jackhill/guix/guix.git
7 years agognu: ghostscript: Fix CVE-2017-8291.
Leo Famulari [Fri, 28 Apr 2017 20:34:05 +0000 (16:34 -0400)]
gnu: ghostscript: Fix CVE-2017-8291.

* gnu/packages/patches/ghostscript-CVE-2017-8291.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field.
(ghostscript/fixed): New variable.
(ghostscript-with-x)[replacement]: New field.

7 years agognu: youtube-dl: Update to 2017.04.28.
Arun Isaac [Fri, 28 Apr 2017 16:36:58 +0000 (22:06 +0530)]
gnu: youtube-dl: Update to 2017.04.28.

* gnu/packages/video.scm (youtube-dl): Update to 2017.04.28.

7 years agognu: Add enigma.
Ricardo Wurmus [Thu, 27 Apr 2017 08:42:21 +0000 (10:42 +0200)]
gnu: Add enigma.

* gnu/packages/games.scm (enigma): New variable.

7 years agognu: Add xerces-c.
Ricardo Wurmus [Thu, 27 Apr 2017 06:52:04 +0000 (08:52 +0200)]
gnu: Add xerces-c.

* gnu/packages/xml.scm (xerces-c): New variable.

7 years agognu: schismtracker: Update to 20170420.
Kei Kebreau [Fri, 28 Apr 2017 15:31:47 +0000 (11:31 -0400)]
gnu: schismtracker: Update to 20170420.

* gnu/packages/music.scm (schismtracker): Update to 20170420.

7 years agognu: awscli: Add python-pyyaml input.
David Thompson [Fri, 28 Apr 2017 13:20:37 +0000 (09:20 -0400)]
gnu: awscli: Add python-pyyaml input.

Without this input, 'aws ec2 import-key-pair' doesn't work.

* gnu/packages/python.scm (awscli)[propagated-inputs]: Add python-pyyaml.

7 years agognu: virt-manager: Update to 1.4.1.
宋文武 [Fri, 28 Apr 2017 13:01:01 +0000 (21:01 +0800)]
gnu: virt-manager: Update to 1.4.1.

* gnu/packages/qemu.scm (virt-manager): Update to 1.4.1.

7 years agognu: python-libvirt: Update to 3.2.0.
宋文武 [Fri, 28 Apr 2017 12:53:15 +0000 (20:53 +0800)]
gnu: python-libvirt: Update to 3.2.0.

* gnu/packages/qemu.scm (python-libvirt, python2-libvirt): Update to 3.2.0.

7 years agognu: libvirt-glib: Update to 1.0.0.
宋文武 [Fri, 28 Apr 2017 12:23:56 +0000 (20:23 +0800)]
gnu: libvirt-glib: Update to 1.0.0.

* gnu/packages/qemu.scm (libvirt-glib): Update to 1.0.0.

7 years agognu: libvirt: Update to 3.2.0.
宋文武 [Fri, 28 Apr 2017 12:19:20 +0000 (20:19 +0800)]
gnu: libvirt: Update to 3.2.0.

* gnu/packages/qemu.scm (libvirt): Update to 3.2.0.

7 years agognu: r-preprocesscore: Update to 1.38.0.
Roel Janssen [Fri, 28 Apr 2017 08:53:56 +0000 (10:53 +0200)]
gnu: r-preprocesscore: Update to 1.38.0.

* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.0.

7 years agognu: r-msnid: Update to 1.10.0.
Roel Janssen [Fri, 28 Apr 2017 08:53:34 +0000 (10:53 +0200)]
gnu: r-msnid: Update to 1.10.0.

* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.10.0.

7 years agognu: r-msnbase: Update to 2.2.0.
Roel Janssen [Fri, 28 Apr 2017 08:53:17 +0000 (10:53 +0200)]
gnu: r-msnbase: Update to 2.2.0.

* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.2.0.

7 years agognu: r-pcamethods: Update to 1.68.0.
Roel Janssen [Fri, 28 Apr 2017 08:53:01 +0000 (10:53 +0200)]
gnu: r-pcamethods: Update to 1.68.0.

* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.68.0.

7 years agognu: r-mzid: Update to 1.14.0.
Roel Janssen [Fri, 28 Apr 2017 08:52:43 +0000 (10:52 +0200)]
gnu: r-mzid: Update to 1.14.0.

* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.14.0.

7 years agognu: r-vsn: Update to 3.44.0.
Roel Janssen [Fri, 28 Apr 2017 08:51:53 +0000 (10:51 +0200)]
gnu: r-vsn: Update to 3.44.0.

* gnu/packages/bioinformatics.scm (r-vsn):
[source]: Update to 3.44.0,
[propagated-inputs]: Add r-hexbin.

7 years agognu: r-affy: Update to 1.54.0.
Roel Janssen [Fri, 28 Apr 2017 08:51:32 +0000 (10:51 +0200)]
gnu: r-affy: Update to 1.54.0.

* gnu/packages/bioinformatics.scm (r-affy): Update to 1.54.0.

7 years agognu: r-affyio: Update to 1.46.0.
Roel Janssen [Fri, 28 Apr 2017 08:51:14 +0000 (10:51 +0200)]
gnu: r-affyio: Update to 1.46.0.

* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.46.0.

7 years agognu: r-mzr: Update to 2.10.0.
Roel Janssen [Fri, 28 Apr 2017 08:50:54 +0000 (10:50 +0200)]
gnu: r-mzr: Update to 2.10.0.

* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.10.0.

7 years agognu: r-protgenerics: Update to 1.8.0.
Roel Janssen [Fri, 28 Apr 2017 08:50:40 +0000 (10:50 +0200)]
gnu: r-protgenerics: Update to 1.8.0.

* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.8.0.

7 years agognu: r-sva: Update to 3.24.0.
Roel Janssen [Fri, 28 Apr 2017 08:50:23 +0000 (10:50 +0200)]
gnu: r-sva: Update to 3.24.0.

* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.0.

7 years agognu: r-copywriter: Update to 2.8.0.
Roel Janssen [Fri, 28 Apr 2017 08:50:06 +0000 (10:50 +0200)]
gnu: r-copywriter: Update to 2.8.0.

* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.0.

7 years agognu: r-chipseq: Update to 1.26.0.
Roel Janssen [Fri, 28 Apr 2017 08:49:47 +0000 (10:49 +0200)]
gnu: r-chipseq: Update to 1.26.0.

* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.26.0.

7 years agognu: r-rhdf5: Update to 2.20.0.
Roel Janssen [Fri, 28 Apr 2017 08:49:16 +0000 (10:49 +0200)]
gnu: r-rhdf5: Update to 2.20.0.

* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.20.0.

7 years agognu: r-tximport: Update to 1.4.0.
Roel Janssen [Fri, 28 Apr 2017 08:48:57 +0000 (10:48 +0200)]
gnu: r-tximport: Update to 1.4.0.

* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.4.0.

7 years agognu: r-mutationalpatterns: Update to 1.2.0.
Roel Janssen [Fri, 28 Apr 2017 08:47:53 +0000 (10:47 +0200)]
gnu: r-mutationalpatterns: Update to 1.2.0.

* gnu/packages/bioinformatics.scm (r-mutationalpatterns):
[source]: Update to 1.2.0,
[propagated-inputs]: Add r-bsgenome-hsapiens-1000genomes-hs37d5,
  r-bsgenome-hsapiens-ucsc-hg19.

7 years agognu: r-bamsignals: Update to 1.8.0.
Roel Janssen [Fri, 28 Apr 2017 08:47:10 +0000 (10:47 +0200)]
gnu: r-bamsignals: Update to 1.8.0.

* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.8.0.

7 years agognu: r-rhtslib: Update to 1.8.0.
Roel Janssen [Fri, 28 Apr 2017 08:46:55 +0000 (10:46 +0200)]
gnu: r-rhtslib: Update to 1.8.0.

* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.8.0.

7 years agognu: r-zlibbioc: Update to 1.22.0.
Roel Janssen [Fri, 28 Apr 2017 08:46:38 +0000 (10:46 +0200)]
gnu: r-zlibbioc: Update to 1.22.0.

* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.22.0.

7 years agognu: r-motifrg: Update to 1.20.0.
Roel Janssen [Fri, 28 Apr 2017 08:46:18 +0000 (10:46 +0200)]
gnu: r-motifrg: Update to 1.20.0.

* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.20.0.

7 years agognu: r-seqlogo: Update to 1.42.0.
Roel Janssen [Fri, 28 Apr 2017 08:45:59 +0000 (10:45 +0200)]
gnu: r-seqlogo: Update to 1.42.0.

* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.42.0.

7 years agognu: r-genomation: Update to 1.8.0.
Roel Janssen [Fri, 28 Apr 2017 08:45:43 +0000 (10:45 +0200)]
gnu: r-genomation: Update to 1.8.0.

* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.8.0.

7 years agognu: r-seqpattern: Update to 1.8.0.
Roel Janssen [Fri, 28 Apr 2017 08:45:28 +0000 (10:45 +0200)]
gnu: r-seqpattern: Update to 1.8.0.

* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.8.0.

7 years agognu: r-impute: Update to 1.50.0.
Roel Janssen [Fri, 28 Apr 2017 08:45:10 +0000 (10:45 +0200)]
gnu: r-impute: Update to 1.50.0.

* gnu/packages/bioinformatics.scm (r-impute): Update to 1.50.0.

7 years agognu: r-bsgenome: Update to 1.44.0.
Roel Janssen [Fri, 28 Apr 2017 08:44:51 +0000 (10:44 +0200)]
gnu: r-bsgenome: Update to 1.44.0.

* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.44.0.

7 years agognu: r-topgo: Update to 2.28.0.
Roel Janssen [Fri, 28 Apr 2017 08:44:32 +0000 (10:44 +0200)]
gnu: r-topgo: Update to 2.28.0.

* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.28.0.

7 years agognu: r-graph: Update to 1.54.0.
Roel Janssen [Fri, 28 Apr 2017 08:44:14 +0000 (10:44 +0200)]
gnu: r-graph: Update to 1.54.0.

* gnu/packages/bioinformatics.scm (r-graph): Update to 1.54.0.

7 years agognu: r-genomicfeatures: Update to 1.28.0.
Roel Janssen [Fri, 28 Apr 2017 08:43:58 +0000 (10:43 +0200)]
gnu: r-genomicfeatures: Update to 1.28.0.

* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.0.

7 years agognu: r-rtracklayer: Update to 1.36.0.
Roel Janssen [Fri, 28 Apr 2017 08:43:40 +0000 (10:43 +0200)]
gnu: r-rtracklayer: Update to 1.36.0.

* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.0.

7 years agognu: r-genomicalignments: Update to 1.12.0.
Roel Janssen [Fri, 28 Apr 2017 08:43:21 +0000 (10:43 +0200)]
gnu: r-genomicalignments: Update to 1.12.0.

* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.0.

7 years agognu: r-summarizedexperiment: Update to 1.6.0.
Roel Janssen [Fri, 28 Apr 2017 08:42:25 +0000 (10:42 +0200)]
gnu: r-summarizedexperiment: Update to 1.6.0.

* gnu/packages/bioinformatics.scm (r-summarizedexperiment):
[source]: Update to 1.6.0,
[propagated-inputs]: Add r-delayedarray.

7 years agognu: r-rsamtools: Update to 1.28.0.
Roel Janssen [Fri, 28 Apr 2017 08:42:01 +0000 (10:42 +0200)]
gnu: r-rsamtools: Update to 1.28.0.

* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.28.0.

7 years agognu: r-biostrings: Update to 2.44.0.
Roel Janssen [Fri, 28 Apr 2017 08:41:43 +0000 (10:41 +0200)]
gnu: r-biostrings: Update to 2.44.0.

* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.0.

7 years agognu: r-biocparallel: Update to 1.10.0.
Roel Janssen [Fri, 28 Apr 2017 08:41:25 +0000 (10:41 +0200)]
gnu: r-biocparallel: Update to 1.10.0.

* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.0.

7 years agognu: r-biomart: Update to 2.32.0.
Roel Janssen [Fri, 28 Apr 2017 08:41:07 +0000 (10:41 +0200)]
gnu: r-biomart: Update to 2.32.0.

* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.0.

7 years agognu: r-annotationdbi: Update to 1.38.0.
Roel Janssen [Fri, 28 Apr 2017 08:40:44 +0000 (10:40 +0200)]
gnu: r-annotationdbi: Update to 1.38.0.

* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.0.

7 years agognu: r-biobase: Update to 2.36.0.
Roel Janssen [Fri, 28 Apr 2017 08:40:19 +0000 (10:40 +0200)]
gnu: r-biobase: Update to 2.36.0.

* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.0.

7 years agognu: r-genomicranges: Update to 1.28.0.
Roel Janssen [Fri, 28 Apr 2017 08:40:00 +0000 (10:40 +0200)]
gnu: r-genomicranges: Update to 1.28.0.

* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.0.

7 years agognu: r-xvector: Update to 0.16.0.
Roel Janssen [Fri, 28 Apr 2017 08:39:42 +0000 (10:39 +0200)]
gnu: r-xvector: Update to 0.16.0.

* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.16.0.

7 years agognu: r-limma: Update to 3.32.0.
Roel Janssen [Fri, 28 Apr 2017 08:39:25 +0000 (10:39 +0200)]
gnu: r-limma: Update to 3.32.0.

* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.0.

7 years agognu: r-variantannotation: Update to 1.22.0.
Roel Janssen [Fri, 28 Apr 2017 08:39:04 +0000 (10:39 +0200)]
gnu: r-variantannotation: Update to 1.22.0.

* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.0.

7 years agognu: r-edger: Update to 3.18.0.
Roel Janssen [Fri, 28 Apr 2017 08:38:44 +0000 (10:38 +0200)]
gnu: r-edger: Update to 3.18.0.

* gnu/packages/bioinformatics.scm (r-edger): Update to 3.18.0.

7 years agognu: r-genomeinfodb: Update to 1.12.0.
Roel Janssen [Fri, 28 Apr 2017 08:37:42 +0000 (10:37 +0200)]
gnu: r-genomeinfodb: Update to 1.12.0.

* gnu/packages/bioinformatics.scm (r-genomeinfodb): [source] Update to 1.12.0,
[propagated-inputs]: Add r-genomeinfodbdata.

7 years agognu: r-iranges: Update to 2.10.0.
Roel Janssen [Fri, 28 Apr 2017 08:37:15 +0000 (10:37 +0200)]
gnu: r-iranges: Update to 2.10.0.

* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.0.

7 years agognu: r-s4vectors: Update to 0.14.0.
Roel Janssen [Fri, 28 Apr 2017 08:36:50 +0000 (10:36 +0200)]
gnu: r-s4vectors: Update to 0.14.0.

* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.0.

7 years agognu: r-dnacopy: Update to 1.50.0.
Roel Janssen [Fri, 28 Apr 2017 08:36:24 +0000 (10:36 +0200)]
gnu: r-dnacopy: Update to 1.50.0.

* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.0.

7 years agognu: r-bioccheck: Update to 1.12.0.
Roel Janssen [Fri, 28 Apr 2017 08:36:02 +0000 (10:36 +0200)]
gnu: r-bioccheck: Update to 1.12.0.

* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.12.0.

7 years agognu: r-biocstyle: Update to 2.4.0.
Roel Janssen [Fri, 28 Apr 2017 08:33:54 +0000 (10:33 +0200)]
gnu: r-biocstyle: Update to 2.4.0.

* gnu/packages/bioinformatics.scm (r-biocstyle): [source] Update to 2.4.0.
[propagated-inputs]: Add r-bookdown, r-knitr, r-rmarkdown, r-yaml.

7 years agognu: r-biocviews: Update to 1.44.0.
Roel Janssen [Fri, 28 Apr 2017 08:33:26 +0000 (10:33 +0200)]
gnu: r-biocviews: Update to 1.44.0.

* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.44.0.

7 years agognu: r-biocinstaller: Update to 1.26.0.
Roel Janssen [Fri, 28 Apr 2017 08:32:58 +0000 (10:32 +0200)]
gnu: r-biocinstaller: Update to 1.26.0.

* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.26.0.

7 years agognu: r-biocgenerics: Update to 0.22.0.
Roel Janssen [Fri, 28 Apr 2017 08:32:37 +0000 (10:32 +0200)]
gnu: r-biocgenerics: Update to 0.22.0.

* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.22.0.

7 years agognu: r-grohmm: Update to 1.10.0.
Roel Janssen [Fri, 28 Apr 2017 08:32:10 +0000 (10:32 +0200)]
gnu: r-grohmm: Update to 1.10.0.

* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.10.0.

7 years agognu: r-systempiper: Update to 1.10.0.
Roel Janssen [Fri, 28 Apr 2017 08:31:50 +0000 (10:31 +0200)]
gnu: r-systempiper: Update to 1.10.0.

* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.10.0.

7 years agognu: r-shortread: Update to 1.34.0.
Roel Janssen [Fri, 28 Apr 2017 08:31:29 +0000 (10:31 +0200)]
gnu: r-shortread: Update to 1.34.0.

* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.34.0.

7 years agognu: r-gostats: Update to 2.42.0.
Roel Janssen [Fri, 28 Apr 2017 08:31:05 +0000 (10:31 +0200)]
gnu: r-gostats: Update to 2.42.0.

* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.42.0.

7 years agognu: r-category: Update to 2.42.0.
Roel Janssen [Fri, 28 Apr 2017 08:30:44 +0000 (10:30 +0200)]
gnu: r-category: Update to 2.42.0.

* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.0.

7 years agognu: r-gseabase: Update to 1.38.0.
Roel Janssen [Fri, 28 Apr 2017 08:30:20 +0000 (10:30 +0200)]
gnu: r-gseabase: Update to 1.38.0.

* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.38.0.

7 years agognu: r-rbgl: Update to 1.52.0.
Roel Janssen [Fri, 28 Apr 2017 08:29:48 +0000 (10:29 +0200)]
gnu: r-rbgl: Update to 1.52.0.

* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.52.0.

7 years agognu: r-annotationforge: Update to 1.18.0.
Roel Janssen [Fri, 28 Apr 2017 08:29:20 +0000 (10:29 +0200)]
gnu: r-annotationforge: Update to 1.18.0.

* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.0.

7 years agognu: r-deseq2: Update to 1.16.0.
Roel Janssen [Fri, 28 Apr 2017 08:28:44 +0000 (10:28 +0200)]
gnu: r-deseq2: Update to 1.16.0.

* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.0.

7 years agognu: r-genefilter: Update to 1.58.0.
Roel Janssen [Fri, 28 Apr 2017 08:28:10 +0000 (10:28 +0200)]
gnu: r-genefilter: Update to 1.58.0.

* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.58.0.

7 years agognu: r-geneplotter: Update to 1.54.0.
Roel Janssen [Fri, 28 Apr 2017 08:27:29 +0000 (10:27 +0200)]
gnu: r-geneplotter: Update to 1.54.0.

* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.54.0.

7 years agognu: r-annotate: Update to 1.54.0.
Roel Janssen [Fri, 28 Apr 2017 08:26:57 +0000 (10:26 +0200)]
gnu: r-annotate: Update to 1.54.0.

* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.54.0.

7 years agoimport: Update Bioconductor release to 3.5.
Roel Janssen [Fri, 28 Apr 2017 09:02:26 +0000 (11:02 +0200)]
import: Update Bioconductor release to 3.5.

* guix/import/cran.scm: Change Bioconductor release to 3.5.

7 years agognu: Add r-genomeinfodbdata.
Roel Janssen [Fri, 28 Apr 2017 08:17:06 +0000 (10:17 +0200)]
gnu: Add r-genomeinfodbdata.

* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): New variable.

7 years agognu: Add r-delayedarray.
Roel Janssen [Fri, 28 Apr 2017 08:15:12 +0000 (10:15 +0200)]
gnu: Add r-delayedarray.

* gnu/packages/bioinformatics.scm (r-delayedarray): New variable.

7 years agognu: Add r-bookdown.
Roel Janssen [Fri, 28 Apr 2017 08:09:31 +0000 (10:09 +0200)]
gnu: Add r-bookdown.

* gnu/packages/bioinformatics.scm (r-bookdown): New variable.

7 years agognu: linux-libre: Update to 4.10.13.
Mark H Weaver [Fri, 28 Apr 2017 04:41:35 +0000 (00:41 -0400)]
gnu: linux-libre: Update to 4.10.13.

* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.13.
(%linux-libre-hash): Update hash.

7 years agognu: linux-libre@4.9: Update to 4.9.25.
Mark H Weaver [Fri, 28 Apr 2017 04:40:48 +0000 (00:40 -0400)]
gnu: linux-libre@4.9: Update to 4.9.25.

* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.25.

7 years agognu: linux-libre@4.4: Update to 4.4.64.
Mark H Weaver [Fri, 28 Apr 2017 04:39:53 +0000 (00:39 -0400)]
gnu: linux-libre@4.4: Update to 4.4.64.

* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.64.

7 years agognu: serf: Update to 1.3.9.
Marius Bakke [Thu, 27 Apr 2017 15:52:48 +0000 (17:52 +0200)]
gnu: serf: Update to 1.3.9.

* gnu/packages/patches/serf-comment-style-fix.patch,
gnu/packages/patches/serf-deflate-buckets-test-fix.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/web.scm (serf): Update to 1.3.9.
[source]: Remove patches.

7 years agognu: serf: Disable expired SSL tests.
Marius Bakke [Thu, 27 Apr 2017 15:48:28 +0000 (17:48 +0200)]
gnu: serf: Disable expired SSL tests.

Fixes <https://bugs.gnu.org/26671>.

* gnu/packages/web.scm (serf)[arguments]<#:phases>: Add 'disable-broken-tests'.

7 years agognu: kodi: Update to 18.0_alpha-3-749c61e.
Marius Bakke [Wed, 26 Apr 2017 20:24:32 +0000 (22:24 +0200)]
gnu: kodi: Update to 18.0_alpha-3-749c61e.

* gnu/packages/kodi.scm (kodi): Update to 18.0_alpha-3-749c61e.

7 years agognu: tor: Update to 0.3.0.6.
Tobias Geerinckx-Rice [Thu, 27 Apr 2017 10:13:40 +0000 (12:13 +0200)]
gnu: tor: Update to 0.3.0.6.

* gnu/packages/tor.scm (tor): Update to 0.3.0.6.

7 years agognu: simple-scan: Update to 3.24.1.
Tobias Geerinckx-Rice [Thu, 27 Apr 2017 07:37:32 +0000 (09:37 +0200)]
gnu: simple-scan: Update to 3.24.1.

* gnu/packages/gnome.scm (simple-scan): Update to 3.24.1.

7 years agognu: Add mdbtools.
Arun Isaac [Wed, 26 Apr 2017 16:36:31 +0000 (22:06 +0530)]
gnu: Add mdbtools.

* gnu/packages/databases.scm (mdbtools): New variable.

7 years agoMerge branch 'staging'
Leo Famulari [Thu, 27 Apr 2017 04:33:06 +0000 (00:33 -0400)]
Merge branch 'staging'

7 years agognu: owncloud-client: Update to 2.3.1.
Efraim Flashner [Wed, 26 Apr 2017 10:17:12 +0000 (13:17 +0300)]
gnu: owncloud-client: Update to 2.3.1.

* gnu/packages/sync.scm (owncloud-client): Update to 2.3.1.
[arguments]: Enable more tests.

7 years agognu: synergy: Update to 1.8.8.
Vasile Dumitrascu [Wed, 26 Apr 2017 05:02:27 +0000 (07:02 +0200)]
gnu: synergy: Update to 1.8.8.

* gnu/packages/synergy.scm (synergy): Update to 1.8.8.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
7 years agognu: Add Xfce Notification Daemon.
Petter [Wed, 26 Apr 2017 13:41:09 +0000 (15:41 +0200)]
gnu: Add Xfce Notification Daemon.

* gnu/packages/xfce.scm (xfce4-notifyd): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
7 years agognu: Add volk.
Danny Milosavljevic [Sat, 22 Apr 2017 21:35:47 +0000 (23:35 +0200)]
gnu: Add volk.

Fixes <http://bugs.gnu.org/26614>.

* gnu/packages/engineering.scm (volk): New variable.

7 years agognu: nss-pam-ldapd: Add Kerberos support.
Ricardo Wurmus [Tue, 25 Apr 2017 14:27:41 +0000 (16:27 +0200)]
gnu: nss-pam-ldapd: Add Kerberos support.

* gnu/packages/openldap.scm (nss-pam-ldapd)[inputs]: Add mit-krb5.

7 years agognu: nss-pam-ldapd: Look for nslcd.conf in global /etc/ directory.
Ricardo Wurmus [Tue, 25 Apr 2017 12:23:23 +0000 (14:23 +0200)]
gnu: nss-pam-ldapd: Look for nslcd.conf in global /etc/ directory.

* gnu/packages/openldap.scm (nss-pam-ldapd)[arguments]: Set
"--with-ldap-conf-file" to look for global configuration file; add build phase
to install example configuration file in the package output directory.

7 years agognu: ethtool: Update to 4.10.
Mathieu Othacehe [Wed, 26 Apr 2017 08:13:14 +0000 (10:13 +0200)]
gnu: ethtool: Update to 4.10.

* gnu/packages/networking.scm (ethtool): Update to 4.10.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
7 years agognu: ceph: Update to 12.0.2.
Marius Bakke [Tue, 25 Apr 2017 14:10:49 +0000 (16:10 +0200)]
gnu: ceph: Update to 12.0.2.

* gnu/packages/storage.scm (ceph): Update to 12.0.2.
[arguments]<#:phases>: Disable new test.
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust.

7 years agognu: vte-ng: Update to 0.48.2.a.
Marius Bakke [Tue, 25 Apr 2017 14:04:11 +0000 (16:04 +0200)]
gnu: vte-ng: Update to 0.48.2.a.

* gnu/packages/gnome.scm (vte-ng): Update to 0.48.2.a.
[native-inputs]: Change GPERF-3.0 to GPERF.

7 years agognu: Add gcompris-qt.
Efraim Flashner [Mon, 24 Apr 2017 09:55:00 +0000 (12:55 +0300)]
gnu: Add gcompris-qt.

* gnu/packages/education.scm (gcompris-qt): New variable.

7 years agognu: qtkeychain: Update to 0.8.0.
Efraim Flashner [Wed, 26 Apr 2017 06:42:13 +0000 (09:42 +0300)]
gnu: qtkeychain: Update to 0.8.0.

* gnu/packages/qt.scm (qtkeychain): Update to 0.8.0.

7 years agognu: fuse: Patch conflicting headers with the kernel.
Efraim Flashner [Tue, 25 Apr 2017 18:18:42 +0000 (21:18 +0300)]
gnu: fuse: Patch conflicting headers with the kernel.

* gnu/packages/linux.scm (fuse)[source]: Add patch.
* gnu/packages/patches/fuse-overlapping-headers.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

7 years agognu: Add guile-sjson.
Christopher Allan Webber [Tue, 25 Apr 2017 05:18:29 +0000 (00:18 -0500)]
gnu: Add guile-sjson.

* gnu/packages/guile.scm (guile-sjson): Add guile-sjson.