jackhill/guix/guix.git
4 years agognu: wireshark: Update to 3.2.0.
Nicolas Goaziou [Mon, 30 Dec 2019 00:28:36 +0000 (01:28 +0100)]
gnu: wireshark: Update to 3.2.0.

* gnu/packages/networking.scm (wireshark): Update to 3.2.0.

4 years agognu: snap: Update to 5.4.0.
Nicolas Goaziou [Sun, 29 Dec 2019 23:08:45 +0000 (00:08 +0100)]
gnu: snap: Update to 5.4.0.

* gnu/packages/education.scm (snap): Update to 5.4.0.

4 years agognu: fet: Update to 5.42.1.
Nicolas Goaziou [Sun, 29 Dec 2019 22:20:17 +0000 (23:20 +0100)]
gnu: fet: Update to 5.42.1.

* gnu/packages/education.scm (fet): Update to 5.42.1.

4 years agognu: mame: Update to 0.217.
Nicolas Goaziou [Sun, 29 Dec 2019 21:58:25 +0000 (22:58 +0100)]
gnu: mame: Update to 0.217.

* gnu/packages/emulators.scm (mame): Update to 0.217.

4 years agognu: guile-bytestructures: Fix cross-compilation.
Mathieu Othacehe [Sun, 29 Dec 2019 20:24:10 +0000 (21:24 +0100)]
gnu: guile-bytestructures: Fix cross-compilation.

* gnu/packages/guile.scm (guile-bytestructures)[native-inputs]: Add guile to
fix cross-compilation.

4 years agognu: guile-bytestructures: Remove guild warnings.
Mathieu Othacehe [Sun, 29 Dec 2019 20:23:02 +0000 (21:23 +0100)]
gnu: guile-bytestructures: Remove guild warnings.

* gnu/packages/guile.scm (guile-bytestructures)[arguments]: Pass
GUILE_AUTO_COMPILE=0 as make-flag to prevent guild warnings.

4 years agognu: guile-bytestructures: Switch to git-fetch.
Mathieu Othacehe [Sun, 29 Dec 2019 20:21:49 +0000 (21:21 +0100)]
gnu: guile-bytestructures: Switch to git-fetch.

* gnu/packages/guile.scm (guile-bytestructures)[home-page]: Move up,
[source]: switch form url-fetch to git-fetch method,
[native-inputs]: add autoconf and automake.

4 years agognu: guile-bytestructures: Update to 1.0.7.
Mathieu Othacehe [Sun, 29 Dec 2019 20:20:02 +0000 (21:20 +0100)]
gnu: guile-bytestructures: Update to 1.0.7.

* gnu/packages/guile.scm (guile-bytestructures): Update to 1.0.7.

4 years agoprofiles: Fix profile-derivation cross-compilation.
Mathieu Othacehe [Tue, 24 Dec 2019 14:04:57 +0000 (15:04 +0100)]
profiles: Fix profile-derivation cross-compilation.

* guix/store.scm (current-target-system): New exported monadic procedure.
* guix/profiles.scm (profile-derivation): Set target at bind time using the
above procedure.

4 years agognu: guix-data-service: Update to 0.0.1-13.82b797e.
Christopher Baines [Sun, 29 Dec 2019 18:13:12 +0000 (18:13 +0000)]
gnu: guix-data-service: Update to 0.0.1-13.82b797e.

* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-13.82b797e.

4 years agognu: gnome-themes-extra: Remove cache file.
Raghav Gururajan [Sun, 29 Dec 2019 16:45:24 +0000 (11:45 -0500)]
gnu: gnome-themes-extra: Remove cache file.

* gnu/packages/gnome.scm (gnome-themes-extra)[arguments]: Disable cache file
from configure flags.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
4 years agoinstaller: Pass '--fallback' to 'guix system init'.
Ludovic Courtès [Sun, 29 Dec 2019 16:51:43 +0000 (17:51 +0100)]
installer: Pass '--fallback' to 'guix system init'.

Fixes <https://bugs.gnu.org/38608>.
Reported by Nathan Dehnel <ncdehnel@gmail.com>.

* gnu/installer/final.scm (install-system): Pass '--fallback' to 'guix
system init'.

4 years agoservices: dhcp-client: Ignore interfaces that cannot be activated.
Brice Waegeneire [Sat, 14 Dec 2019 07:23:26 +0000 (08:23 +0100)]
services: dhcp-client: Ignore interfaces that cannot be activated.

Fixes <https://bugs.gnu.org/38524>.

* gnu/services/networking.scm (dhcp-client-service-type): Filter interfaces
that cannot be activated.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
4 years agoinferior: Add 'inferior-package-provenance'.
Ludovic Courtès [Sun, 29 Dec 2019 16:35:56 +0000 (17:35 +0100)]
inferior: Add 'inferior-package-provenance'.

* guix/inferior.scm (inferior-package-provenance): New procedure.

4 years agopack: Save provenance information when using '--manifest'.
Ludovic Courtès [Sun, 29 Dec 2019 15:51:15 +0000 (16:51 +0100)]
pack: Save provenance information when using '--manifest'.

* guix/scripts/pack.scm (guix-pack)[manifest-from-args]: Remove
'provenance', and add 'with-provenance' procedure.  Wrap 'cond' form in
'with-provenance'.

4 years agoguix package: Save provenance information when using '--manifest'.
Ludovic Courtès [Sun, 29 Dec 2019 15:22:35 +0000 (16:22 +0100)]
guix package: Save provenance information when using '--manifest'.

Fixes <https://bugs.gnu.org/38673>.
Reported by zimoun <zimon.toutoune@gmail.com>.

* guix/describe.scm (manifest-entry-with-provenance): New procedure.
* guix/scripts/package.scm (process-actions): Use it when FILES is
non-empty.

4 years agoprofiles: Add 'map-manifest-entries'.
Ludovic Courtès [Sun, 29 Dec 2019 15:19:56 +0000 (16:19 +0100)]
profiles: Add 'map-manifest-entries'.

* guix/scripts/pack.scm (map-manifest-entries): Move to...
* guix/profiles.scm (map-manifest-entries): ... here.

4 years agogit-authenticate: Add glv to the list of committers.
Ludovic Courtès [Sun, 29 Dec 2019 17:24:12 +0000 (18:24 +0100)]
git-authenticate: Add glv to the list of committers.

This is a followup to 92fcf9856face3822ce827d7732c4b152f715f62, first
commit signed by glv.

* build-aux/git-authenticate.scm (%committers): Add glv.

4 years agognu: scummvm: Fix build.
Nicolas Goaziou [Sun, 29 Dec 2019 14:38:31 +0000 (15:38 +0100)]
gnu: scummvm: Fix build.

* gnu/packages/emulators.scm (scummvm)[arguments]: Add a phase to work around
a build failure introduced by recent Fluidsynth upgrade.

4 years agognu: txr: Update to 230.
Guillaume Le Vaillant [Sun, 29 Dec 2019 10:37:59 +0000 (11:37 +0100)]
gnu: txr: Update to 230.

* gnu/packages/lisp.scm (txr): Update to 230.

4 years agognu: gnome: Sort packages logically.
Raghav Gururajan [Thu, 26 Dec 2019 16:18:50 +0000 (11:18 -0500)]
gnu: gnome: Sort packages logically.

* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Sort packages into
their logical groupings.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: gnome: Update dependencies.
Raghav Gururajan [Thu, 26 Dec 2019 14:53:22 +0000 (09:53 -0500)]
gnu: gnome: Update dependencies.

* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Remove
font-cantarell, font-dejavu, at-spi2-core, dbus, dconf,
desktop-file-utils, gnome-defalt-applications, gnome-online-accounts,
gnome-themes-standard, gst-plugins-base, gst-plugins-good, gucharmap,
hicolor-icon-theme, pinentry-gnome3, pulseaudio, shared-mime-info,
system-config-printer, xdg-user-dirs, zenity
Add accountservice, adwaita-icon-theme, cheese, gdm, gnome-calendar,
gnome-characters, gnome-clocks, gnome-desktop, gnome-font-viewer,
gnome-maps, gnome-themes-extra, gsettings-desktop-schema, mutter,
network-manager, orca, packagekit, simplescan, upower.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: portaudio: Fix build.
Nicolas Goaziou [Sun, 29 Dec 2019 08:36:44 +0000 (09:36 +0100)]
gnu: portaudio: Fix build.

* gnu/packages/audio.scm (portaudio)[arguments]: Build sequentially.

Fixes <https://bugs.gnu.org/38782>.  This is a follow-up to commit
1ce6bfc21ce328d787df76c6ee132f9f828d098b.

4 years agognu: diffoscope: Update to 134.
Vagrant Cascadian [Sun, 29 Dec 2019 07:39:22 +0000 (07:39 +0000)]
gnu: diffoscope: Update to 134.

* gnu/packages/diffoscope (diffoscope): Update to 134.
  [arguments] Remove phase adding support for zstd.

4 years agognu: pelican: Update to 4.2.
Vagrant Cascadian [Thu, 26 Dec 2019 17:41:27 +0000 (17:41 +0000)]
gnu: pelican: Update to 4.2.

* gnu/packages/python-xyz (pelican): Update to 4.2.
  [propagated-inputs]: Alphabetize.
  [arguments]: Remove adjust-requires phase.

4 years agognu: Add ghc-filepath-bytestring.
Kyle Meyer [Sun, 29 Dec 2019 06:09:05 +0000 (01:09 -0500)]
gnu: Add ghc-filepath-bytestring.

* gnu/packages/haskell-xyz.scm (ghc-filepath-bytestring): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: curseradio: Link to mpv.
Efraim Flashner [Sun, 29 Dec 2019 07:49:32 +0000 (09:49 +0200)]
gnu: curseradio: Link to mpv.

This fixes https://debbugs.gnu.org/cgi/bugreport.cgi?bug=38789

* gnu/packages/music.scm (curseradio)[arguments]: Add phase to hardcode
path of mpv.
[propagated-inputs]: Move mpv ...
[inputs]: ... to here.

4 years agognu: emacs-auth-source-pass: Use upstream URL.
Joseph LaFreniere [Sat, 28 Dec 2019 23:22:47 +0000 (17:22 -0600)]
gnu: emacs-auth-source-pass: Use upstream URL.

* gnu/packages/emacs-xyz.scm (emacs-auth-source-pass): Use URL of
  upstream (rather than forked) repository.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
4 years agognu: ruby-oj: Don't use unstable tarball.
Efraim Flashner [Sat, 28 Dec 2019 21:02:45 +0000 (23:02 +0200)]
gnu: ruby-oj: Don't use unstable tarball.

* gnu/packages/ruby.scm (ruby-oj)[source]: Download using git-fetch.

4 years agognu: ruby-spring: Don't use unstable tarball.
Efraim Flashner [Sat, 28 Dec 2019 21:00:48 +0000 (23:00 +0200)]
gnu: ruby-spring: Don't use unstable tarball.

* gnu/packages/rails.scm (ruby-spring)[source]: Download using
git-fetch.

4 years agognu: ruby-guard: Don't use unstable tarball.
Efraim Flashner [Sat, 28 Dec 2019 20:53:14 +0000 (22:53 +0200)]
gnu: ruby-guard: Don't use unstable tarball.

* gnu/packages/ruby.scm (ruby-guard)[source]: Download using git-fetch.
[home-page]: Use https.

4 years agognu: ruby-ansi: Don't use unstable tarball.
Efraim Flashner [Sat, 28 Dec 2019 20:50:23 +0000 (22:50 +0200)]
gnu: ruby-ansi: Don't use unstable tarball.

* gnu/packages/ruby.scm (ruby-ansi)[source]: Download using git-fetch.

4 years agognu: ruby-ae: Don't use unstable tarball.
Efraim Flashner [Sat, 28 Dec 2019 20:48:02 +0000 (22:48 +0200)]
gnu: ruby-ae: Don't use unstable tarball.

* gnu/packages/ruby.scm (ruby-ae)[source]: Download using git-fetch.

4 years agognu: ruby-multi-json: Don't use unstable tarball.
Efraim Flashner [Sat, 28 Dec 2019 20:45:01 +0000 (22:45 +0200)]
gnu: ruby-multi-json: Don't use unstable tarball.

* gnu/packages/ruby.scm (ruby-multi-json)[source]: Download using
git-fetch.

4 years agognu: picom: Correct typo.
Brett Gilio [Sat, 28 Dec 2019 20:31:57 +0000 (14:31 -0600)]
gnu: picom: Correct typo.

* gnu/packages/compton.scm (picom): Correct spelling of "license".

4 years agognu: Add copyq.
Grillon [Thu, 26 Dec 2019 19:15:44 +0000 (20:15 +0100)]
gnu: Add copyq.

* gnu/packages/xdisorg.scm (copyq): New variable.

4 years agognu: Add picom.
Alexandru-Sergiu Marton [Sat, 28 Dec 2019 20:25:07 +0000 (14:25 -0600)]
gnu: Add picom.

* gnu/packages/compton.scm (picom): New variable.

Co-authored-by: Brett Gilio <brettg@gnu.org>
Signed-off-by: Brett Gilio <brettg@gnu.org>
4 years agognu: portaudio: Add C++ bindings.
Nicolas Goaziou [Fri, 27 Dec 2019 18:33:50 +0000 (19:33 +0100)]
gnu: portaudio: Add C++ bindings.

* gnu/packages/audio.scm (portaudio): Add C++ bindings, aka "portaudiocpp".

4 years agognu: emacs-shroud: Update to 1.105.
Amar Singh [Thu, 26 Dec 2019 03:31:42 +0000 (09:01 +0530)]
gnu: emacs-shroud: Update to 1.105.

* gnu/packages/emacs-xyz.scm (emacs-shroud): Update to 1.105.
[source]: Update to new source uri.
[build-system]: Switch to gnu-build-system.
[native-inputs]: Add autoconf, autotools, texinfo, perl, emacs-minimal.
[home-page]: Update to new uri.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: password-store: Make search path single-entry.
Alex Griffin [Sat, 28 Dec 2019 17:42:32 +0000 (10:42 -0700)]
gnu: password-store: Make search path single-entry.

* gnu/packages/password-utils.scm (password-store)[native-search-paths]: Add
separator #f to search path specification.

4 years agognu: Add ardupilot.
Mathieu Othacehe [Sat, 28 Dec 2019 15:28:48 +0000 (16:28 +0100)]
gnu: Add ardupilot.

* gnu/local.mk (GNU_SYSTEM_MODULES): Add drones.scm.
* gnu/packages/drones.scm: New file.

4 years agognu: python-waf: Add some extra tools.
Mathieu Othacehe [Sat, 28 Dec 2019 15:37:49 +0000 (16:37 +0100)]
gnu: python-waf: Add some extra tools.

* gnu/packages/python-xyz.scm (python-waf): Add gccdeps and
clang_compilation_database tools that are needed by ardupilot.

4 years agognu: python-waf: Update to 2.0.19.
Mathieu Othacehe [Sat, 28 Dec 2019 15:37:37 +0000 (16:37 +0100)]
gnu: python-waf: Update to 2.0.19.

* gnu/packages/python-xyz.scm (python-waf): Update to 2.0.19.

4 years agognu: Add gnome-themes-extra
Raghav Gururajan [Fri, 27 Dec 2019 17:16:07 +0000 (12:16 -0500)]
gnu: Add gnome-themes-extra

* gnu/packages/gnome.scm (gnome-themes-extra): New Variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
4 years agognu: beets: Add support for Acoustid.
Ricardo Wurmus [Sat, 28 Dec 2019 11:42:42 +0000 (12:42 +0100)]
gnu: beets: Add support for Acoustid.

* gnu/packages/music.scm (beets)[inputs]: Add python-pyacoustid.

4 years agognu: Add python-pyacoustid.
Ricardo Wurmus [Sat, 28 Dec 2019 11:42:29 +0000 (12:42 +0100)]
gnu: Add python-pyacoustid.

* gnu/packages/mp3.scm (python-pyacoustid): New variable.

4 years agognu: Add python-audioread.
Ricardo Wurmus [Sat, 28 Dec 2019 11:42:16 +0000 (12:42 +0100)]
gnu: Add python-audioread.

* gnu/packages/mp3.scm (python-audioread): New variable.

4 years agognu: emacs-ccls: Revise license.
Brett Gilio [Sat, 28 Dec 2019 02:36:55 +0000 (20:36 -0600)]
gnu: emacs-ccls: Revise license.

* gnu/packages/emacs-xyz.scm (emacs-ccls): Change license to reflect
  MIT/Expat-style license.

4 years agognu: emacs-ccls: Update to 0.1-4.
Brett Gilio [Sat, 28 Dec 2019 02:36:15 +0000 (20:36 -0600)]
gnu: emacs-ccls: Update to 0.1-4.

* gnu/packages/emacs-xyz.scm (emacs-ccls): Update to 0.1-4. Adds support for
  interacting with library folders.

4 years agognu: emacs-paren-face: Update to 1.0.5.
Brett Gilio [Sat, 28 Dec 2019 01:36:23 +0000 (19:36 -0600)]
gnu: emacs-paren-face: Update to 1.0.5.

* gnu/packages/emacs-xyz.scm (emacs-paren-face): Update to 1.0.5.

4 years agognu: emacs-keyfreq: Adjust indentation.
Brett Gilio [Sat, 28 Dec 2019 01:35:56 +0000 (19:35 -0600)]
gnu: emacs-keyfreq: Adjust indentation.

* gnu/packages/emacs-xyz.scm (emacs-keyfreq): Adjust indentation.

4 years agognu: emacs-d-mode: Update to 2.0.10.
Brett Gilio [Sat, 28 Dec 2019 01:35:44 +0000 (19:35 -0600)]
gnu: emacs-d-mode: Update to 2.0.10.

* gnu/packages/emacs-xyz.scm (emacs-d-mode): Update to 2.0.10.

4 years agognu: emacs-tablist: Adjust indentation.
Brett Gilio [Sat, 28 Dec 2019 01:35:22 +0000 (19:35 -0600)]
gnu: emacs-tablist: Adjust indentation.

* gnu/packages/emacs-xyz.scm (emacs-tablist): Adjust indentation.

4 years agognu: emacs-mmm-mode: Adjust indentation.
Brett Gilio [Sat, 28 Dec 2019 01:35:03 +0000 (19:35 -0600)]
gnu: emacs-mmm-mode: Adjust indentation.

* gnu/packages/emacs-xyz.scm (emacs-mmm-mode): Adjust indentation.

4 years agognu: emacs-graphviz-dot-mode: Update to 0.4.1.
Brett Gilio [Sat, 28 Dec 2019 01:34:42 +0000 (19:34 -0600)]
gnu: emacs-graphviz-dot-mode: Update to 0.4.1.

* gnu/packages/emacs-xyz.scm (emacs-graphviz-dot-mode): Update to 0.4.1.

4 years agognu: emacs-google-maps: Adjust indentation.
Brett Gilio [Sat, 28 Dec 2019 01:34:12 +0000 (19:34 -0600)]
gnu: emacs-google-maps: Adjust indentation.

* gnu/packages/emacs-xyz.scm (emacs-google-maps): Adjust indentation.

4 years agognu: emacs-direnv: Adjust indentation.
Brett Gilio [Sat, 28 Dec 2019 01:33:44 +0000 (19:33 -0600)]
gnu: emacs-direnv: Adjust indentation.

* gnu/packages/emacs-xyz.scm (emacs-direnv): Adjust indentation.

4 years agognu: emacs-calfw: Adjust indentation.
Brett Gilio [Sat, 28 Dec 2019 01:33:22 +0000 (19:33 -0600)]
gnu: emacs-calfw: Adjust indentation.

* gnu/packages/emacs-xyz.scm (emacs-calfw): Adjust indentation.

4 years agognu: emacs-autothemer: Adjust indentation.
Brett Gilio [Sat, 28 Dec 2019 01:33:00 +0000 (19:33 -0600)]
gnu: emacs-autothemer: Adjust indentation.

* gnu/packages/emacs-xyz.scm (emacs-autothemer): Adjust indentation.

4 years agognu: emacs-ag: Adjust indentation.
Brett Gilio [Sat, 28 Dec 2019 01:32:30 +0000 (19:32 -0600)]
gnu: emacs-ag: Adjust indentation.

* gnu/packages/emacs-xyz.scm (emacs-ag): Adjust indentation.

4 years agognu: emacs-emms-mode-line-cycle: Adjust indentation.
Brett Gilio [Sat, 28 Dec 2019 01:31:46 +0000 (19:31 -0600)]
gnu: emacs-emms-mode-line-cycle: Adjust indentation.

* gnu/packages/emacs-xyz.scm (emacs-emms-mode-line-cycle): Adjust indentation.

4 years agognu: emacs-wget: Adjust indentation.
Brett Gilio [Sat, 28 Dec 2019 01:31:17 +0000 (19:31 -0600)]
gnu: emacs-wget: Adjust indentation.

* gnu/packages/emacs-xyz.scm (emacs-wget): Adjust indentation.

4 years agognu: emacs-reformatter: Adjust indentation.
Brett Gilio [Sat, 28 Dec 2019 01:30:51 +0000 (19:30 -0600)]
gnu: emacs-reformatter: Adjust indentation.

* gnu/packages/emacs-xyz.scm (emacs-reformatter): Adjust indentation.

4 years agognu: emacs-dante: Modify version number.
Brett Gilio [Sat, 28 Dec 2019 01:30:16 +0000 (19:30 -0600)]
gnu: emacs-dante: Modify version number.

* gnu/packages/emacs-xyz.scm (emacs-dante): Use version number matching tag reference.

4 years agognu: emacs-haskell-mode: Adjust indentation.
Brett Gilio [Sat, 28 Dec 2019 01:29:52 +0000 (19:29 -0600)]
gnu: emacs-haskell-mode: Adjust indentation.

* gnu/packages/emacs-xyz.scm (emacs-haskell-mode): Adjust indentation.

4 years agognu: emacs-graphql: Adjust indentation.
Brett Gilio [Sat, 28 Dec 2019 01:29:03 +0000 (19:29 -0600)]
gnu: emacs-graphql: Adjust indentation.

* gnu/packages/emacs-xyz.scm (emacs-graphql): Adjust indentation.

4 years agognu: emacs-minions: Update to 0.3.2.
Brett Gilio [Sat, 28 Dec 2019 01:28:44 +0000 (19:28 -0600)]
gnu: emacs-minions: Update to 0.3.2.

* gnu/packages/emacs-xyz.scm (emacs-minions): Update to 0.3.2.

4 years agognu: emacs-with-editor: Update to 2.9.0.
Brett Gilio [Sat, 28 Dec 2019 01:28:21 +0000 (19:28 -0600)]
gnu: emacs-with-editor: Update to 2.9.0.

* gnu/packages/emacs-xyz.scm (emacs-with-editor): Update to 2.9.0.

4 years agognu: emacs-doom-themes: Update to 2.1.6-3.
Brett Gilio [Fri, 27 Dec 2019 23:05:00 +0000 (17:05 -0600)]
gnu: emacs-doom-themes: Update to 2.1.6-3.

* gnu/packages/emacs-xyz.scm (emacs-doom-themes): Update to 2.1.6-3.
[arguments]<emacs-batch-disable-compilation>: Add new "material" theme to list
of exceptions.

4 years agognu: emacs-doom-themes: Only disable breaking compilations.
Leo Prikler [Sat, 14 Dec 2019 23:49:26 +0000 (00:49 +0100)]
gnu: emacs-doom-themes: Only disable breaking compilations.

* gnu/packages/emacs-xyz.scm (emacs-doom-themes)[phases]:
<build>: Readd this phase.
<disable-breaking-compilation>: Add this phase to work around single file
errors in bytecompilation.

Signed-off-by: Brett Gilio <brettg@gnu.org>
4 years agoguix: emacs-utils: Add emacs-batch-disable-compilation.
Leo Prikler [Sat, 14 Dec 2019 23:45:08 +0000 (00:45 +0100)]
guix: emacs-utils: Add emacs-batch-disable-compilation.

* guix/build/emacs-utils.scm (emacs-batch-disable-compilation):
New procedure.

Signed-off-by: Brett Gilio <brettg@gnu.org>
4 years agognu: r-inspect: Update to 1.16.1.
Ricardo Wurmus [Fri, 27 Dec 2019 19:33:08 +0000 (20:33 +0100)]
gnu: r-inspect: Update to 1.16.1.

* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.1.
[propagated-inputs]: Add r-gdata.

4 years agognu: r-multiassayexperiment: Update to 1.12.1.
Ricardo Wurmus [Fri, 27 Dec 2019 19:32:59 +0000 (20:32 +0100)]
gnu: r-multiassayexperiment: Update to 1.12.1.

* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.1.

4 years agognu: r-rgadem: Update to 2.34.1.
Ricardo Wurmus [Fri, 27 Dec 2019 19:32:39 +0000 (20:32 +0100)]
gnu: r-rgadem: Update to 2.34.1.

* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.1.
[propagated-inputs]: Add r-genomicranges.

4 years agognu: r-clusterprofiler: Update to 3.14.2.
Ricardo Wurmus [Fri, 27 Dec 2019 19:32:31 +0000 (20:32 +0100)]
gnu: r-clusterprofiler: Update to 3.14.2.

* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.2.

4 years agognu: r-enrichplot: Update to 1.6.1.
Ricardo Wurmus [Fri, 27 Dec 2019 19:32:24 +0000 (20:32 +0100)]
gnu: r-enrichplot: Update to 1.6.1.

* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.1.

4 years agognu: r-biocsingular: Update to 1.2.1.
Ricardo Wurmus [Fri, 27 Dec 2019 19:32:16 +0000 (20:32 +0100)]
gnu: r-biocsingular: Update to 1.2.1.

* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.1.

4 years agognu: r-affycoretools: Update to 1.58.3.
Ricardo Wurmus [Fri, 27 Dec 2019 19:32:08 +0000 (20:32 +0100)]
gnu: r-affycoretools: Update to 1.58.3.

* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.3.

4 years agognu: r-car: Update to 3.0-6.
Ricardo Wurmus [Fri, 27 Dec 2019 19:32:02 +0000 (20:32 +0100)]
gnu: r-car: Update to 3.0-6.

* gnu/packages/statistics.scm (r-car): Update to 3.0-6.

4 years agognu: r-robust: Update to 0.4-18.2.
Ricardo Wurmus [Fri, 27 Dec 2019 19:31:57 +0000 (20:31 +0100)]
gnu: r-robust: Update to 0.4-18.2.

* gnu/packages/statistics.scm (r-robust): Update to 0.4-18.2.

4 years agognu: r-bigmemory: Update to 4.5.36.
Ricardo Wurmus [Fri, 27 Dec 2019 19:31:51 +0000 (20:31 +0100)]
gnu: r-bigmemory: Update to 4.5.36.

* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.36.

4 years agognu: r-foreign: Update to 0.8-74.
Ricardo Wurmus [Fri, 27 Dec 2019 19:31:46 +0000 (20:31 +0100)]
gnu: r-foreign: Update to 0.8-74.

* gnu/packages/statistics.scm (r-foreign): Update to 0.8-74.

4 years agognu: r-slam: Update to 0.1-47.
Ricardo Wurmus [Fri, 27 Dec 2019 19:31:37 +0000 (20:31 +0100)]
gnu: r-slam: Update to 0.1-47.

* gnu/packages/cran.scm (r-slam): Update to 0.1-47.

4 years agognu: r-bibtex: Update to 0.4.2.1.
Ricardo Wurmus [Fri, 27 Dec 2019 19:31:32 +0000 (20:31 +0100)]
gnu: r-bibtex: Update to 0.4.2.1.

* gnu/packages/cran.scm (r-bibtex): Update to 0.4.2.1.

4 years agognu: r-topgo: Update to 2.38.1.
Ricardo Wurmus [Fri, 27 Dec 2019 19:31:26 +0000 (20:31 +0100)]
gnu: r-topgo: Update to 2.38.1.

* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.38.1.

4 years agognu: r-summarizedexperiment: Update to 1.16.1.
Ricardo Wurmus [Fri, 27 Dec 2019 19:31:20 +0000 (20:31 +0100)]
gnu: r-summarizedexperiment: Update to 1.16.1.

* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.16.1.

4 years agognu: r-delayedarray: Update to 0.12.1.
Ricardo Wurmus [Fri, 27 Dec 2019 19:31:14 +0000 (20:31 +0100)]
gnu: r-delayedarray: Update to 0.12.1.

* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.1.

4 years agognu: r-biocparallel: Update to 1.20.1.
Ricardo Wurmus [Fri, 27 Dec 2019 19:31:09 +0000 (20:31 +0100)]
gnu: r-biocparallel: Update to 1.20.1.

* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.20.1.

4 years agognu: r-shortread: Update to 1.44.1.
Ricardo Wurmus [Fri, 27 Dec 2019 19:31:00 +0000 (20:31 +0100)]
gnu: r-shortread: Update to 1.44.1.

* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.44.1.

4 years agognu: guix-data-service: Update to 0.0.1-12.f56935a.
Christopher Baines [Fri, 27 Dec 2019 14:47:29 +0000 (14:47 +0000)]
gnu: guix-data-service: Update to 0.0.1-12.f56935a.

* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-12.f56935a.

4 years agodoc: Mention "make authenticate".
Ludovic Courtès [Fri, 27 Dec 2019 12:52:05 +0000 (13:52 +0100)]
doc: Mention "make authenticate".

* doc/contributing.texi (Building from Git): Add instructions to run
'git verify-commit' and 'make authenticate'.

4 years agogit-authenticate: Keep a local cache of previously-authenticated commits.
Ludovic Courtès [Fri, 27 Dec 2019 12:20:15 +0000 (13:20 +0100)]
git-authenticate: Keep a local cache of previously-authenticated commits.

A list of already-authenticated commits is kept in
~/.cache/guix/authentication.  This speeds up subsequent "make
authenticate" invocations.

* build-aux/git-authenticate.scm (authenticated-commit-cache-file)
(previously-authenticated-commits, cache-authenticated-commit): New
procedures.
(git-authenticate): Define 'authenticated-commits' and pass it as a
third argument to 'commit-difference'.  Add call to
'cache-authenticated-commit'.  Don't display signing stats when STATS is
null.

4 years agogit: 'commit-difference' takes a list of excluded commits.
Ludovic Courtès [Fri, 27 Dec 2019 12:15:00 +0000 (13:15 +0100)]
git: 'commit-difference' takes a list of excluded commits.

* guix/git.scm (commit-closure): Add 'visited' optional parameter.
(commit-difference): Add 'excluded' optional parameter; pass second
argument to 'commit-closure'.
* tests/git.scm ("commit-difference, excluded commits"): New test.

4 years agoAdd 'build-aux/git-authenticate.scm'.
Ludovic Courtès [Thu, 26 Dec 2019 18:54:39 +0000 (19:54 +0100)]
Add 'build-aux/git-authenticate.scm'.

* build-aux/git-authenticate.scm: New file.
* Makefile.am (EXTRA_DIST): Add it.
(commit_v1_0_1): New variable.
(authenticate): New target.

4 years agognu: emacs-org-contrib: Update to 20191226.
Nicolas Goaziou [Fri, 27 Dec 2019 08:44:26 +0000 (09:44 +0100)]
gnu: emacs-org-contrib: Update to 20191226.

* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 20191226.

4 years agognu: emacs-org: Update to 9.3.1.
Nicolas Goaziou [Fri, 27 Dec 2019 08:42:02 +0000 (09:42 +0100)]
gnu: emacs-org: Update to 9.3.1.

* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.3.1.

4 years agognu: emacs-telega: Update to 0.5.4.
Brett Gilio [Thu, 26 Dec 2019 19:10:37 +0000 (13:10 -0600)]
gnu: emacs-telega: Update to 0.5.4.

* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.4.
[arguments]: Working around imagemagick and svg is no longer needed.
[native-inputs]: Replace emacs-minimal with emacs. This is needed because
bytecompilation requires fringe-bitmap support.

4 years agognu: Add ffmpegthumbs.
Hartmut Goebel [Sun, 8 Dec 2019 18:09:10 +0000 (19:09 +0100)]
gnu: Add ffmpegthumbs.

* gnu/packages/kde-multimedia.scm (ffmpegthumbs): New variable.

4 years agognu: Add audiocd-kio.
Hartmut Goebel [Sun, 8 Dec 2019 16:52:47 +0000 (17:52 +0100)]
gnu: Add audiocd-kio.

* gnu/packages/kde-multimedia.scm (audiocd-kio): New variable.

4 years agognu: Add libkcompactdisc.
Hartmut Goebel [Sun, 8 Dec 2019 17:09:36 +0000 (18:09 +0100)]
gnu: Add libkcompactdisc.

* gnu/packages/kde-multimedia.scm (libkcompactdisc): New variable.