jackhill/guix/guix.git
4 years agoMerge remote-tracking branch 'origin/master' into wip-texlive
Ricardo Wurmus [Wed, 7 Aug 2019 20:26:55 +0000 (22:26 +0200)]
Merge remote-tracking branch 'origin/master' into wip-texlive

4 years agodeploy: Use all machine modules when loading deployment
Jakob L. Kreuze [Wed, 7 Aug 2019 12:43:27 +0000 (08:43 -0400)]
deploy: Use all machine modules when loading deployment

* guix/scripts/deploy.scm (load-source-file): Enumerate and include all
submodules of (gnu machine) when loading the provided deployment
specification.

4 years agoreconfigure: Improve tests for system activation.
Jakob L. Kreuze [Wed, 7 Aug 2019 12:42:42 +0000 (08:42 -0400)]
reconfigure: Improve tests for system activation.

* gnu/tests/reconfigure.scm (run-switch-to-system-test): Assert that
'/run/current-system' points to the activated system, and that new user
accounts specified in the operating system declaration are created.

4 years agognu: igt-gpu-tools: Rework custom phases.
Efraim Flashner [Wed, 7 Aug 2019 16:43:27 +0000 (19:43 +0300)]
gnu: igt-gpu-tools: Rework custom phases.

* gnu/packages/admin.scm (igt-gpu-tools)[arguments]: Use custom 'autogen
phase to replace 'bootstrap phase.

4 years agognu: dosbox: Remove extra build phase.
Efraim Flashner [Wed, 7 Aug 2019 16:41:11 +0000 (19:41 +0300)]
gnu: dosbox: Remove extra build phase.

* gnu/packages/emulators.scm (dosbox)[arguments]: Remove unneeded
'autogen phase.

4 years agognu: zimg: Remove extra build phase.
Efraim Flashner [Wed, 7 Aug 2019 16:39:10 +0000 (19:39 +0300)]
gnu: zimg: Remove extra build phase.

* gnu/packages/image.scm (zimg)[arguments]: Remove unneeded 'autogen
phase.

4 years agognu: leptonica: Remove extra build phase.
Efraim Flashner [Wed, 7 Aug 2019 16:36:38 +0000 (19:36 +0300)]
gnu: leptonica: Remove extra build phase.

* gnu/packages/image.scm (leptonica)[arguments]: Remove unneeded
'autogen phase.

4 years agognu: ghmm: Remove extra build phase.
Efraim Flashner [Wed, 7 Aug 2019 16:34:40 +0000 (19:34 +0300)]
gnu: ghmm: Remove extra build phase.

* gnu/packages/machine-learning.scm (ghmm)[arguments]: Remove unneeded
'autogen phase.

4 years agognu: ghmm: Update source file-name field.
Efraim Flashner [Wed, 7 Aug 2019 16:34:11 +0000 (19:34 +0300)]
gnu: ghmm: Update source file-name field.

* gnu/packages/machine-learning.scm (ghmm)[source]: Change 'file-name
field to include '-checkout' string.

4 years agognu: dovecot-libsodium-plugin: Remove extra build phase.
Efraim Flashner [Wed, 7 Aug 2019 16:29:59 +0000 (19:29 +0300)]
gnu: dovecot-libsodium-plugin: Remove extra build phase.

* gnu/packages/mail.scm (dovecot-libsodium-plugin)[arguments]: Remove
unneeded 'autogen phase.

4 years agognu: dovecot-trees: Remove extra build phase.
Efraim Flashner [Wed, 7 Aug 2019 16:28:44 +0000 (19:28 +0300)]
gnu: dovecot-trees: Remove extra build phase.

* gnu/packages/mail.scm (dovecot-trees)[arguments]: Remove unneeded
'autogen phase.

4 years agognu: libetpan: Rework custom phases.
Efraim Flashner [Wed, 7 Aug 2019 16:27:12 +0000 (19:27 +0300)]
gnu: libetpan: Rework custom phases.

* gnu/packages/mail.scm (libetpan)[arguments]: Use custom 'autogen phase
to replace 'boostrap phase.

4 years agognu: libmediainfo: Remove extra build phase.
Efraim Flashner [Wed, 7 Aug 2019 16:24:16 +0000 (19:24 +0300)]
gnu: libmediainfo: Remove extra build phase.

* gnu/packages/video.scm (libmediainfo)[arguments]: Remove unneeded
'autogen phase.

4 years agognu: libsmpeg: Remove extra build phase.
Efraim Flashner [Wed, 7 Aug 2019 16:21:56 +0000 (19:21 +0300)]
gnu: libsmpeg: Remove extra build phase.

* gnu/packages/video.scm (libsmpeg)[arguments]: Remove unnecessary
'autogen phase.

4 years agognu: vapoursynth: Remove extra build phase.
Efraim Flashner [Wed, 7 Aug 2019 16:19:27 +0000 (19:19 +0300)]
gnu: vapoursynth: Remove extra build phase.

* gnu/packages/video.scm (vapoursynth)[arguments]: Remove unneeded
'autogen phase.

4 years agognu: i3blocks: Remove extra build phase.
Efraim Flashner [Wed, 7 Aug 2019 16:16:15 +0000 (19:16 +0300)]
gnu: i3blocks: Remove extra build phase.

* gnu/packages/wm.scm (i3blocks)[arguments]: Remove unneeded 'autogen
phase.

4 years agognu: ocproxy: Remove extra build phase.
Efraim Flashner [Wed, 7 Aug 2019 16:13:06 +0000 (19:13 +0300)]
gnu: ocproxy: Remove extra build phase.

* gnu/packages/vpn.scm (ocproxy)[arguments]: Remove unneeded 'autogen
phase.

4 years agognu: openconnect: Fix propagated-inputs.
Efraim Flashner [Wed, 7 Aug 2019 16:09:37 +0000 (19:09 +0300)]
gnu: openconnect: Fix propagated-inputs.

* gnu/packages/vpn.scm (openconnect)[inputs]: Move libxml2, gnutls,
zlib ...
[propagated-inputs]: ... to here.

4 years agognu: gnome-maps: Fix runtime error.
Ricardo Wurmus [Wed, 7 Aug 2019 17:02:10 +0000 (19:02 +0200)]
gnu: gnome-maps: Fix runtime error.

Fixes <https://bugs.gnu.org/35761>.

* gnu/packages/geo.scm (gnome-maps)[arguments]: Add lib output of
gnome-online-accounts and geocode-glib to LD_LIBRARY_PATH.
[inputs]: Add gnome-online-accounts:lib.

4 years agognu: r-dt: Update to 0.8.
Ricardo Wurmus [Wed, 7 Aug 2019 10:52:53 +0000 (12:52 +0200)]
gnu: r-dt: Update to 0.8.

* gnu/packages/statistics.scm (r-dt): Update to 0.8.
[propagated-inputs]: Add r-jsonlite.

4 years agognu: r-epi: Update to 2.38.
Ricardo Wurmus [Wed, 7 Aug 2019 10:52:42 +0000 (12:52 +0200)]
gnu: r-epi: Update to 2.38.

* gnu/packages/cran.scm (r-epi): Update to 2.38.

4 years agognu: r-ggpubr: Update to 0.2.2.
Ricardo Wurmus [Wed, 7 Aug 2019 10:52:21 +0000 (12:52 +0200)]
gnu: r-ggpubr: Update to 0.2.2.

* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.2.
[propagated-inputs]: Add r-rlang.

4 years agognu: r-tinytex: Update to 0.15.
Ricardo Wurmus [Wed, 7 Aug 2019 10:52:08 +0000 (12:52 +0200)]
gnu: r-tinytex: Update to 0.15.

* gnu/packages/cran.scm (r-tinytex): Update to 0.15.

4 years agognu: r-servr: Update to 0.15.
Ricardo Wurmus [Wed, 7 Aug 2019 10:52:00 +0000 (12:52 +0200)]
gnu: r-servr: Update to 0.15.

* gnu/packages/cran.scm (r-servr): Update to 0.15.

4 years agognu: dolphin-emu: Update to commit 24718c1.
Rutger Helling [Wed, 7 Aug 2019 06:13:37 +0000 (08:13 +0200)]
gnu: dolphin-emu: Update to commit 24718c1.

* gnu/packages/emulators.scm (dolphin-emu): Update to commit 24718c1.

4 years agognu: linux-libre: Update to 5.2.7.
Mark H Weaver [Wed, 7 Aug 2019 04:26:39 +0000 (00:26 -0400)]
gnu: linux-libre: Update to 5.2.7.

* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.7.
(linux-libre-5.2-pristine-source)[hash]: Update hash.

4 years agognu: linux-libre@4.19: Update to 4.19.65.
Mark H Weaver [Wed, 7 Aug 2019 04:26:01 +0000 (00:26 -0400)]
gnu: linux-libre@4.19: Update to 4.19.65.

* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.65.
(linux-libre-4.19-pristine-source)[hash]: Update hash.

4 years agognu: linux-libre@4.14: Update to 4.14.137.
Mark H Weaver [Wed, 7 Aug 2019 04:25:04 +0000 (00:25 -0400)]
gnu: linux-libre@4.14: Update to 4.14.137.

* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.137.
(linux-libre-4.14-pristine-source)[hash]: Update hash.

4 years agognu: linux-libre@4.9: Update to 4.9.188.
Mark H Weaver [Wed, 7 Aug 2019 04:24:29 +0000 (00:24 -0400)]
gnu: linux-libre@4.9: Update to 4.9.188.

* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.188.
(linux-libre-4.9-pristine-source)[hash]: Update hash.

4 years agognu: linux-libre@4.4: Update to 4.4.188.
Mark H Weaver [Wed, 7 Aug 2019 04:23:20 +0000 (00:23 -0400)]
gnu: linux-libre@4.4: Update to 4.4.188.

* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.188.
(linux-libre-4.4-pristine-source)[hash]: Update hash.

4 years agognu: r-ggplotify: Update to 0.0.4.
Ricardo Wurmus [Tue, 6 Aug 2019 21:34:50 +0000 (23:34 +0200)]
gnu: r-ggplotify: Update to 0.0.4.

* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.4.

4 years agognu: r-bayestestr: Update to 0.2.5.
Ricardo Wurmus [Tue, 6 Aug 2019 21:34:42 +0000 (23:34 +0200)]
gnu: r-bayestestr: Update to 0.2.5.

* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.5.

4 years agomachine: Implement safety checks.
Jakob L. Kreuze [Wed, 31 Jul 2019 14:38:29 +0000 (10:38 -0400)]
machine: Implement safety checks.

* gnu/machine/ssh.scm (machine-check-file-system-availability)
(machine-check-initrd-modules, check-deployment-sanity): New variable.
(deploy-managed-host): Perform safety checks before deploying.

4 years agoreconfigure: Fix GC root installation.
Jakob L. Kreuze [Tue, 6 Aug 2019 17:37:32 +0000 (13:37 -0400)]
reconfigure: Fix GC root installation.

Fixes <https://bugs.gnu.org/36942>.
Reported by ison <ison@airmail.cc>.

guix/scripts/system/reconfigure.scm (install-bootloader-program): Switch
new symlink to the canonical bootloader configuration file.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
4 years agomachine: Rename 'system' field.
Jakob L. Kreuze [Tue, 30 Jul 2019 17:48:32 +0000 (13:48 -0400)]
machine: Rename 'system' field.

* gnu/machine.scm (machine-system): Delete variable.
(machine-operating-system): New variable.
All callers changed.
* doc/guix.texi (Invoking guix deploy): Use the
'machine-operating-system' accessor rather than 'machine-system'.

4 years agodoc: Add note about signing keys.
Jakob L. Kreuze [Mon, 29 Jul 2019 22:36:01 +0000 (18:36 -0400)]
doc: Add note about signing keys.

* doc/guix.texi (Invoking guix deploy): Add note explaining that
deployment targets must authorize the coordinator machine's signing key.

4 years agognu: perl-hash-merge: Change inputs to propagated-inputs.
Christopher Baines [Tue, 6 Aug 2019 18:53:51 +0000 (19:53 +0100)]
gnu: perl-hash-merge: Change inputs to propagated-inputs.

Clone::Choose is required at runtime, so this input needs to be
propagated. This change fixes the sqitch package.

* gnu/packages/perl.scm (perl-hash-merge)[inputs]: Change to
propagated-inputs.

4 years agognu: ffmpeg: Update to 4.2.
Rutger Helling [Tue, 6 Aug 2019 16:56:54 +0000 (18:56 +0200)]
gnu: ffmpeg: Update to 4.2.

* gnu/packages/video.scm (ffmpeg): Update to 4.2.
[inputs]: Add dav1d.
* gnu/packages/video.scm (ffmpeg-3.4)[arguments]: Adjust inheritance.

4 years agognu: r-rsubread: Update to 1.34.6.
Ricardo Wurmus [Tue, 6 Aug 2019 13:41:32 +0000 (15:41 +0200)]
gnu: r-rsubread: Update to 1.34.6.

* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.6.

4 years agognu: r-abaenrichment: Update to 1.14.1.
Ricardo Wurmus [Tue, 6 Aug 2019 13:41:26 +0000 (15:41 +0200)]
gnu: r-abaenrichment: Update to 1.14.1.

* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.1.

4 years agognu: r-atacseqqc: Update to 1.8.5.
Ricardo Wurmus [Tue, 6 Aug 2019 13:41:18 +0000 (15:41 +0200)]
gnu: r-atacseqqc: Update to 1.8.5.

* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.5.

4 years agognu: r-genomicinteractions: Update to 1.18.1.
Ricardo Wurmus [Tue, 6 Aug 2019 13:41:10 +0000 (15:41 +0200)]
gnu: r-genomicinteractions: Update to 1.18.1.

* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.1.

4 years agognu: r-chippeakanno: Update to 3.18.2.
Ricardo Wurmus [Tue, 6 Aug 2019 13:40:55 +0000 (15:40 +0200)]
gnu: r-chippeakanno: Update to 3.18.2.

* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.2.

4 years agognu: r-msnid: Update to 1.18.1.
Ricardo Wurmus [Tue, 6 Aug 2019 13:40:46 +0000 (15:40 +0200)]
gnu: r-msnid: Update to 1.18.1.

* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.18.1.

4 years agognu: r-rcas: Update to 1.10.1.
Ricardo Wurmus [Tue, 6 Aug 2019 13:40:38 +0000 (15:40 +0200)]
gnu: r-rcas: Update to 1.10.1.

* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.1.

4 years agognu: r-genomicfeatures: Update to 1.36.4.
Ricardo Wurmus [Tue, 6 Aug 2019 13:40:31 +0000 (15:40 +0200)]
gnu: r-genomicfeatures: Update to 1.36.4.

* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.4.

4 years agognu: r-rtracklayer: Update to 1.44.2.
Ricardo Wurmus [Tue, 6 Aug 2019 13:40:13 +0000 (15:40 +0200)]
gnu: r-rtracklayer: Update to 1.44.2.

* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.2.

4 years agognu: r-summarizedexperiment: Update to 1.14.1.
Ricardo Wurmus [Tue, 6 Aug 2019 13:40:00 +0000 (15:40 +0200)]
gnu: r-summarizedexperiment: Update to 1.14.1.

* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.14.1.

4 years agognu: r-biomart: Update to 2.40.3.
Ricardo Wurmus [Tue, 6 Aug 2019 13:39:54 +0000 (15:39 +0200)]
gnu: r-biomart: Update to 2.40.3.

* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.3.

4 years agognu: r-limma: Update to 3.40.6.
Ricardo Wurmus [Tue, 6 Aug 2019 13:39:48 +0000 (15:39 +0200)]
gnu: r-limma: Update to 3.40.6.

* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.6.

4 years agognu: r-edger: Update to 3.26.6.
Ricardo Wurmus [Tue, 6 Aug 2019 13:39:36 +0000 (15:39 +0200)]
gnu: r-edger: Update to 3.26.6.

* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.6.

4 years agognu: r-xgboost: Update to 0.90.0.2.
Ricardo Wurmus [Tue, 6 Aug 2019 12:50:38 +0000 (14:50 +0200)]
gnu: r-xgboost: Update to 0.90.0.2.

* gnu/packages/cran.scm (r-xgboost): Update to 0.90.0.2.

4 years agognu: r-citr: Update to 0.3.1.
Ricardo Wurmus [Tue, 6 Aug 2019 12:50:22 +0000 (14:50 +0200)]
gnu: r-citr: Update to 0.3.1.

* gnu/packages/cran.scm (r-citr): Update to 0.3.1.
[propagated-inputs]: Remove r-bibtex.

4 years agognu: r-enrichr: Update to 2.0.
Ricardo Wurmus [Tue, 6 Aug 2019 12:50:14 +0000 (14:50 +0200)]
gnu: r-enrichr: Update to 2.0.

* gnu/packages/cran.scm (r-enrichr): Update to 2.0.

4 years agognu: r-dalex: Update to 0.4.4.
Ricardo Wurmus [Tue, 6 Aug 2019 12:50:08 +0000 (14:50 +0200)]
gnu: r-dalex: Update to 0.4.4.

* gnu/packages/cran.scm (r-dalex): Update to 0.4.4.

4 years agognu: r-bookdown: Update to 0.12.
Ricardo Wurmus [Tue, 6 Aug 2019 12:50:03 +0000 (14:50 +0200)]
gnu: r-bookdown: Update to 0.12.

* gnu/packages/cran.scm (r-bookdown): Update to 0.12.

4 years agognu: r-ldheatmap: Update to 0.99-7.
Ricardo Wurmus [Tue, 6 Aug 2019 12:49:49 +0000 (14:49 +0200)]
gnu: r-ldheatmap: Update to 0.99-7.

* gnu/packages/cran.scm (r-ldheatmap): Update to 0.99-7.
[propagated-inputs]: Add r-rcpp.

4 years agognu: r-sf: Update to 0.7-7.
Ricardo Wurmus [Tue, 6 Aug 2019 12:49:41 +0000 (14:49 +0200)]
gnu: r-sf: Update to 0.7-7.

* gnu/packages/cran.scm (r-sf): Update to 0.7-7.

4 years agognu: r-deldir: Update to 0.1-23.
Ricardo Wurmus [Tue, 6 Aug 2019 12:49:36 +0000 (14:49 +0200)]
gnu: r-deldir: Update to 0.1-23.

* gnu/packages/cran.scm (r-deldir): Update to 0.1-23.

4 years agognu: r-classint: Update to 0.4-1.
Ricardo Wurmus [Tue, 6 Aug 2019 12:49:31 +0000 (14:49 +0200)]
gnu: r-classint: Update to 0.4-1.

* gnu/packages/cran.scm (r-classint): Update to 0.4-1.

4 years agognu: r-rematch2: Update to 2.1.0.
Ricardo Wurmus [Tue, 6 Aug 2019 12:49:25 +0000 (14:49 +0200)]
gnu: r-rematch2: Update to 2.1.0.

* gnu/packages/cran.scm (r-rematch2): Update to 2.1.0.

4 years agognu: r-irkernel: Update to 1.0.2.
Ricardo Wurmus [Tue, 6 Aug 2019 12:49:20 +0000 (14:49 +0200)]
gnu: r-irkernel: Update to 1.0.2.

* gnu/packages/cran.scm (r-irkernel): Update to 1.0.2.

4 years agognu: r-lavaan: Update to 0.6-4.
Ricardo Wurmus [Tue, 6 Aug 2019 12:49:14 +0000 (14:49 +0200)]
gnu: r-lavaan: Update to 0.6-4.

* gnu/packages/cran.scm (r-lavaan): Update to 0.6-4.

4 years agognu: r-bayesm: Update to 3.1-3.
Ricardo Wurmus [Tue, 6 Aug 2019 12:49:05 +0000 (14:49 +0200)]
gnu: r-bayesm: Update to 3.1-3.

* gnu/packages/cran.scm (r-bayesm): Update to 3.1-3.

4 years agognu: r-rsvd: Update to 1.0.2.
Ricardo Wurmus [Tue, 6 Aug 2019 12:48:58 +0000 (14:48 +0200)]
gnu: r-rsvd: Update to 1.0.2.

* gnu/packages/cran.scm (r-rsvd): Update to 1.0.2.

4 years agognu: r-future: Update to 1.14.0.
Ricardo Wurmus [Tue, 6 Aug 2019 12:48:52 +0000 (14:48 +0200)]
gnu: r-future: Update to 1.14.0.

* gnu/packages/cran.scm (r-future): Update to 1.14.0.

4 years agognu: r-spatialextremes: Update to 2.0-7.2.
Ricardo Wurmus [Tue, 6 Aug 2019 12:48:47 +0000 (14:48 +0200)]
gnu: r-spatialextremes: Update to 2.0-7.2.

* gnu/packages/cran.scm (r-spatialextremes): Update to 2.0-7.2.

4 years agognu: r-bigrquery: Update to 1.2.0.
Ricardo Wurmus [Tue, 6 Aug 2019 12:48:29 +0000 (14:48 +0200)]
gnu: r-bigrquery: Update to 1.2.0.

* gnu/packages/cran.scm (r-bigrquery): Update to 1.2.0.
[propagated-inputs]: Add r-gargle and r-rlang.

4 years agognu: Add r-gargle.
Ricardo Wurmus [Tue, 6 Aug 2019 12:46:41 +0000 (14:46 +0200)]
gnu: Add r-gargle.

* gnu/packages/cran.scm (r-gargle): New variable.

4 years agognu: r-shades: Update to 1.4.0.
Ricardo Wurmus [Tue, 6 Aug 2019 12:46:31 +0000 (14:46 +0200)]
gnu: r-shades: Update to 1.4.0.

* gnu/packages/cran.scm (r-shades): Update to 1.4.0.

4 years agognu: r-rnifti: Update to 0.11.1.
Ricardo Wurmus [Tue, 6 Aug 2019 12:46:22 +0000 (14:46 +0200)]
gnu: r-rnifti: Update to 0.11.1.

* gnu/packages/cran.scm (r-rnifti): Update to 0.11.1.

4 years agognu: r-flare: Update to 1.6.0.2.
Ricardo Wurmus [Tue, 6 Aug 2019 12:46:01 +0000 (14:46 +0200)]
gnu: r-flare: Update to 1.6.0.2.

* gnu/packages/cran.scm (r-flare): Update to 1.6.0.2.

4 years agognu: r-sparsesvd: Update to 0.2.
Ricardo Wurmus [Tue, 6 Aug 2019 12:45:53 +0000 (14:45 +0200)]
gnu: r-sparsesvd: Update to 0.2.

* gnu/packages/cran.scm (r-sparsesvd): Update to 0.2.

4 years agognu: r-tidytree: Update to 0.2.5.
Ricardo Wurmus [Tue, 6 Aug 2019 12:45:42 +0000 (14:45 +0200)]
gnu: r-tidytree: Update to 0.2.5.

* gnu/packages/cran.scm (r-tidytree): Update to 0.2.5.

4 years agognu: r-rgl: Update to 0.100.26.
Ricardo Wurmus [Tue, 6 Aug 2019 12:45:34 +0000 (14:45 +0200)]
gnu: r-rgl: Update to 0.100.26.

* gnu/packages/cran.scm (r-rgl): Update to 0.100.26.

4 years agognu: r-afex: Update to 0.24-1.
Ricardo Wurmus [Tue, 6 Aug 2019 12:45:28 +0000 (14:45 +0200)]
gnu: r-afex: Update to 0.24-1.

* gnu/packages/cran.scm (r-afex): Update to 0.24-1.

4 years agognu: r-usethis: Update to 1.5.1.
Ricardo Wurmus [Tue, 6 Aug 2019 12:45:21 +0000 (14:45 +0200)]
gnu: r-usethis: Update to 1.5.1.

* gnu/packages/cran.scm (r-usethis): Update to 1.5.1.

4 years agognu: r-sjplot: Update to 2.7.0.
Ricardo Wurmus [Tue, 6 Aug 2019 12:45:08 +0000 (14:45 +0200)]
gnu: r-sjplot: Update to 2.7.0.

* gnu/packages/cran.scm (r-sjplot): Update to 2.7.0.
[propagated-inputs]: Add r-ggrepel.

4 years agognu: r-ggeffects: Update to 0.11.0.
Ricardo Wurmus [Tue, 6 Aug 2019 12:44:51 +0000 (14:44 +0200)]
gnu: r-ggeffects: Update to 0.11.0.

* gnu/packages/cran.scm (r-ggeffects): Update to 0.11.0.

4 years agognu: r-performance: Update to 0.3.0.
Ricardo Wurmus [Tue, 6 Aug 2019 12:44:46 +0000 (14:44 +0200)]
gnu: r-performance: Update to 0.3.0.

* gnu/packages/cran.scm (r-performance): Update to 0.3.0.

4 years agognu: r-emmeans: Update to 1.4.
Ricardo Wurmus [Tue, 6 Aug 2019 12:44:40 +0000 (14:44 +0200)]
gnu: r-emmeans: Update to 1.4.

* gnu/packages/cran.scm (r-emmeans): Update to 1.4.

4 years agognu: r-magick: Update to 2.1.
Ricardo Wurmus [Tue, 6 Aug 2019 12:44:33 +0000 (14:44 +0200)]
gnu: r-magick: Update to 2.1.

* gnu/packages/cran.scm (r-magick): Update to 2.1.

4 years agognu: r-raster: Update to 2.9-23.
Ricardo Wurmus [Tue, 6 Aug 2019 12:44:27 +0000 (14:44 +0200)]
gnu: r-raster: Update to 2.9-23.

* gnu/packages/cran.scm (r-raster): Update to 2.9-23.

4 years agognu: r-proc: Update to 1.15.3.
Ricardo Wurmus [Tue, 6 Aug 2019 12:44:21 +0000 (14:44 +0200)]
gnu: r-proc: Update to 1.15.3.

* gnu/packages/cran.scm (r-proc): Update to 1.15.3.

4 years agognu: r-insight: Update to 0.4.1.
Ricardo Wurmus [Tue, 6 Aug 2019 12:44:15 +0000 (14:44 +0200)]
gnu: r-insight: Update to 0.4.1.

* gnu/packages/cran.scm (r-insight): Update to 0.4.1.

4 years agognu: r-abn: Update to 2.1.
Ricardo Wurmus [Tue, 6 Aug 2019 12:43:54 +0000 (14:43 +0200)]
gnu: r-abn: Update to 2.1.

* gnu/packages/cran.scm (r-abn): Update to 2.1.
[propagated-inputs]: Remove r-cairo.

4 years agognu: r-factominer: Update to 1.42.
Ricardo Wurmus [Tue, 6 Aug 2019 12:43:45 +0000 (14:43 +0200)]
gnu: r-factominer: Update to 1.42.

* gnu/packages/cran.scm (r-factominer): Update to 1.42.

4 years agognu: r-reticulate: Update to 1.13.
Ricardo Wurmus [Tue, 6 Aug 2019 12:43:39 +0000 (14:43 +0200)]
gnu: r-reticulate: Update to 1.13.

* gnu/packages/cran.scm (r-reticulate): Update to 1.13.

4 years agognu: r-dosnow: Update to 1.0.18.
Ricardo Wurmus [Tue, 6 Aug 2019 12:43:32 +0000 (14:43 +0200)]
gnu: r-dosnow: Update to 1.0.18.

* gnu/packages/cran.scm (r-dosnow): Update to 1.0.18.

4 years agognu: r-zip: Update to 2.0.3.
Ricardo Wurmus [Tue, 6 Aug 2019 12:43:24 +0000 (14:43 +0200)]
gnu: r-zip: Update to 2.0.3.

* gnu/packages/cran.scm (r-zip): Update to 2.0.3.

4 years agognu: r-radiant-data: Update to 1.0.0.
Ricardo Wurmus [Tue, 6 Aug 2019 12:43:18 +0000 (14:43 +0200)]
gnu: r-radiant-data: Update to 1.0.0.

* gnu/packages/cran.scm (r-radiant-data): Update to 1.0.0.

4 years agognu: r-shinyace: Update to 0.4.0.
Ricardo Wurmus [Tue, 6 Aug 2019 12:43:09 +0000 (14:43 +0200)]
gnu: r-shinyace: Update to 0.4.0.

* gnu/packages/cran.scm (r-shinyace): Update to 0.4.0.

4 years agognu: r-pillar: Update to 1.4.2.
Ricardo Wurmus [Tue, 6 Aug 2019 12:43:02 +0000 (14:43 +0200)]
gnu: r-pillar: Update to 1.4.2.

* gnu/packages/cran.scm (r-pillar): Update to 1.4.2.

4 years agognu: r-vctrs: Update to 0.2.0.
Ricardo Wurmus [Tue, 6 Aug 2019 12:42:49 +0000 (14:42 +0200)]
gnu: r-vctrs: Update to 0.2.0.

* gnu/packages/cran.scm (r-vctrs): Update to 0.2.0.
[propagated-inputs]: Add r-ellipsis.

4 years agognu: r-processx: Update to 3.4.1.
Ricardo Wurmus [Tue, 6 Aug 2019 12:42:43 +0000 (14:42 +0200)]
gnu: r-processx: Update to 3.4.1.

* gnu/packages/cran.scm (r-processx): Update to 3.4.1.

4 years agognu: r-vioplot: Update to 0.3.2.
Ricardo Wurmus [Tue, 6 Aug 2019 12:42:36 +0000 (14:42 +0200)]
gnu: r-vioplot: Update to 0.3.2.

* gnu/packages/cran.scm (r-vioplot): Update to 0.3.2.

4 years agognu: r-hardyweinberg: Update to 1.6.3.
Ricardo Wurmus [Tue, 6 Aug 2019 12:42:29 +0000 (14:42 +0200)]
gnu: r-hardyweinberg: Update to 1.6.3.

* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.3.

4 years agognu: r-mice: Update to 3.6.0.
Ricardo Wurmus [Tue, 6 Aug 2019 12:42:21 +0000 (14:42 +0200)]
gnu: r-mice: Update to 3.6.0.

* gnu/packages/cran.scm (r-mice): Update to 3.6.0.

4 years agognu: r-jomo: Update to 2.6-9.
Ricardo Wurmus [Tue, 6 Aug 2019 12:42:12 +0000 (14:42 +0200)]
gnu: r-jomo: Update to 2.6-9.

* gnu/packages/cran.scm (r-jomo): Update to 2.6-9.

4 years agognu: r-recipes: Update to 0.1.6.
Ricardo Wurmus [Tue, 6 Aug 2019 12:41:51 +0000 (14:41 +0200)]
gnu: r-recipes: Update to 0.1.6.

* gnu/packages/cran.scm (r-recipes): Update to 0.1.6.
[propagated-inputs]: Remove r-rcpproll.