jackhill/guix/guix.git
6 years agognu: openvpn: Mark up description.
Tobias Geerinckx-Rice [Sun, 4 Mar 2018 16:33:56 +0000 (17:33 +0100)]
gnu: openvpn: Mark up description.

* gnu/packages/vpn.scm (openvpn)[description]: Use @dfn.

6 years agognu: openvpn: Update to 2.4.5.
Tobias Geerinckx-Rice [Sun, 4 Mar 2018 16:32:56 +0000 (17:32 +0100)]
gnu: openvpn: Update to 2.4.5.

* gnu/packages/vpn.scm (openvpn): Update to 2.4.5.

6 years agognu: papi: Use HTTPS home page.
Tobias Geerinckx-Rice [Sun, 4 Mar 2018 16:16:46 +0000 (17:16 +0100)]
gnu: papi: Use HTTPS home page.

* gnu/packages/profiling.scm (papi)[home-page]: Use HTTPS.

6 years agognu: papi: Fix documentation location.
Tobias Geerinckx-Rice [Sun, 4 Mar 2018 16:28:37 +0000 (17:28 +0100)]
gnu: papi: Fix documentation location.

* gnu/packages/profiling.scm (papi)[arguments]: Install ‘documentation’
to a customary subdirectory of /share/doc.

6 years agognu: xpra: Update to 2.2.5.
Rutger Helling [Mon, 5 Mar 2018 11:28:34 +0000 (12:28 +0100)]
gnu: xpra: Update to 2.2.5.

* gnu/packages/xorg.scm (xpra): Update to 2.2.5.

6 years agoui: Better workaround for lack of '%fresh-auto-compile' on 2.2.3.
Ludovic Courtès [Mon, 5 Mar 2018 09:52:32 +0000 (10:52 +0100)]
ui: Better workaround for lack of '%fresh-auto-compile' on 2.2.3.

Fixes <https://bugs.gnu.org/29226> for the most part.

* guix/ui.scm (load*): Add call to 'compile-file' on 2.2.3.

6 years agonls: Add Simplified Chinese translation.
Ludovic Courtès [Mon, 5 Mar 2018 09:40:19 +0000 (10:40 +0100)]
nls: Add Simplified Chinese translation.

6 years agobuild: Default to berlin.guixsd.org substitutes on aarch64.
Ludovic Courtès [Mon, 5 Mar 2018 09:37:17 +0000 (10:37 +0100)]
build: Default to berlin.guixsd.org substitutes on aarch64.

Suggested by Efraim Flashner <efraim@flashner.co.il>.

* config-daemon.ac: Set 'guix_substitute_urls' to berlin.guixsd.org on
aarch64.

6 years agobuild: Always use https substitute URLs.
Ludovic Courtès [Mon, 5 Mar 2018 09:32:55 +0000 (10:32 +0100)]
build: Always use https substitute URLs.

* config-daemon.ac: Remove GUILE_MODULE_AVAILABLE check for (gnutls).

6 years agodoc: Adjust 'xset -fp' command to avoid symlinks.
Ludovic Courtès [Sun, 4 Mar 2018 21:39:43 +0000 (22:39 +0100)]
doc: Adjust 'xset -fp' command to avoid symlinks.

Fixes <https://bugs.gnu.org/30655>.
Reported by Marco van Hulten <marco@hulten.org>.

* doc/guix.texi (Application Setup): Adjust 'xset +fp' example.

6 years agognu: linux-libre@4.14: Update to 4.14.24.
Mark H Weaver [Mon, 5 Mar 2018 08:43:45 +0000 (03:43 -0500)]
gnu: linux-libre@4.14: Update to 4.14.24.

* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.24.
(%linux-libre-4.14-hash): Update hash.

6 years agognu: linux-libre@4.9: Update to 4.9.86.
Mark H Weaver [Mon, 5 Mar 2018 08:43:02 +0000 (03:43 -0500)]
gnu: linux-libre@4.9: Update to 4.9.86.

* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.86.

6 years agognu: linux-libre@4.4: Update to 4.4.120.
Mark H Weaver [Mon, 5 Mar 2018 08:42:07 +0000 (03:42 -0500)]
gnu: linux-libre@4.4: Update to 4.4.120.

* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.120.

6 years agognu: Add emacs-terraform-mode.
Christopher Baines [Thu, 18 Jan 2018 22:38:12 +0000 (22:38 +0000)]
gnu: Add emacs-terraform-mode.

* gnu/packages/emacs.scm (emacs-terraform-mode): New variable.

6 years agognu: Add emacs-hcl-mode.
Christopher Baines [Thu, 18 Jan 2018 22:37:59 +0000 (22:37 +0000)]
gnu: Add emacs-hcl-mode.

* gnu/packages/emacs.scm (emacs-hcl-mode): New variable.

6 years agoservices: Add openntpd service.
Efraim Flashner [Tue, 28 Nov 2017 08:19:11 +0000 (10:19 +0200)]
services: Add openntpd service.

* gnu/packages/ntp.scm (openntpd)[arguments]: Add 'configure-flags to
set openntpd daemon's user and localstatedir. Add a custom phase to not
try to create said directory at install time.
* gnu/services/networking.scm (<openntpd-configuration>): New record type.
(openntpd-shepherd-service, openntpd-service-activation): New procedures.
(openntpd-service-type): New variable.
* doc/guix.texi (Networking Services): Add openntpd documentation.

6 years agognu: papi: Update phase style.
Tobias Geerinckx-Rice [Sun, 4 Mar 2018 16:20:03 +0000 (17:20 +0100)]
gnu: papi: Update phase style.

* gnu/packages/profiling.scm (papi)[arguments]: Substitute INVOKE for
SYSTEM*, end phases with #t, and don't explicitly install LICENSE.txt.

6 years agognu: tomb: Update phase style.
Tobias Geerinckx-Rice [Sat, 3 Mar 2018 23:37:59 +0000 (00:37 +0100)]
gnu: tomb: Update phase style.

* gnu/packages/crypto.scm (tomb)[arguments]: Substitute INVOKE for
SYSTEM* and end phases with #t.

6 years agognu: tomb: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 3 Mar 2018 23:33:28 +0000 (00:33 +0100)]
gnu: tomb: Use HTTPS home page.

* gnu/packages/crypto.scm (tomb)[home-page]: Use HTTPS.

6 years agognu: footswitch: Update to 0.1-2.deedd87.
Tobias Geerinckx-Rice [Sun, 4 Mar 2018 16:09:27 +0000 (17:09 +0100)]
gnu: footswitch: Update to 0.1-2.deedd87.

* gnu/packages/accessibility.scm (footswitch): Update to 0.1-2.deedd87.

6 years agognu: footswitch: Remove redundant MKDIR-P.
Tobias Geerinckx-Rice [Sun, 4 Mar 2018 16:06:10 +0000 (17:06 +0100)]
gnu: footswitch: Remove redundant MKDIR-P.

* gnu/packages/accessibility.scm (footswitch)[arguments]: Remove MKDIR-P
before INSTALL-FILE.

6 years agognu: gitolite: Update phase style.
Tobias Geerinckx-Rice [Sun, 4 Mar 2018 15:57:01 +0000 (16:57 +0100)]
gnu: gitolite: Update phase style.

* gnu/packages/version-control.scm (gitolite): Substitute INVOKE for
SYSTEM* and end phases with #t.

6 years agognu: gitolite: Update to 3.6.7.
Tobias Geerinckx-Rice [Sun, 4 Mar 2018 15:56:27 +0000 (16:56 +0100)]
gnu: gitolite: Update to 3.6.7.

* gnu/packages/version-control.scm (gitolite): Update to 3.6.7.

6 years agognu: ii, sic: Use HTTPS home pages.
Tobias Geerinckx-Rice [Sun, 4 Mar 2018 00:27:15 +0000 (01:27 +0100)]
gnu: ii, sic: Use HTTPS home pages.

* gnu/packages/irc.scm (ii, sic)[home-page]: Use HTTPS.

6 years agognu: ii: Update to 1.8.
Tobias Geerinckx-Rice [Sun, 4 Mar 2018 00:26:07 +0000 (01:26 +0100)]
gnu: ii: Update to 1.8.

* gnu/packages/irc.scm (ii): Update to 1.8.

6 years agognu: cloc: Update phase style.
Tobias Geerinckx-Rice [Sun, 4 Mar 2018 00:11:47 +0000 (01:11 +0100)]
gnu: cloc: Update phase style.

* gnu/packages/code.scm (cloc)[arguments]: Substitute INVOKE for SYSTEM*
and end phases with #t.

6 years agognu: cloc: Update to 1.76.
Tobias Geerinckx-Rice [Sun, 4 Mar 2018 00:09:57 +0000 (01:09 +0100)]
gnu: cloc: Update to 1.76.

* gnu/packages/code.scm (cloc): Update to 1.76.
[source]: Update origin URI scheme.
[inputs]: Add perl-parallel-forkmanager.

6 years agognu: liblo: Mark up description.
Tobias Geerinckx-Rice [Sat, 3 Mar 2018 22:17:04 +0000 (23:17 +0100)]
gnu: liblo: Mark up description.

* gnu/packages/audio.scm (liblo)[description]: Use @dfn.

6 years agognu: multipath-tools: Update to 0.7.4.
Marius Bakke [Sun, 4 Mar 2018 04:54:48 +0000 (05:54 +0100)]
gnu: multipath-tools: Update to 0.7.4.

* gnu/packages/linux.scm (multipath-tools): Update to 0.7.4.
[source]: Download using HTTPS.

6 years agognu: freexl: Update to 1.0.5 [security fixes].
Marius Bakke [Sun, 4 Mar 2018 03:40:38 +0000 (04:40 +0100)]
gnu: freexl: Update to 1.0.5 [security fixes].

Fixes CVE-2018-7435, CVE-2018-7436, CVE-2018-7437, CVE-2018-7438 and
CVE-2018-7439.

* gnu/packages/xml.scm (freexl): Update to 1.0.5.

6 years agognu: ceph: Update to 12.2.4.
Marius Bakke [Wed, 21 Feb 2018 14:24:00 +0000 (15:24 +0100)]
gnu: ceph: Update to 12.2.4.

* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust to
upstream changes.
* gnu/packages/patches/ceph-disable-unittest-throttle.patch: Delete file.
* gnu/packages/patches/ceph-rocksdb-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/storage.scm (ceph): Update to 12.2.4.
[source](patches): Adjust.
[arguments]: Add "-DWITH_BABELTRACE=OFF" in #:configure-flags.  Build with
CMAKE-3.11.  Adjust file substitutions.  Wrap 'ceph' executable.
[native-inputs]: Add GPERF.
[inputs]: Replace BOOST with BOOST-1.66.  Add PYTHON2-PRETTYTABLE.

6 years agognu: Add cmake@3.11.
Marius Bakke [Sat, 24 Feb 2018 18:44:47 +0000 (19:44 +0100)]
gnu: Add cmake@3.11.

* gnu/packages/cmake.scm (cmake-3.11): New public variable.

6 years agognu: Add boost@1.66.0.
Marius Bakke [Sat, 24 Feb 2018 18:42:36 +0000 (19:42 +0100)]
gnu: Add boost@1.66.0.

* gnu/packages/boost.scm (boost-1.66): New public variable.

6 years agognu: java-snappy: Update to 1.1.7.
Marius Bakke [Wed, 21 Feb 2018 03:26:29 +0000 (04:26 +0100)]
gnu: java-snappy: Update to 1.1.7.

* gnu/packages/compression.scm (java-snappy): Update to 1.1.7.
[arguments]: Use INVOKE instead of SYSTEM*.  Avoid CMAKE dependency.  Delete
Hadoop test.  Enable fixed test.
[native-inputs]: Add JAVA-COMMONS-LANG and JAVA-COMMONS-IO.

6 years agognu: snappy: Update to 1.1.7.
Marius Bakke [Wed, 21 Feb 2018 02:14:52 +0000 (03:14 +0100)]
gnu: snappy: Update to 1.1.7.

* gnu/packages/compression.scm (snappy): Update to 1.1.7.
[source]: Change to git archive.  Set file-name.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flags.
[description]: Fix infractions.

6 years agognu: rocksdb: Update to 5.10.4.
Marius Bakke [Wed, 21 Feb 2018 02:06:39 +0000 (03:06 +0100)]
gnu: rocksdb: Update to 5.10.4.

* gnu/packages/databases.scm (rocksdb): Update to 5.10.4.
[source]: Substitute the unbundled copy of GNU Parallel.
[arguments]: Add "V=1" "USE_RTTI=1" and
"ROCKSDBTESTS_END=db_tailing_iter_test" to #:make-flags.  Set #:test-target to
"check_some".  Respect parallel jobs in 'build-release-libraries' phase and
rename to 'build'.
[license]: Update for changes in 5.5.4.

6 years agognu: inkscape: Disable duplicate icon cache generation.
Danny Milosavljevic [Sun, 4 Mar 2018 14:44:34 +0000 (15:44 +0100)]
gnu: inkscape: Disable duplicate icon cache generation.

* gnu/packages/inkscape.scm (inkscape): Disable duplicate icon cache
generation.

6 years agognu: abiword: Disable duplicate icon cache generation.
Danny Milosavljevic [Sun, 4 Mar 2018 14:43:46 +0000 (15:43 +0100)]
gnu: abiword: Disable duplicate icon cache generation.

* gnu/packages/abiword.scm (abiword): Disable duplicate icon cache generation.

6 years agognu: python-funcy: Fix tests.
Danny Milosavljevic [Sun, 4 Mar 2018 14:42:41 +0000 (15:42 +0100)]
gnu: python-funcy: Fix tests.

* gnu/packages/python.scm (python-funcy)[native-inputs]: Delete python-pytest-warnings.

6 years agogit-download: Fetch only the required commit, if possible.
Danny Milosavljevic [Tue, 13 Feb 2018 23:54:01 +0000 (00:54 +0100)]
git-download: Fetch only the required commit, if possible.

* guix/build/git.scm (git-fetch): Fetch only the required commit, if possible.

6 years agognu: antlr3-3.3: Fix java8 issue.
Gábor Boskovits [Sun, 4 Mar 2018 13:16:37 +0000 (14:16 +0100)]
gnu: antlr3-3.3: Fix java8 issue.

* gnu/packages/java.scm (antlr3-3.3)[source]: Add patch.
* gnu/packages/patches/antlr3-3_3-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
6 years agognu: antlr3-3.1: Fix java8 issue.
Gábor Boskovits [Sun, 4 Mar 2018 13:13:47 +0000 (14:13 +0100)]
gnu: antlr3-3.1: Fix java8 issue.

* gnu/packages/java.scm (antlr3-3.1)[source]: Add patch.
* gnu/packages/patches/antlr3-3_1-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
6 years agognu: go-github-com-aki237-nscjar: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 10:37:33 +0000 (12:37 +0200)]
gnu: go-github-com-aki237-nscjar: Declare a source file-name.

* gnu/packages/golang.scm (go-github-com-aki237-nscjar)[source]: Declare
a source file-name.

6 years agognu: go-github-com-davidjpeacock-cli: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 10:36:34 +0000 (12:36 +0200)]
gnu: go-github-com-davidjpeacock-cli: Declare a source file-name.

* gnu/packages/golang.scm (go-github-com-davidjpeacock-cli)[source]:
Declare a source file-name.

6 years agognu: go-github-com-alsm-ioprogress: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 10:35:31 +0000 (12:35 +0200)]
gnu: go-github-com-alsm-ioprogress: Declare a source file-name.

* gnu/packages/golang.scm (go-github-com-alsm-ioprogress)[source]:
Declare a source file-name.

6 years agognu: freegish: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 10:33:55 +0000 (12:33 +0200)]
gnu: freegish: Declare a source file-name.

* gnu/packages/games.scm (freegish)[source]: Declare a source file-name.

6 years agognu: disorderfs: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 10:32:39 +0000 (12:32 +0200)]
gnu: disorderfs: Declare a source file-name.

* gnu/packages/file-systems.scm (disorderfs)[source]: Declare a source
file-name.

6 years agognu: emacs-sly: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 10:30:53 +0000 (12:30 +0200)]
gnu: emacs-sly: Declare a source file-name.

* gnu/packages/emacs.scm (emacs-sly)[source]: Declare a source
file-name.

6 years agognu: emacs-epl: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 10:30:08 +0000 (12:30 +0200)]
gnu: emacs-epl: Declare a source file-name.

* gnu/packages/emacs.scm (emacs-epl)[source]: Declare a source
file-name.

6 years agognu: python-apsw: Use invoke.
Efraim Flashner [Sun, 4 Mar 2018 10:03:27 +0000 (12:03 +0200)]
gnu: python-apsw: Use invoke.

* gnu/packages/databases.scm (python-apsw)[arguments]: Use invoke.

6 years agognu: python-apsw: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 09:55:37 +0000 (11:55 +0200)]
gnu: python-apsw: Declare a source file-name.

* gnu/packages/databases.scm (python-apsw)[source]: Declare a source
file-name.

6 years agognu: kurly: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 09:55:08 +0000 (11:55 +0200)]
gnu: kurly: Declare a source file-name.

* gnu/packages/curl.scm (kurly)[source]: Declare a source file-name.

6 years agognu: unshield: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 09:51:08 +0000 (11:51 +0200)]
gnu: unshield: Declare a source file-name.

* gnu/packages/compression.scm (unshield)[source]: Declare a source
file-name.

6 years agognu: sfarkxtc: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 09:50:16 +0000 (11:50 +0200)]
gnu: sfarkxtc: Declare a source file-name.

* gnu/packages/compression.scm (sfarkxtc)[source]: Declare a source
file-name.

6 years agognu: piranha: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 09:48:40 +0000 (11:48 +0200)]
gnu: piranha: Declare a source file-name.

* gnu/packages/bioinformatics.scm (piranha)[source]: Declare a source
file-name.

6 years agognu: libdivsufsort: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 09:47:42 +0000 (11:47 +0200)]
gnu: libdivsufsort: Declare a source file-name.

* gnu/packages/bioinformatics.scm (libdivsufsort)[source]: Declare a
source file-name.

6 years agognu: seek: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 09:46:43 +0000 (11:46 +0200)]
gnu: seek: Declare a source file-name.

* gnu/packages/bioinformatics.scm (seek)[source]: Declare a source
file-name.

6 years agognu: r-dropbead: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 09:45:40 +0000 (11:45 +0200)]
gnu: r-dropbead: Declare a source file-name.

* gnu/packages/bioinformatics.scm (r-dropbead)[source]: Declare a source
file-name.

6 years agognu: faust@2: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 07:58:23 +0000 (09:58 +0200)]
gnu: faust@2: Declare a source file-name.

* gnu/packages/audio.scm (faust@2)[source]: Declare a source file-name.

6 years agognu: rubberband: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 07:57:24 +0000 (09:57 +0200)]
gnu: rubberband: Declare a source file-name.

* gnu/packages/audio.scm (rubberband)[source]: Declare a source
file-name.

6 years agognu: qjackrcd: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 07:55:46 +0000 (09:55 +0200)]
gnu: qjackrcd: Declare a source file-name.

* gnu/packages/audio.scm (qjackrcd)[source]: Declare a source file-name.

6 years agognu: lv2-devel: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 07:54:51 +0000 (09:54 +0200)]
gnu: lv2-devel: Declare a source file-name.

* gnu/packages/audio.scm (lv2-devel)[source]: Declare a source file-name.

6 years agognu: lv2-mda-piano: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 07:53:55 +0000 (09:53 +0200)]
gnu: lv2-mda-piano: Declare a source file-name.

* gnu/packages/audio.scm (lv2-mda-piano)[source]: Declare a source
file-name.

6 years agognu: papagayo: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 07:52:08 +0000 (09:52 +0200)]
gnu: papagayo: Declare a source file-name.

* gnu/packages/animation.scm (papagayo)[source]: Declare a source
file-name.

6 years agognu: masscan: Declare a source file-name.
Efraim Flashner [Sun, 4 Mar 2018 07:48:46 +0000 (09:48 +0200)]
gnu: masscan: Declare a source file-name.

* gnu/packages/admin.scm (masscan)[source]: Declare a source file-name.

6 years agoservices: redis: Add a default-value to the redis-service-type.
Christopher Baines [Thu, 18 Jan 2018 22:45:40 +0000 (22:45 +0000)]
services: redis: Add a default-value to the redis-service-type.

* gnu/packages/databases.scm (redis-service-type)[default-value]: Set
  to (redis-configuration).

6 years agoservices: mysql: Add a default-value to the mysql-service-type.
Christopher Baines [Thu, 18 Jan 2018 22:45:35 +0000 (22:45 +0000)]
services: mysql: Add a default-value to the mysql-service-type.

* gnu/services/databases.scm (mysql-service-type)[default-value]: Set
  to (mysql-configuration).

6 years agoservices: postgresql: Add a default-value to the postgresql-service-type.
Christopher Baines [Thu, 18 Jan 2018 22:45:26 +0000 (22:45 +0000)]
services: postgresql: Add a default-value to the postgresql-service-type.

* gnu/packages/databases.scm (<postgresql-configuration>)
  [config-file,data-directory]: Add default.
  (postgresql-service-type)[default-value]:
  Set to (postgresql-configuration).

6 years agolinux-modules: Add module-aliases.
Danny Milosavljevic [Sat, 3 Mar 2018 13:55:27 +0000 (14:55 +0100)]
linux-modules: Add module-aliases.

* gnu/build/linux-modules.scm (module-aliases): New variable.

6 years agognu: tor: Update to 0.3.2.10 [security fixes].
Tobias Geerinckx-Rice [Sat, 3 Mar 2018 20:01:20 +0000 (21:01 +0100)]
gnu: tor: Update to 0.3.2.10 [security fixes].

This release fixes TROVE-2018-001 (also tracked as CVE-2018-0490),
TROVE-2018-002 (CVE-2018-049), and TROVEs-2018-00{3,4} as well.

* gnu/packages/tor.scm (tor): Update to 0.3.2.10.

6 years agognu: Add dropseq-tools.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:49 +0000 (19:41 +0100)]
gnu: Add dropseq-tools.

* gnu/packages/bioinformatics.scm (dropseq-tools): New variable.

6 years agognu: Add java-picard-2.10.3.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:48 +0000 (19:41 +0100)]
gnu: Add java-picard-2.10.3.

* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable.

6 years agognu: Add java-htsjdk-2.10.1.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:47 +0000 (19:41 +0100)]
gnu: Add java-htsjdk-2.10.1.

* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable.

6 years agognu: Add java-htsjdk-latest.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:46 +0000 (19:41 +0100)]
gnu: Add java-htsjdk-latest.

* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable.

6 years agognu: Add java-biojava-alignment-4.0.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:45 +0000 (19:41 +0100)]
gnu: Add java-biojava-alignment-4.0.

* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable.

6 years agognu: Add java-biojava-phylo-4.0.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:44 +0000 (19:41 +0100)]
gnu: Add java-biojava-phylo-4.0.

* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable.

6 years agognu: Add java-biojava-core-4.0.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:43 +0000 (19:41 +0100)]
gnu: Add java-biojava-core-4.0.

* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable.

6 years agognu: Add java-biojava-alignment.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:42 +0000 (19:41 +0100)]
gnu: Add java-biojava-alignment.

* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable.

6 years agognu: Add java-biojava-phylo.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:41 +0000 (19:41 +0100)]
gnu: Add java-biojava-phylo.

* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable.

6 years agognu: Add java-forester-1.005.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:40 +0000 (19:41 +0100)]
gnu: Add java-forester-1.005.

* gnu/packages/bioinformatics.scm (java-forester-1.005): New variable.

6 years agognu: Add java-forester.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:39 +0000 (19:41 +0100)]
gnu: Add java-forester.

* gnu/packages/bioinformatics.scm (java-forester): New variable.

6 years agognu: Add java-openchart2.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:38 +0000 (19:41 +0100)]
gnu: Add java-openchart2.

* gnu/packages/java.scm (java-openchart2): New variable.

6 years agognu: Add java-biojava-core.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:37 +0000 (19:41 +0100)]
gnu: Add java-biojava-core.

* gnu/packages/bioinformatics.scm (java-biojava-core): New variable.

6 years agognu: Add java-jdistlib.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:36 +0000 (19:41 +0100)]
gnu: Add java-jdistlib.

* gnu/packages/statistics.scm (java-jdistlib): New variable.

6 years agognu: Add java-jtransforms.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:35 +0000 (19:41 +0100)]
gnu: Add java-jtransforms.

* gnu/packages/algebra.scm (java-jtransforms): New variable.

6 years agognu: Add java-jlargearrays.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:34 +0000 (19:41 +0100)]
gnu: Add java-jlargearrays.

* gnu/packages/algebra.scm (java-jlargearrays): New variable.

6 years agognu: Add java-la4j.
Ricardo Wurmus [Thu, 1 Mar 2018 18:41:33 +0000 (19:41 +0100)]
gnu: Add java-la4j.

* gnu/packages/algebra.scm (java-la4j): New variable.

6 years agognu: Add fastqc.
Ricardo Wurmus [Fri, 23 Feb 2018 09:56:49 +0000 (10:56 +0100)]
gnu: Add fastqc.

* gnu/packages/bioinformatics.scm (fastqc): New variable.

6 years agognu: Add java-cisd-jhdf5.
Ricardo Wurmus [Fri, 23 Feb 2018 09:10:12 +0000 (10:10 +0100)]
gnu: Add java-cisd-jhdf5.

* gnu/packages/java.scm (java-cisd-jhdf5): New variable.

6 years agognu: Add java-cisd-args4j.
Ricardo Wurmus [Fri, 23 Feb 2018 09:09:50 +0000 (10:09 +0100)]
gnu: Add java-cisd-args4j.

* gnu/packages/java.scm (java-cisd-args4j): New variable.

6 years agognu: Add java-cisd-base.
Ricardo Wurmus [Wed, 22 Nov 2017 18:25:34 +0000 (19:25 +0100)]
gnu: Add java-cisd-base.

* gnu/packages/java.scm (java-cisd-base): New variable.

6 years agognu: Add texlive-fonts-iwona.
Ricardo Wurmus [Sun, 10 Dec 2017 21:26:47 +0000 (22:26 +0100)]
gnu: Add texlive-fonts-iwona.

* gnu/packages/tex.scm (texlive-fonts-iwona): New variable.

6 years agoservices: messaging: Prosody config supports file-like objects.
Clément Lassieur [Mon, 26 Feb 2018 00:12:24 +0000 (01:12 +0100)]
services: messaging: Prosody config supports file-like objects.

* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/configuration.scm (serialize-configuration,
serialize-maybe-stem, serialize-package): Return strings or string-valued
gexps (these procedures were only used for their side-effects).
* gnu/services/messaging.scm (serialize-field, serialize-field-list,
enclose-quotes, serialize-raw-content, serialize-ssl-configuration,
serialize-virtualhost-configuration-list,
serialize-int-component-configuration-list,
serialize-ext-component-configuration-list,
serialize-virtualhost-configuration, serialize-int-component-configuration,
serialize-ext-component-configuration, serialize-prosody-configuration):
Return strings or string-valued gexps and stop printing.
(prosody-activation): Use SERIALIZE-PROSODY-CONFIGURATION's return value with
MIXED-TEXT-FILE instead of using its output with PLAIN-FILE.
(serialize-non-negative-integer, serialize-non-negative-integer-list): Convert
numbers to strings.
(file-object?, serialize-file-object, file-object-list?,
serialize-file-object-list): New procedures.
(ssl-configuration)[capath, cafile], (prosody-configuration)[plugin-paths,
groups-file]: Replace FILE-NAME with FILE-OBJECT.
* guix/gexp.scm (file-like?): New exported procedure.

6 years agognu: dictionaries: Add copyright line.
Nicolas Goaziou [Sat, 3 Mar 2018 13:23:17 +0000 (14:23 +0100)]
gnu: dictionaries: Add copyright line.

* gnu/packages/dictionaries.scm: Add copyright line.

6 years agognu: wireshark: Update to 2.4.5.
Nicolas Goaziou [Sat, 3 Mar 2018 13:21:20 +0000 (14:21 +0100)]
gnu: wireshark: Update to 2.4.5.

* gnu/packages/networking.scm (wireshark): Update to 2.4.5.

6 years agognu: grammalecte: Update to 0.6.2.
Nicolas Goaziou [Sat, 3 Mar 2018 13:06:43 +0000 (14:06 +0100)]
gnu: grammalecte: Update to 0.6.2.

* gnu/packages/dictionaries.scm (grammalecte): Update to 0.6.2.
[arguments]: Remove.

6 years agognu: Add ruby-iruby.
Christopher Baines [Tue, 10 Oct 2017 19:07:20 +0000 (20:07 +0100)]
gnu: Add ruby-iruby.

* gnu/packages/ruby.scm (ruby-iruby): New variable.

6 years agognu: Add ruby-mimemagic.
Christopher Baines [Tue, 10 Oct 2017 19:09:45 +0000 (20:09 +0100)]
gnu: Add ruby-mimemagic.

* gnu/packages/ruby.scm (ruby-mimemagic): New variable.

6 years agognu: Add ruby-data_uri.
Christopher Baines [Tue, 10 Oct 2017 19:09:18 +0000 (20:09 +0100)]
gnu: Add ruby-data_uri.

* gnu/packages/ruby.scm (ruby-data_uri): New variable.

6 years agognu: Add ruby-cztop.
Christopher Baines [Tue, 10 Oct 2017 19:08:09 +0000 (20:08 +0100)]
gnu: Add ruby-cztop.

* gnu/packages/ruby.scm (ruby-cztop): New variable.