'openssh-configuration'.
Ludovic Courtès [Sun, 2 Oct 2016 21:18:08 +0000 (23:18 +0200)]
services: openssh-service-type: Expose 'openssh-configuration'.

* gnu/services/ssh.scm (<openssh-configuration>): Add default values.
[pubkey-authentication?]: Rename to...
[public-key-authentication?]: ... this.
(openssh-service): Remove.
* doc/guix.texi (Networking Services): Adjust accordingly.

7 years agoservices: Add rottlog.
Jan Nieuwenhuizen [Wed, 7 Sep 2016 23:20:43 +0000 (01:20 +0200)]
services: Add rottlog.

* gnu/services/admin.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (Log Rotation): New node.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
7 years agognu: ghc-process: Replace reference to /bin/sh.
Ricardo Wurmus [Sat, 1 Oct 2016 15:02:32 +0000 (17:02 +0200)]
gnu: ghc-process: Replace reference to /bin/sh.

* gnu/packages/haskell.scm (ghc-process)[arguments]: Add phases
"patch-reference-to-/bin/sh" to replace reference to /bin/sh.

7 years agognu: Do not propagate inputs in haskell.scm.
Ricardo Wurmus [Sat, 1 Oct 2016 11:24:22 +0000 (13:24 +0200)]
gnu: Do not propagate inputs in haskell.scm.

* gnu/packages/haskell.scm
(ghc-streaming-commons)[propagated-inputs]: Move ghc-random...
[inputs]: ...to here; remove ghc-async, add ghc-directory, add
ghc-transformers; move ghc-quickcheck, ghc-hspec...
[native-inputs]: ...to here; add hspec-discover.

(ghc-test-framework)[propagated-inputs]: Move all from here...
[inputs]: ...to here; move ghc-hunit and ghc-quickcheck...
[native-inputs]: ...to here.

(ghc-attoparsec)[propagated-inputs]: Move ghc-scientific...
[inputs]: ...to here; move ghc-quickcheck, ghc-quickcheck-unicode,
ghc-test-framework, ghc-test-framework-quickcheck2, ghc-vector...
[native-inputs]: ...to here.

(ghc-zip-archive)[propagated-inputs]: Move all inputs from here...
[inputs]: ...to here; move ghc-hunit from here...
[native-inputs]: ...to here.

(ghc-network-uri)[inputs]: Add ghc-parsec; move ghc-hunit from here...
[native-inputs]: ...to here.
[propagated-inputs]: Remove.

(ghc-wai)[propagated-inputs]: Move all inputs from here...
[inputs]: ...to here; move ghc-quickcheck, ghc-hunit, and ghc-hspec from
here...
[native-inputs]: ...to here.  Add hspec-discover.

(ghc-wai-extra)[propagated-inputs]: Remove ghc-hspec and ghc-hunit; move
all other inputs from here...
[inputs]: ...to here.
[native-inputs]: Add hspec-discover, ghc-hspec, and ghc-hunit.

(ghc-resourcet, ghc-xss-sanitize, ghc-parsec, ghc-vector, ghc-http,
ghc-base-compat, ghc-base-orphans, ghc-word8)[inputs]: Move all inputs
from here...
[native-inputs]: ...to here.

(ghc-haddock-library, ghc-hspec-contrib, ghc-base-compat,
ghc-base-orphans, ghc-fast-logger, ghc-word8, ghc-aeson-qq,
ghc-logging-facade, ghc-mockery, ghc-yaml, ghc-hslua)[native-inputs]:
Add hspec-discover.

(ghc-fast-logger)[inputs]: Move ghc-hspec from here...
[native-inputs]: ...to here.

(ghc-data-default,
ghc-data-default-instances-base,
ghc-data-default-instances-containers,
ghc-data-default-instances-dlist,
ghc-haddock-api,
ghc-happy,
ghc-haskell-src-exts,
ghc-resourcet,
ghc-xss-sanitize,
ghc-sdl-mixer,
ghc-sdl-image,
ghc-glut,
ghc-gluraw,
ghc-opengl,
cpphs,
ghc-old-time,
ghc-data-default-instances-old-locale,
cabal-install,
ghc-x11,
ghc-x11-xft,
ghc-hashable,
ghc-test-framework-hunit,
ghc-test-framework,
ghc-tf-random,
ghc-transformers-base,
ghc-unix-time,
ghc-http-types,
ghc-iproute,
ghc-regex-base,
ghc-regex-posix,
ghc-regex-tdfa-rc,
ghc-parsers,
ghc-trifecta,
ghc-distributive,
ghc-comonad,
ghc-polyparse,
ghc-profunctors,
ghc-reducers,
ghc-xml,
ghc-exceptions,
ghc-temporary,
ghc-temporary-rc,
ghc-smallcheck,
ghc-tasty-ant-xml,
ghc-quickcheck-instances,
ghc-quickcheck,
ghc-case-insensitive,
ghc-chasingbottoms,
ghc-unordererd-containers,
ghc-uniplate,
ghc-ansi-wl-pprint,
ghc-parsec,
ghc-vector,
ghc-vector-binary-instances,
ghc-http,
ghc-hspec,
ghc-hspec-contrib,
ghc-hspec-core,
ghc-hspec-meta,
ghc-vault,
ghc-monad-control,
ghc-blaze-builder,
ghc-blaze-markup,
ghc-blaze-html,
ghc-async,
ghc-optparse-applicative,
ghc-charset,
ghc-void,
ghc-kan-extensions,
ghc-statevar,
ghc-lens,
ghc-cheapskate,
ghc-semigroupoids,
ghc-contrvariant,
ghc-semigroups,
ghc-free,
ghc-adjunctions,
ghc-fast-logger,
ghc-doctest,
ghc-lifted-base,
ghc-tasty-quickcheck,
ghc-tasty-golden,
ghc-tasty,
ghc-cookie,
ghc-scientific,
ghc-aeson,
ghc-wai-logger,
ghc-pandoc-types,
ghc-texmath,
ghc-regex-pcre-builtin,
ghc-highlighting-kate,
ghc-cmark,
ghc-enclosed-exceptions,
ghc-th-lift,
ghc-th-expand-syns,
ghc-th-reify-many,
ghc-th-orphans,
ghc-haskell-src-meta,
ghc-aeson-qq,
ghc-conduit,
ghc-mockery,
ghc-yaml,
ghc-filemanip,
ghc-juicypixels,
ghc-hslua,
ghc-mime-types,
ghc-http-client,
ghc-hourglass,
ghc-pem,
ghc-asn1-types,
ghc-asn1-encoding,
ghc-asn1-parse,
ghc-tasty-kat,
ghc-cryptonite,
ghc-x509,
ghc-x509-store,
ghc-x509-validation,
ghc-x509-system,
ghc-tls,
ghc-socks,
ghc-connection,
ghc-http-client-tls,
ghc-pandoc)[propagated-inputs]: Move inputs from here...
[inputs]: ...to here.

7 years agognu: r-plotly: Update to 4.5.2.
Ricardo Wurmus [Thu, 29 Sep 2016 15:11:57 +0000 (17:11 +0200)]
gnu: r-plotly: Update to 4.5.2.

* gnu/packages/statistics.scm (r-plotly): Update to 4.5.2.
[propagated-inputs]: Remove r-plyr; remove r-viridis; add r-dplyr; add
r-lazyeval; add r-purrr; add r-tibble; add r-viridislite.

7 years agognu: Add r-purrr.
Ricardo Wurmus [Thu, 29 Sep 2016 15:11:34 +0000 (17:11 +0200)]
gnu: Add r-purrr.

* gnu/packages/statistics.scm (r-purrr): New variable.

7 years agognu: Add r-viridislite.
Ricardo Wurmus [Thu, 29 Sep 2016 15:08:23 +0000 (17:08 +0200)]
gnu: Add r-viridislite.

* gnu/packages/statistics.scm (r-viridislite): New variable.

7 years agognu: libotf: Fix source URI.
Mark H Weaver [Sun, 2 Oct 2016 14:45:19 +0000 (10:45 -0400)]
gnu: libotf: Fix source URI.

* gnu/packages/fontutils.scm (libotf)[source]: Fix suorce URI.

7 years agognu: vsearch: Update to 2.1.2.
Ben Woodcroft [Sun, 2 Oct 2016 12:25:39 +0000 (22:25 +1000)]
gnu: vsearch: Update to 2.1.2.

* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.2.

7 years agognu: ffmpeg: Update to 3.1.4.
Efraim Flashner [Sun, 2 Oct 2016 08:38:32 +0000 (11:38 +0300)]
gnu: ffmpeg: Update to 3.1.4.

* gnu/packages/video.scm (ffmpeg): Update to 3.1.4.

7 years agognu: linux-libre: Update to 4.7.6.
Mark H Weaver [Sat, 1 Oct 2016 22:22:43 +0000 (18:22 -0400)]
gnu: linux-libre: Update to 4.7.6.

* gnu/packages/linux.scm (linux-libre): Update to 4.7.6.

7 years agognu: linux-libre@4.4: Update to 4.4.23.
Mark H Weaver [Sat, 1 Oct 2016 22:20:28 +0000 (18:20 -0400)]
gnu: linux-libre@4.4: Update to 4.4.23.

* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.23.

7 years agognu: guitarix: Update to 0.35.1.
Ricardo Wurmus [Sat, 1 Oct 2016 20:31:10 +0000 (22:31 +0200)]
gnu: guitarix: Update to 0.35.1.

* gnu/packages/audio.scm (guitarix): Update to 0.35.1.

7 years agognu: eigen: Update to 3.2.9.
Ricardo Wurmus [Sat, 1 Oct 2016 19:35:47 +0000 (21:35 +0200)]
gnu: eigen: Update to 3.2.9.

* gnu/packages/algebra.scm (eigen): Update to 3.2.9.

7 years agognu: julia: Update to 0.5.0.
Ricardo Wurmus [Sat, 24 Sep 2016 12:16:21 +0000 (14:16 +0200)]
gnu: julia: Update to 0.5.0.

* gnu/packages/julia.scm (libuv-julia): Update to commit
8d5131b6c1595920dd30644cd1435b4f344b46c8.
(libunwind-for-julia): New variable.
(julia): Update to 0.5.0.
[arguments]: Disable stripping of binaries; modify "prepare-deps" phase;
add "fix-llvm-flag" phase; add "set-home" phase; adjust
"hardcode-soname-map" phase; remove fix for "double-conversion" from
"fix-include-and-link-paths" phase; enable "repl" and "replcompletions"
tests; disable "backtrace", "compile", "replutil", and "cmdlineargs"
tests; remove USE_SYSTEM_RMATH flag; remove USE_SYSTEM_GRISU flag.
[inputs]: Replace "llvm-3.5" with "llvm"; replace "libunwind" with
"libunwind-for-julia"; remove "double-conversion"; remove "rmath-julia";
update "suitesparse" origin; replace "virtualenv" origin with
"python2-virtualenv".
[native-inputs]: Add "openssl".

7 years agognu: utf8proc: Update to 2.0.2.
Ricardo Wurmus [Sun, 25 Sep 2016 09:00:05 +0000 (11:00 +0200)]
gnu: utf8proc: Update to 2.0.2.

* gnu/packages/textutils.scm (utf8proc): Update to 2.0.2.

7 years agognu: gd: Fix CVE-2016-7568.
Leo Famulari [Thu, 29 Sep 2016 15:32:34 +0000 (11:32 -0400)]
gnu: gd: Fix CVE-2016-7568.

* gnu/packages/patches/gd-CVE-2016-7568.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.

7 years agognu: rpcbind-configuration: Rename pkg to nfs-utils
John Darrington [Sat, 1 Oct 2016 07:23:47 +0000 (09:23 +0200)]
gnu: rpcbind-configuration: Rename pkg to nfs-utils

* gnu/services/nfs.scm (<rpcbind-configuration>): "pkg" --> "nfs-utils"

7 years agognu: Add quickswitch-i3.
Ivan Vilata i Balaguer [Wed, 21 Sep 2016 09:19:20 +0000 (11:19 +0200)]
gnu: Add quickswitch-i3.

* gnu/packages/wm.scm (quickswitch-i3): New variable.
* gnu/packages/patches/quickswitch-fix-dmenu-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
7 years agognu: Add python-i3-py.
Ivan Vilata i Balaguer [Wed, 21 Sep 2016 09:19:07 +0000 (11:19 +0200)]
gnu: Add python-i3-py.

* gnu/packages/wm.scm (python-i3-py, python2-i3-py): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
7 years agognu: Add emacs-rudel.
ng0 [Tue, 27 Sep 2016 16:24:29 +0000 (16:24 +0000)]
gnu: Add emacs-rudel.

* gnu/packages/emacs.scm (emacs-rudel): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
7 years agognu: shroud: Wrap 'shroud' with 'GUILE_LOAD_COMPILED_PATH'.
宋文武 [Fri, 30 Sep 2016 12:19:15 +0000 (20:19 +0800)]
gnu: shroud: Wrap 'shroud' with 'GUILE_LOAD_COMPILED_PATH'.

* gnu/packages/password-utils.scm (shroud)[arguments]: New field.

7 years agognu: tmux: Update to 2.3.
Leo Famulari [Fri, 30 Sep 2016 22:57:29 +0000 (18:57 -0400)]
gnu: tmux: Update to 2.3.

* gnu/packages/tmux.scm (tmux): Update to 2.3.

7 years agognu: libreoffice: Update to 5.1.5.2.
Leo Famulari [Thu, 29 Sep 2016 21:45:03 +0000 (17:45 -0400)]
gnu: libreoffice: Update to 5.1.5.2.

* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.5.2.

7 years agobuild: Improve Guile 2.2 compatibility.
Taylan Ulrich Bayırlı/Kammer [Tue, 27 Sep 2016 20:34:06 +0000 (22:34 +0200)]
build: Improve Guile 2.2 compatibility.

* build-aux/compile-all.scm (compile-file*): Ensure loading of
  compilation related modules before going parallel.
* guix/build/pull.scm (build-guix): Ditto.

7 years agognu: xonsh: Remove bundled PLY.
Danny Milosavljevic [Thu, 29 Sep 2016 16:39:42 +0000 (12:39 -0400)]
gnu: xonsh: Remove bundled PLY.

* gnu/packages/shells.scm (xonsh)[source]: Add snippet to remove bundled
python-ply.
[inputs]: Add python-ply.

Signed-off-by: Leo Famulari <leo@famulari.name>
7 years agoservices: Add 'openssh-service'.
Julien Lepiller [Fri, 5 Aug 2016 13:20:15 +0000 (15:20 +0200)]
services: Add 'openssh-service'.

* gnu/packages/ssh.scm (openssh)[arguments]: Set sysconfdir to /etc/ssh.
* gnu/services/ssh.scm (<openssh-configuration>): New record type.
(%openssh-accounts): New variable.
(openssh-activation, openssh-config-file, openssh-shepherd-service)
(openssh-service): New procedures.
(openssh-service-type): New variable.
* doc/guix.texi (Networking Services): Document 'openssh-services'.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
7 years agognu: emacs: Build with m17n support.
Arun Isaac [Tue, 27 Sep 2016 17:17:22 +0000 (22:47 +0530)]
gnu: emacs: Build with m17n support.

* gnu/packages/emacs.scm (emacs): Build with m17n support.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
7 years agognu: Add m17n-lib.
Arun Isaac [Tue, 27 Sep 2016 17:17:21 +0000 (22:47 +0530)]
gnu: Add m17n-lib.

* gnu/packages/emacs.scm (m17n-lib): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
7 years agognu: Add m17n-db.
Arun Isaac [Tue, 27 Sep 2016 17:17:20 +0000 (22:47 +0530)]
gnu: Add m17n-db.

* gnu/packages/emacs.scm (m17n-db): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
7 years agognu: c-ares: Update to 1.12.0 [fixes CVE-2016-5180].
Leo Famulari [Thu, 29 Sep 2016 15:12:55 +0000 (11:12 -0400)]
gnu: c-ares: Update to 1.12.0 [fixes CVE-2016-5180].

* gnu/packages/adns.scm (c-ares): Update to 1.12.0.
[source]: Use HTTPS URL.
[home-page]: Use HTTPS URL.

7 years agoRevert "gnu: %default-extra-linux-options: Remove redundant options."
David Craven [Thu, 29 Sep 2016 10:50:47 +0000 (12:50 +0200)]
Revert "gnu: %default-extra-linux-options: Remove redundant options."

Options aren't redundant and are required for building the initrd.

This reverts commit 50dbc03647170fded9e0bca0cc4b7e1614aa38db.

7 years agognu: dbus-c++: License has "or later" clause.
Ludovic Courtès [Wed, 28 Sep 2016 12:13:55 +0000 (14:13 +0200)]
gnu: dbus-c++: License has "or later" clause.

* gnu/packages/glib.scm (dbus-c++)[license]: Change to LGPL2.1+.

7 years agodoc: Give the full key fingerprint instead of the long key ID.
Leo Famulari [Tue, 27 Sep 2016 18:12:02 +0000 (14:12 -0400)]
doc: Give the full key fingerprint instead of the long key ID.

* doc/guix.texi (OPENPGP-SIGNING-KEY-ID): Use fingerprint instead of
long key ID.

7 years agognu: sra-tools: Fix build on i686.
Ricardo Wurmus [Wed, 28 Sep 2016 20:28:51 +0000 (22:28 +0200)]
gnu: sra-tools: Fix build on i686.

* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Pass
"VDB_LIBDIR" in make-flags; dynamically link libmagic.

7 years agognu: tilda: Update to 1.3.3.
Efraim Flashner [Wed, 28 Sep 2016 18:38:38 +0000 (21:38 +0300)]
gnu: tilda: Update to 1.3.3.

* gnu/packages/terminals.scm (tilda): Update to 1.3.3.

7 years agognu: Add xonsh.
Stefan Reichoer [Wed, 21 Sep 2016 19:58:52 +0000 (21:58 +0200)]
gnu: Add xonsh.

* gnu/packages/shells.scm (xonsh): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
7 years agognu: attic: Superseded by borg.
Leo Famulari [Sat, 24 Sep 2016 03:36:48 +0000 (23:36 -0400)]
gnu: attic: Superseded by borg.

* gnu/packages/backup.scm (attic)[properties]: New field.

7 years agognu: nestopia-ue: Update to version 1.47.
Taylan Ulrich Bayırlı/Kammer [Wed, 21 Sep 2016 18:29:21 +0000 (20:29 +0200)]
gnu: nestopia-ue: Update to version 1.47.

7 years agognu: higan: Update to version 101.
Taylan Ulrich Bayırlı/Kammer [Wed, 14 Sep 2016 19:38:30 +0000 (21:38 +0200)]
gnu: higan: Update to version 101.

* gnu/packages/games.scm (higan): Update to version 101.

7 years agognu: git: Add input perl-term-readkey for 'git-svn'.
Thomas Danckaert [Tue, 27 Sep 2016 13:38:51 +0000 (15:38 +0200)]
gnu: git: Add input perl-term-readkey for 'git-svn'.

* gnu/packages/version-control.scm (git)[inputs]: Add perl-term-readkeys.
[arguments]: Add perl-term-readkeys to the PERL5LIB of `git-svn'.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
7 years agoimport: utils: Refactor license->symbol.
David Craven [Thu, 22 Sep 2016 09:35:13 +0000 (11:35 +0200)]
import: utils: Refactor license->symbol.

* guix/import/utils.scm (license->symbol): Work for all licenses.
* tests/import-utils.scm (license->symbol): Add test.

7 years agoimport: utils: Add spdx-string->license.
David Craven [Thu, 22 Sep 2016 09:33:46 +0000 (11:33 +0200)]
import: utils: Add spdx-string->license.

* guix/import/utils.scm (spdx-string->license): New variable.
* guix/licenses.scm (agpl1, fdl1.2+): New variables.

7 years agoimport: Move string->license to importers.
David Craven [Thu, 22 Sep 2016 09:30:17 +0000 (11:30 +0200)]
import: Move string->license to importers.

* guix/import/gem.scm (string->license): Move from (guix import utils).
* guix/import/pypi.scm (string->license): Move from (guix import utils).

7 years agoimport: Reorder imports in (guix import utils).
David Craven [Thu, 22 Sep 2016 09:25:31 +0000 (11:25 +0200)]
import: Reorder imports in (guix import utils).

* guix/import/utils.scm (define-module): Reorder imports alphabetically.

7 years agognu: linux-libre-beagle-bone-black: Remove kernel variant.
David Craven [Mon, 26 Sep 2016 10:11:28 +0000 (12:11 +0200)]
gnu: linux-libre-beagle-bone-black: Remove kernel variant.

linux-libre-beagle-bone-black is misslabeled. This kernel variant is
for the original beagle board.

* gnu/packages/linux.scm (linux-libre-beagle-bone-black): Remove.

7 years agognu: make-linux-libre: Install device tree files.
David Craven [Mon, 26 Sep 2016 10:10:21 +0000 (12:10 +0200)]
gnu: make-linux-libre: Install device tree files.

* gnu/packages/linux.scm (make-linux-libre): Install device tree files.

7 years agognu: %default-extra-linux-options: Remove redundant options.
David Craven [Mon, 26 Sep 2016 10:08:15 +0000 (12:08 +0200)]
gnu: %default-extra-linux-options: Remove redundant options.

* gnu/packages/linux.scm (%default-extra-linux-options): Remove
  redundant options.

7 years agognu: Add sdcc.
David Craven [Tue, 27 Sep 2016 17:39:26 +0000 (19:39 +0200)]
gnu: Add sdcc.

* gnu/packages/sdcc.scm (sdcc): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

7 years agognu: Add picocom.
David Craven [Fri, 23 Sep 2016 10:52:17 +0000 (12:52 +0200)]
gnu: Add picocom.

* gnu/packages/terminals.scm (picocom): New variable.

7 years agognu: opendht: Propagate msgpack.
Lukas Gradl [Tue, 13 Sep 2016 02:29:06 +0000 (21:29 -0500)]
gnu: opendht: Propagate msgpack.

* gnu/packages/crypto.scm (opendht)[inputs]: Remove msgpack.
[propagated-inputs]: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
7 years agognu: telephony: Add 'license:' prefix.
Lukas Gradl [Sun, 28 Aug 2016 17:40:21 +0000 (12:40 -0500)]
gnu: telephony: Add 'license:' prefix.

* gnu/packages/telephony.scm (commoncpp) [license]: Add prefix.
(ucommon) [license]: Add prefix.
(ccrtp) [license]: Add prefix.
(osip) [license]: Add prefix.
(exosip) [license]: Add prefix.
(sipwitch) [license]: Add prefix.
(libsrtp) [license]: Add prefix.
(libiax2) [license]: Add prefix.
(seren) [license]: Add prefix.
(pjproject-sfl) [license]: Add prefix.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
7 years agognu: Add gsm.
Lukas Gradl [Tue, 9 Aug 2016 21:43:36 +0000 (16:43 -0500)]
gnu: Add gsm.

* gnu/packages/audio.scm (gsm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
7 years agognu: Add dbus-c++.
Lukas Gradl [Thu, 21 Jul 2016 13:39:54 +0000 (08:39 -0500)]
gnu: Add dbus-c++.

* gnu/packages/glib.scm (dbus-c++): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
7 years agognu: libressl: Update to 2.5.0.
Leo Famulari [Wed, 28 Sep 2016 00:40:13 +0000 (20:40 -0400)]
gnu: libressl: Update to 2.5.0.

* gnu/packages/tls.scm (libressl): Update to 2.5.0.

7 years agognu: encfs: Update to 1.9.1.
Tobias Geerinckx-Rice [Tue, 27 Sep 2016 12:21:56 +0000 (14:21 +0200)]
gnu: encfs: Update to 1.9.1.

* gnu/packages/crypto.scm (encfs): Update to 1.9.1.

7 years agognu: btrfs-progs: Update to 4.7.3.
Tobias Geerinckx-Rice [Tue, 27 Sep 2016 10:22:53 +0000 (12:22 +0200)]
gnu: btrfs-progs: Update to 4.7.3.

* gnu/packages/linux.scm (btrfs-progs): Update to 4.7.3.

7 years agognu: zip: Use 'modify-phases'.
Tobias Geerinckx-Rice [Sat, 20 Aug 2016 17:27:20 +0000 (19:27 +0200)]
gnu: zip: Use 'modify-phases'.

* gnu/packages/zip.scm (zip)[arguments]: Use 'modify-phases'.

7 years agognu: isc-dhcp: Update bundled bind to 9.9.9-P3 [fixes CVE-2016-2776].
Leo Famulari [Tue, 27 Sep 2016 19:10:57 +0000 (15:10 -0400)]
gnu: isc-dhcp: Update bundled bind to 9.9.9-P3 [fixes CVE-2016-2776].

* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled bind to 9.9.9-P3.

7 years agognu: bind: Update to 9.10.4-P3 [fixes CVE-2016-2776].
Leo Famulari [Tue, 27 Sep 2016 19:03:16 +0000 (15:03 -0400)]
gnu: bind: Update to 9.10.4-P3 [fixes CVE-2016-2776].

* gnu/packages/dns.scm (bind): Update to 9.10.4-P3.

7 years agognu: Add python-q.
Stefan Reichoer [Fri, 16 Sep 2016 21:00:06 +0000 (23:00 +0200)]
gnu: Add python-q.

* gnu/packages/python.scm (python-q, python2-q): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>