jackhill/guix/guix.git
4 years agofile-systems: Add a 'file-system-device->string' procedure.
Maxim Cournoyer [Wed, 12 Feb 2020 04:56:45 +0000 (23:56 -0500)]
file-systems: Add a 'file-system-device->string' procedure.

* gnu/system/file-systems.scm (file-system-device->string): New procedure.
* gnu/system.scm (bootable-kernel-arguments): Use it.
* gnu/system/vm.scm (operating-system-uuid): Likewise.
* guix/scripts/system.scm (display-system-generation): Likewise.

4 years agolinux-boot: Ensure volatile root is mounted read-only.
Maxim Cournoyer [Tue, 11 Feb 2020 17:57:29 +0000 (12:57 -0500)]
linux-boot: Ensure volatile root is mounted read-only.

* gnu/build/linux-boot.scm (mount-root-file-system): Ensure MS_RDONLY is
present among the root file system flags when VOLATILE-ROOT? is #t.

4 years agognu: mu: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 21:25:10 +0000 (22:25 +0100)]
gnu: mu: Use HTTPS home page.

* gnu/packages/mail.scm (mu)[home-page]: Use HTTPS.

4 years agognu: yadifa: Use HTTPS home page.
Tobias Geerinckx-Rice [Sun, 19 Jan 2020 00:18:16 +0000 (01:18 +0100)]
gnu: yadifa: Use HTTPS home page.

* gnu/packages/dns.scm (yadifa)[home-page]: Use HTTPS.

4 years agognu: python2-py2neo: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 21:38:56 +0000 (22:38 +0100)]
gnu: python2-py2neo: Use HTTPS home page.

* gnu/packages/databases.scm (python2-py2neo)[home-page]: Use HTTPS.

4 years agognu: python-contextlib2: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 21:34:35 +0000 (22:34 +0100)]
gnu: python-contextlib2: Use HTTPS home page.

* gnu/packages/python-xyz.scm (python-contextlib2)[home-page]: Use HTTPS.

4 years agognu: python-flask-principal: Update home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 21:29:43 +0000 (22:29 +0100)]
gnu: python-flask-principal: Update home page.

* gnu/packages/python-web.scm (python-flask-principal)[home-page]:
Follow (HTTPS) redirection.

4 years agognu: python-gipc: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 21:25:23 +0000 (22:25 +0100)]
gnu: python-gipc: Use HTTPS home page.

* gnu/packages/python-xyz.scm (python-gipc)[home-page]: Use HTTPS.

4 years agognu: python-seaborn: Update & use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 20:54:27 +0000 (21:54 +0100)]
gnu: python-seaborn: Update & use HTTPS home page.

* gnu/packages/python-xyz.scm (python-seaborn)[home-page]: Follow
redirection, but use HTTPS.

4 years agognu: python-vobject: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 21:08:27 +0000 (22:08 +0100)]
gnu: python-vobject: Use HTTPS home page.

* gnu/packages/python-xyz.scm (python-vobject)[home-page]: Use HTTPS.

4 years agognu: python-activepapers: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 21:13:45 +0000 (22:13 +0100)]
gnu: python-activepapers: Use HTTPS home page.

* gnu/packages/python-xyz.scm (python-activepapers)[home-page]:
Use HTTPS.

4 years agognu: tome4: Update to 1.6.7.
Tobias Geerinckx-Rice [Tue, 3 Mar 2020 03:46:19 +0000 (04:46 +0100)]
gnu: tome4: Update to 1.6.7.

* gnu/packages/games.scm (tome4): Update to 1.6.7.

4 years agognu: shotwell: Update to 0.30.8.
Tobias Geerinckx-Rice [Tue, 3 Mar 2020 03:33:21 +0000 (04:33 +0100)]
gnu: shotwell: Update to 0.30.8.

* gnu/packages/gnome.scm (shotwell): Update to 0.30.8.

4 years agognu: gmime: Update to 3.2.6.
Tobias Geerinckx-Rice [Tue, 3 Mar 2020 03:13:59 +0000 (04:13 +0100)]
gnu: gmime: Update to 3.2.6.

* gnu/packages/mail.scm (gmime): Update to 3.2.6.

4 years agognu: liblo: Update to 0.31.
Tobias Geerinckx-Rice [Tue, 3 Mar 2020 02:28:17 +0000 (03:28 +0100)]
gnu: liblo: Update to 0.31.

* gnu/packages/audio.scm (liblo): Update to 0.31.

4 years agognu: fish: Don't use NAME in source URI.
Tobias Geerinckx-Rice [Tue, 3 Mar 2020 02:18:32 +0000 (03:18 +0100)]
gnu: fish: Don't use NAME in source URI.

* gnu/packages/shells.scm (fish)[source]: Hard-code NAME.

4 years agognu: gptfdisk: Update to 1.0.5.
Tobias Geerinckx-Rice [Tue, 3 Mar 2020 03:03:47 +0000 (04:03 +0100)]
gnu: gptfdisk: Update to 1.0.5.

* gnu/packages/disk.scm (gptfdisk): Update to 1.0.5.
[source]: Hard-code NAME.
[arguments]: Add ‘fix-include-directory’ phase.

4 years agognu: amtk: Update to 5.0.2.
Tobias Geerinckx-Rice [Tue, 3 Mar 2020 03:26:24 +0000 (04:26 +0100)]
gnu: amtk: Update to 5.0.2.

* gnu/packages/gnome.scm (amtk): Update to 5.0.2.

4 years agognu: notmuch: Extend test time-out.
Tobias Geerinckx-Rice [Tue, 3 Mar 2020 03:58:27 +0000 (04:58 +0100)]
gnu: notmuch: Extend test time-out.

* gnu/packages/mail.scm (notmuch)[arguments]:
Add NOTMUCH_TEST_TIMEOUT=1h make flag.

4 years agognu: oil-shell: Update to 0.7.0.
Tobias Geerinckx-Rice [Tue, 3 Mar 2020 03:04:07 +0000 (04:04 +0100)]
gnu: oil-shell: Update to 0.7.0.

* gnu/packages/shells.scm (oil-shell): Update to 0.7.0.

4 years agognu: serd: Update to 0.30.2.
Tobias Geerinckx-Rice [Tue, 3 Mar 2020 02:23:38 +0000 (03:23 +0100)]
gnu: serd: Update to 0.30.2.

* gnu/packages/rdf.scm (serd): Update to 0.30.2.

4 years agognu: python-pyudev: Update to 0.22.0.
Tobias Geerinckx-Rice [Tue, 3 Mar 2020 01:19:13 +0000 (02:19 +0100)]
gnu: python-pyudev: Update to 0.22.0.

* gnu/packages/admin.scm (python-pyudev): Update to 0.22.0.

4 years agognu: Go: Update to 1.13.8.
Leo Famulari [Mon, 2 Mar 2020 19:48:04 +0000 (14:48 -0500)]
gnu: Go: Update to 1.13.8.

* gnu/packages/golang.scm (go-1.13): Update to 1.13.8.

4 years agognu: Add system test for CUPS.
Marius Bakke [Mon, 2 Mar 2020 22:38:04 +0000 (23:38 +0100)]
gnu: Add system test for CUPS.

* gnu/tests/cups.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.

4 years agognu: libgc: Fix replacement inheritance.
Marius Bakke [Mon, 2 Mar 2020 22:08:13 +0000 (23:08 +0100)]
gnu: libgc: Fix replacement inheritance.

* gnu/packages/bdw-gc.scm (libgc-8.0): Do not use PACKAGE/INHERIT, because it
does not make sense to inherit any replacements of LIBGC.
(libgc/back-pointers): Use PACKAGE/INHERIT.

4 years agognu: Add r-zseq.
Ricardo Wurmus [Mon, 2 Mar 2020 22:04:35 +0000 (23:04 +0100)]
gnu: Add r-zseq.

* gnu/packages/cran.scm (r-zseq): New variable.

4 years agognu: Add r-ztype.
Ricardo Wurmus [Mon, 2 Mar 2020 22:04:30 +0000 (23:04 +0100)]
gnu: Add r-ztype.

* gnu/packages/cran.scm (r-ztype): New variable.

4 years agognu: Add r-zvcv.
Ricardo Wurmus [Mon, 2 Mar 2020 22:02:54 +0000 (23:02 +0100)]
gnu: Add r-zvcv.

* gnu/packages/cran.scm (r-zvcv): New variable.

4 years agognu: Add r-zyp.
Ricardo Wurmus [Mon, 2 Mar 2020 22:02:46 +0000 (23:02 +0100)]
gnu: Add r-zyp.

* gnu/packages/cran.scm (r-zyp): New variable.

4 years agognu: Add r-kendall.
Ricardo Wurmus [Mon, 2 Mar 2020 22:02:36 +0000 (23:02 +0100)]
gnu: Add r-kendall.

* gnu/packages/cran.scm (r-kendall): New variable.

4 years agognu: python-smmap: Update to version 3.0.1, deprecate python-smmap2.
Maxim Cournoyer [Mon, 2 Mar 2020 20:33:35 +0000 (15:33 -0500)]
gnu: python-smmap: Update to version 3.0.1, deprecate python-smmap2.

* gnu/packages/python-xyz.scm (python-smmap): Rename from python-smmap2, and
update to version 3.0.1.
(python-smmap2, python2-smmap2): Preserve original bindings, marked as
deprecated.
* gnu/packages/version-control.scm (python-gitdb)[propagated-inputs]: Depend
on the new python-smmap package.

4 years agognu: python-gitpython: Update to 3.1.0.
Maxim Cournoyer [Mon, 2 Mar 2020 20:24:39 +0000 (15:24 -0500)]
gnu: python-gitpython: Update to 3.1.0.

* gnu/packages/version-control.scm (python-gitpython): Update to 3.1.0.

4 years agognu: python-gitdb: Update to 4.0.2.
Maxim Cournoyer [Mon, 2 Mar 2020 20:20:30 +0000 (15:20 -0500)]
gnu: python-gitdb: Update to 4.0.2.

* gnu/packages/version-control.scm (python-gitdb): Update to 4.0.2.
[source]: Correct the PyPI URL to refer to the actual gitdb package, not a
mirror.  This mirror had a problematic setup.py install requirement that
required gitdb>=4.0.1, which would cause run time errors when using snakemake.

4 years agognu: python-pyyaml: Update to 5.3.
Maxim Cournoyer [Mon, 2 Mar 2020 19:19:27 +0000 (14:19 -0500)]
gnu: python-pyyaml: Update to 5.3.

* gnu/packages/python-xyz.scm (python-pyyaml): Update to 5.3.

4 years agognu: python-xenon: Update to 0.7.0.
Maxim Cournoyer [Mon, 2 Mar 2020 19:13:17 +0000 (14:13 -0500)]
gnu: python-xenon: Update to 0.7.0.

* gnu/packages/python-xyz.scm (python-xenon): Update to 0.7.0.
[arguments]: Set #:tests? to #f to disable test suite.

4 years agognu: python-radon: Update to 4.1.0.
Maxim Cournoyer [Mon, 2 Mar 2020 18:45:25 +0000 (13:45 -0500)]
gnu: python-radon: Update to 4.1.0.

* gnu/packages/python-xyz.scm (python-radon): Update to 4.1.0.

4 years agognu: python-colorama: Update to 0.4.3.
Maxim Cournoyer [Mon, 2 Mar 2020 18:45:05 +0000 (13:45 -0500)]
gnu: python-colorama: Update to 0.4.3.

* gnu/packages/python-xyz.scm (python-colorama): Update to 0.4.3.

4 years agognu: Add python-wget.
Maxim Cournoyer [Mon, 2 Mar 2020 15:52:42 +0000 (10:52 -0500)]
gnu: Add python-wget.

* gnu/packages/python-xyz.scm (python-wget): New variable.

4 years agognu: emacs-windower: Fix description.
Nicolas Goaziou [Mon, 2 Mar 2020 21:59:57 +0000 (22:59 +0100)]
gnu: emacs-windower: Fix description.

* gnu/packages/emacs-xyz.scm (emacs-windower): Fix Texinfo code for lists in
description.

4 years agognu: r-forcats: Update to 0.5.0.
Ricardo Wurmus [Mon, 2 Mar 2020 20:50:12 +0000 (21:50 +0100)]
gnu: r-forcats: Update to 0.5.0.

* gnu/packages/statistics.scm (r-forcats): Update to 0.5.0.

4 years agognu: r-testthat: Update to 2.3.2.
Ricardo Wurmus [Mon, 2 Mar 2020 20:50:07 +0000 (21:50 +0100)]
gnu: r-testthat: Update to 2.3.2.

* gnu/packages/statistics.scm (r-testthat): Update to 2.3.2.

4 years agognu: r-openmx: Update to 2.17.3.
Ricardo Wurmus [Mon, 2 Mar 2020 20:50:01 +0000 (21:50 +0100)]
gnu: r-openmx: Update to 2.17.3.

* gnu/packages/cran.scm (r-openmx): Update to 2.17.3.

4 years agognu: r-summarytools: Update to 0.9.6.
Ricardo Wurmus [Mon, 2 Mar 2020 20:49:54 +0000 (21:49 +0100)]
gnu: r-summarytools: Update to 0.9.6.

* gnu/packages/cran.scm (r-summarytools): Update to 0.9.6.

4 years agognu: r-officer: Update to 0.3.7.
Ricardo Wurmus [Mon, 2 Mar 2020 20:49:25 +0000 (21:49 +0100)]
gnu: r-officer: Update to 0.3.7.

* gnu/packages/cran.scm (r-officer): Update to 0.3.7.
[propagated-inputs]: Remove r-base64enc, r-htmltools, r-rcpp, and r-rlang.

4 years agognu: r-seqminer: Update to 8.0.
Ricardo Wurmus [Mon, 2 Mar 2020 20:49:15 +0000 (21:49 +0100)]
gnu: r-seqminer: Update to 8.0.

* gnu/packages/bioinformatics.scm (r-seqminer): Update to 8.0.

4 years agognu: ecl-clunit: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 20:53:50 +0000 (21:53 +0100)]
gnu: ecl-clunit: Use HTTPS home page.

* gnu/packages/lisp-xyz.scm (ecl-clunit)[home-page]: Use HTTPS.

4 years agognu: mapnik: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 20:52:08 +0000 (21:52 +0100)]
gnu: mapnik: Use HTTPS home page.

* gnu/packages/geo.scm (mapnik)[home-page]: Use HTTPS.

4 years agognu: python-rq: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 20:51:57 +0000 (21:51 +0100)]
gnu: python-rq: Use HTTPS home page.

* gnu/packages/databases.scm (python-rq)[home-page]: Use HTTPS.

4 years agognu: java-plexus-interpolation: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 20:51:34 +0000 (21:51 +0100)]
gnu: java-plexus-interpolation: Use HTTPS home page.

* gnu/packages/java.scm (java-plexus-interpolation)[home-page]: Use HTTPS.

4 years agognu: amsynth: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 20:50:29 +0000 (21:50 +0100)]
gnu: amsynth: Use HTTPS home page.

* gnu/packages/music.scm (amsynth)[home-page]: Use HTTPS.

4 years agognu: pootle: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 20:48:59 +0000 (21:48 +0100)]
gnu: pootle: Use HTTPS home page.

* gnu/packages/django.scm (pootle)[home-page]: Use HTTPS.

4 years agognu: muse-sequencer: Update home page.
Tobias Geerinckx-Rice [Sat, 18 Jan 2020 20:46:54 +0000 (21:46 +0100)]
gnu: muse-sequencer: Update home page.

* gnu/packages/music.scm (muse-sequencer)[home-page]: Follow (HTTPS)
redirection.

4 years agognu: opensmtpd: Support ECDSA certificates.
Tobias Geerinckx-Rice [Mon, 2 Mar 2020 20:38:29 +0000 (21:38 +0100)]
gnu: opensmtpd: Support ECDSA certificates.

The required libressl version is now stable and more featureful than
openssl.

* gnu/packages/mail.scm (opensmtpd)[inputs]: Replace openssl with libressl.

4 years agognu: libressl: Update to 3.0.2.
Tobias Geerinckx-Rice [Mon, 2 Mar 2020 20:37:30 +0000 (21:37 +0100)]
gnu: libressl: Update to 3.0.2.

* gnu/packages/tls.scm (libressl): Update to 3.0.2.

4 years agognu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.10.0.
Tobias Geerinckx-Rice [Mon, 2 Mar 2020 20:30:33 +0000 (21:30 +0100)]
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.10.0.

* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.

4 years agognu: emacs-modus-themes: Update to 0.6.0.
Nicolas Goaziou [Mon, 2 Mar 2020 20:37:15 +0000 (21:37 +0100)]
gnu: emacs-modus-themes: Update to 0.6.0.

* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 0.6.0.

4 years agognu: Syncthing: Fix installation of the 'util' package output.
Leo Famulari [Mon, 2 Mar 2020 20:27:34 +0000 (15:27 -0500)]
gnu: Syncthing: Fix installation of the 'util' package output.

* gnu/packages/syncthing.scm (syncthing)[arguments]: Adjust the 'install' phase.

4 years agognu: librsvg-next: Fix cargo dependency.
Efraim Flashner [Mon, 2 Mar 2020 20:11:16 +0000 (22:11 +0200)]
gnu: librsvg-next: Fix cargo dependency.

* gnu/packages/gnome.scm (librsvg-next-source): Don't hardcode patch
version of cargo inputs.

4 years agognu: rust-diff-0.1: Update to 0.1.12.
Efraim Flashner [Mon, 2 Mar 2020 20:09:04 +0000 (22:09 +0200)]
gnu: rust-diff-0.1: Update to 0.1.12.

* gnu/packages/crates-io.scm (rust-diff-0.1): Update to 0.1.12.
[arguments]: Replace rust-quickcheck-0.8 with 0.9 in
cargo-development-inputs.

4 years agognu: rust-defmac-0.2: Don't skip build.
Efraim Flashner [Mon, 2 Mar 2020 19:58:22 +0000 (21:58 +0200)]
gnu: rust-defmac-0.2: Don't skip build.

* gnu/packages/crates-io.scm (rust-defmac-0.2)[arguments]: Don't skip
build.

4 years agognu: rust-datetime-0.4: Don't skip build.
Efraim Flashner [Mon, 2 Mar 2020 19:56:54 +0000 (21:56 +0200)]
gnu: rust-datetime-0.4: Don't skip build.

* gnu/packages/crates-io.scm (rust-datetime-0.4)[arguments]: Don't skip
build. Add rust-regex-0.1 to cargo-development-inputs.

4 years agognu: rust-constant-time-eq-0.1: Don't skip build.
Efraim Flashner [Mon, 2 Mar 2020 19:48:02 +0000 (21:48 +0200)]
gnu: rust-constant-time-eq-0.1: Don't skip build.

* gnu/packages/crates-io.scm (rust-constant-time-eq-0.1)[arguments]:
Don't skip build.

4 years agognu: debootstrap: Update to 1.0.119.
Vincent Legoll [Sun, 1 Mar 2020 17:01:04 +0000 (18:01 +0100)]
gnu: debootstrap: Update to 1.0.119.

* gnu/packages/debian.scm (debootstrap): Update to 1.0.119.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: vim: Update to 8.2.0343.
Efraim Flashner [Mon, 2 Mar 2020 08:39:51 +0000 (10:39 +0200)]
gnu: vim: Update to 8.2.0343.

* gnu/packages/vim.scm (vim): Update to 8.2.0343.

4 years agognu: r-multiassayexperiment: Update to 1.12.3.
Ricardo Wurmus [Sun, 1 Mar 2020 22:38:33 +0000 (23:38 +0100)]
gnu: r-multiassayexperiment: Update to 1.12.3.

* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.

4 years agognu: r-cicero: Update to 1.4.2.
Ricardo Wurmus [Sun, 1 Mar 2020 22:38:26 +0000 (23:38 +0100)]
gnu: r-cicero: Update to 1.4.2.

* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.

4 years agognu: r-mlinterfaces: Update to 1.66.4.
Ricardo Wurmus [Sun, 1 Mar 2020 22:38:19 +0000 (23:38 +0100)]
gnu: r-mlinterfaces: Update to 1.66.4.

* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.

4 years agognu: r-biocneighbors: Update to 1.4.2.
Ricardo Wurmus [Sun, 1 Mar 2020 22:38:12 +0000 (23:38 +0100)]
gnu: r-biocneighbors: Update to 1.4.2.

* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.

4 years agognu: r-chippeakanno: Update to 3.20.1.
Ricardo Wurmus [Sun, 1 Mar 2020 22:38:06 +0000 (23:38 +0100)]
gnu: r-chippeakanno: Update to 3.20.1.

* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.

4 years agognu: r-hdf5array: Update to 1.14.3.
Ricardo Wurmus [Sun, 1 Mar 2020 22:37:58 +0000 (23:37 +0100)]
gnu: r-hdf5array: Update to 1.14.3.

* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.3.

4 years agognu: r-rsamtools: Update to 2.2.3.
Ricardo Wurmus [Sun, 1 Mar 2020 22:37:52 +0000 (23:37 +0100)]
gnu: r-rsamtools: Update to 2.2.3.

* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.3.

4 years agognu: r-edger: Update to 3.28.1.
Ricardo Wurmus [Sun, 1 Mar 2020 22:37:40 +0000 (23:37 +0100)]
gnu: r-edger: Update to 3.28.1.

* gnu/packages/bioinformatics.scm (r-edger): Update to 3.28.1.

4 years agognu: gwl: Update to 0.2.1.
Ricardo Wurmus [Sun, 1 Mar 2020 21:56:45 +0000 (22:56 +0100)]
gnu: gwl: Update to 0.2.1.

* gnu/packages/package-management.scm (gwl): Update to 0.2.1.
[arguments]: Add phase "fix-tests".

4 years agognu: r-nloptr: Update to 1.2.2.
Ricardo Wurmus [Sun, 1 Mar 2020 21:56:35 +0000 (22:56 +0100)]
gnu: r-nloptr: Update to 1.2.2.

* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.2.

4 years agognu: r-gplots: Update to 3.0.3.
Ricardo Wurmus [Sun, 1 Mar 2020 21:56:27 +0000 (22:56 +0100)]
gnu: r-gplots: Update to 3.0.3.

* gnu/packages/statistics.scm (r-gplots): Update to 3.0.3.

4 years agognu: r-mvtnorm: Update to 1.1-0.
Ricardo Wurmus [Sun, 1 Mar 2020 21:56:20 +0000 (22:56 +0100)]
gnu: r-mvtnorm: Update to 1.1-0.

* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-0.

4 years agognu: r-rlang: Update to 0.4.5.
Ricardo Wurmus [Sun, 1 Mar 2020 21:56:12 +0000 (22:56 +0100)]
gnu: r-rlang: Update to 0.4.5.

* gnu/packages/statistics.scm (r-rlang): Update to 0.4.5.

4 years agognu: r-digest: Update to 0.6.25.
Ricardo Wurmus [Sun, 1 Mar 2020 21:55:47 +0000 (22:55 +0100)]
gnu: r-digest: Update to 0.6.25.

* gnu/packages/statistics.scm (r-digest): Update to 0.6.25.

4 years agognu: r-nnet: Update to 7.3-13.
Ricardo Wurmus [Sun, 1 Mar 2020 21:55:14 +0000 (22:55 +0100)]
gnu: r-nnet: Update to 7.3-13.

* gnu/packages/statistics.scm (r-nnet): Update to 7.3-13.

4 years agognu: r-seurat: Update to 3.1.4.
Ricardo Wurmus [Sun, 1 Mar 2020 21:54:50 +0000 (22:54 +0100)]
gnu: r-seurat: Update to 3.1.4.

* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.4.
[propagated-inputs]: Add r-patchwork.

4 years agognu: r-wgcna: Update to 1.69.
Ricardo Wurmus [Sun, 1 Mar 2020 21:54:28 +0000 (22:54 +0100)]
gnu: r-wgcna: Update to 1.69.

* gnu/packages/cran.scm (r-wgcna): Update to 1.69.
[propagated-inputs]: Remove r-robust.

4 years agognu: r-quanteda: Update to 2.0.0.
Ricardo Wurmus [Sun, 1 Mar 2020 21:53:33 +0000 (22:53 +0100)]
gnu: r-quanteda: Update to 2.0.0.

* gnu/packages/cran.scm (r-quanteda): Update to 2.0.0.
[propagated-inputs]: Remove r-lubridate, r-rspectra, and r-spacyr; add
r-jsonlite.

4 years agognu: r-gdina: Update to 2.7.9.
Ricardo Wurmus [Sun, 1 Mar 2020 21:52:59 +0000 (22:52 +0100)]
gnu: r-gdina: Update to 2.7.9.

* gnu/packages/cran.scm (r-gdina): Update to 2.7.9.

4 years agognu: r-subplex: Update to 1.6.
Ricardo Wurmus [Sun, 1 Mar 2020 21:52:37 +0000 (22:52 +0100)]
gnu: r-subplex: Update to 1.6.

* gnu/packages/cran.scm (r-subplex): Update to 1.6.

4 years agognu: r-rpf: Update to 1.0.3.
Ricardo Wurmus [Sun, 1 Mar 2020 21:52:22 +0000 (22:52 +0100)]
gnu: r-rpf: Update to 1.0.3.

* gnu/packages/cran.scm (r-rpf): Update to 1.0.3.

4 years agognu: r-dalex: Update to 1.0.1.
Ricardo Wurmus [Sun, 1 Mar 2020 21:51:49 +0000 (22:51 +0100)]
gnu: r-dalex: Update to 1.0.1.

* gnu/packages/cran.scm (r-dalex): Update to 1.0.1.

4 years agognu: r-styler: Update to 1.3.2.
Ricardo Wurmus [Sun, 1 Mar 2020 21:51:24 +0000 (22:51 +0100)]
gnu: r-styler: Update to 1.3.2.

* gnu/packages/cran.scm (r-styler): Update to 1.3.2.

4 years agognu: r-gridgraphics: Update to 0.5-0.
Ricardo Wurmus [Sun, 1 Mar 2020 21:50:51 +0000 (22:50 +0100)]
gnu: r-gridgraphics: Update to 0.5-0.

* gnu/packages/cran.scm (r-gridgraphics): Update to 0.5-0.

4 years agognu: r-protviz: Update to 0.6.3.
Ricardo Wurmus [Sun, 1 Mar 2020 21:50:40 +0000 (22:50 +0100)]
gnu: r-protviz: Update to 0.6.3.

* gnu/packages/cran.scm (r-protviz): Update to 0.6.3.

4 years agognu: r-rvcheck: Update to 0.1.8.
Ricardo Wurmus [Sun, 1 Mar 2020 21:50:28 +0000 (22:50 +0100)]
gnu: r-rvcheck: Update to 0.1.8.

* gnu/packages/cran.scm (r-rvcheck): Update to 0.1.8.

4 years agognu: r-rcppannoy: Update to 0.0.15.
Ricardo Wurmus [Sun, 1 Mar 2020 21:50:17 +0000 (22:50 +0100)]
gnu: r-rcppannoy: Update to 0.0.15.

* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.15.

4 years agognu: r-mvabund: Update to 4.1.3.
Ricardo Wurmus [Sun, 1 Mar 2020 21:50:06 +0000 (22:50 +0100)]
gnu: r-mvabund: Update to 4.1.3.

* gnu/packages/cran.scm (r-mvabund): Update to 4.1.3.

4 years agognu: r-manipulatewidget: Update to 0.10.1.
Ricardo Wurmus [Sun, 1 Mar 2020 21:49:56 +0000 (22:49 +0100)]
gnu: r-manipulatewidget: Update to 0.10.1.

* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.10.1.

4 years agognu: r-effectsize: Update to 0.2.0.
Ricardo Wurmus [Sun, 1 Mar 2020 21:49:47 +0000 (22:49 +0100)]
gnu: r-effectsize: Update to 0.2.0.

* gnu/packages/cran.scm (r-effectsize): Update to 0.2.0.

4 years agognu: r-factominer: Update to 2.3.
Ricardo Wurmus [Sun, 1 Mar 2020 21:49:33 +0000 (22:49 +0100)]
gnu: r-factominer: Update to 2.3.

* gnu/packages/cran.scm (r-factominer): Update to 2.3.

4 years agognu: r-tinytex: Update to 0.20.
Ricardo Wurmus [Sun, 1 Mar 2020 21:49:20 +0000 (22:49 +0100)]
gnu: r-tinytex: Update to 0.20.

* gnu/packages/cran.scm (r-tinytex): Update to 0.20.

4 years agognu: r-uuid: Update to 0.1-4.
Ricardo Wurmus [Sun, 1 Mar 2020 21:49:11 +0000 (22:49 +0100)]
gnu: r-uuid: Update to 0.1-4.

* gnu/packages/cran.scm (r-uuid): Update to 0.1-4.

4 years agognu: r-broom: Update to 0.5.5.
Ricardo Wurmus [Sun, 1 Mar 2020 21:48:59 +0000 (22:48 +0100)]
gnu: r-broom: Update to 0.5.5.

* gnu/packages/cran.scm (r-broom): Update to 0.5.5.

4 years agognu: r-cli: Update to 2.0.2.
Ricardo Wurmus [Sun, 1 Mar 2020 21:48:19 +0000 (22:48 +0100)]
gnu: r-cli: Update to 2.0.2.

* gnu/packages/cran.scm (r-cli): Update to 2.0.2.

4 years agognu: r-sp: Update to 1.4-1.
Ricardo Wurmus [Sun, 1 Mar 2020 21:47:53 +0000 (22:47 +0100)]
gnu: r-sp: Update to 1.4-1.

* gnu/packages/cran.scm (r-sp): Update to 1.4-1.