jackhill/guix/guix.git
4 years agognu: Add abcl.
Carlo Zancanaro [Tue, 17 Sep 2019 12:01:01 +0000 (22:01 +1000)]
gnu: Add abcl.

* gnu/packages/java.scm (abcl): New variable.
* gnu/packages/patches/abcl-fix-build-xml.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
4 years agopull: Do not use '~*', which 'msgfmt' fails to interpret.
Ludovic Courtès [Tue, 1 Oct 2019 08:46:16 +0000 (10:46 +0200)]
pull: Do not use '~*', which 'msgfmt' fails to interpret.

Fixes <https://bugs.gnu.org/37505>.
Reported by Konrad Hinsen <konrad.hinsen@fastmail.net>.

* guix/scripts/pull.scm (display-channel-news): Use ~a instead of ~*
when reporting new channels.

4 years agoui: 'show-what-to-build' colorizes store file names.
Ludovic Courtès [Tue, 1 Oct 2019 08:45:05 +0000 (10:45 +0200)]
ui: 'show-what-to-build' colorizes store file names.

* guix/ui.scm (colorize-store-file-name): New procedure.
(show-what-to-build)[colorize-store-item]: New variable.
Use it throughout.

4 years agognu: Add emacs-handle.
Brian Leung [Tue, 1 Oct 2019 03:57:53 +0000 (05:57 +0200)]
gnu: Add emacs-handle.

* gnu/packages/emacs-xyz.scm (emacs-handle): New variable.

4 years agognu: emacs-compdef: Update to 0.2-2.67104a3.
Brian Leung [Mon, 30 Sep 2019 18:41:10 +0000 (20:41 +0200)]
gnu: emacs-compdef: Update to 0.2-2.67104a3.

* gnu/packages/emacs-xyz.scm (emacs-compdef): Update to 0.2-2.67104a3.

4 years agognu: Add mcrl2-minimal.
Jan Nieuwenhuizen [Mon, 30 Sep 2019 19:26:56 +0000 (21:26 +0200)]
gnu: Add mcrl2-minimal.

* gnu/packages/maths.scm (mcrl2-minimal): New variable.

4 years agognu: mcrl2: Update to 201908.0.
Jan Nieuwenhuizen [Mon, 30 Sep 2019 19:26:19 +0000 (21:26 +0200)]
gnu: mcrl2: Update to 201908.0.

* gnu/packages/maths.scm (mcrl2): Update to 201908.0.

4 years agognu: bubblewrap: Update to 0.3.3.
Marius Bakke [Sun, 29 Sep 2019 19:25:41 +0000 (21:25 +0200)]
gnu: bubblewrap: Update to 0.3.3.

* gnu/packages/virtualization.scm (bubblewrap): Update to 0.3.3.
[arguments]: Adjust test substitutions.

4 years agognu: %default-extra-linux-options: Ensure namespaces are enabled in all
Vagrant Cascadian [Sun, 29 Sep 2019 17:11:50 +0000 (10:11 -0700)]
gnu: %default-extra-linux-options: Ensure namespaces are enabled in all
linux-libre kernels.

The linux-libre kernels using defconfig may not have namespaces enabled, which
is needed for the default guix-daemon configuration in Guix System.

* gnu/packages/linux (%default-extra-linux-options): Enable CONFIG_NAMESPACES,
  CONFIG_UTS_NS, CONFIG_IPC_NS, CONFIG_USER_NS, CONFIG_PID_NS, and
  CONFIG_NET_NS.

4 years agognu: emacs-org-ql: Update to 0.2.1.
Brian Leung [Sun, 29 Sep 2019 21:20:33 +0000 (23:20 +0200)]
gnu: emacs-org-ql: Update to 0.2.1.

* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.2.1.

4 years agognu: Add "guile3.0-" package variants.
Ludovic Courtès [Sun, 29 Sep 2019 20:27:42 +0000 (22:27 +0200)]
gnu: Add "guile3.0-" package variants.

* gnu/packages/guile.scm (package-for-guile-3.0): New procedure.
(guile3.0-json, guile3.0-gdbm-ffi, guile3.0-bytestructures): New
variables.
* gnu/packages/gnupg.scm (guile3.0-gcrypt): New variable.
* gnu/packages/guile-xyz.scm (guile3.0-minikanren, guile3.0-irregex):
New variables.

4 years agosyscalls: 'define-as-needed' does not re-export local variables.
Ludovic Courtès [Thu, 18 Jul 2019 22:52:36 +0000 (00:52 +0200)]
syscalls: 'define-as-needed' does not re-export local variables.

Fixes <https://bugs.gnu.org/36723>.
Reported by Timothy Sample <samplet@ngyro.com>.

* guix/build/syscalls.scm (define-as-needed): Rewrite to use lower-level
module primitives; define VARIABLE only if it's not already defined to
avoid "re-exporting local variable" error.

4 years agognu: Remove deprecated "guile2.2-" packages.
Ludovic Courtès [Sat, 28 Sep 2019 21:25:29 +0000 (23:25 +0200)]
gnu: Remove deprecated "guile2.2-" packages.

These had been deprecated since Dec. 2017.

* gnu/packages/guile-xyz.scm (guile2.2-reader, guile2.2-lib)
(guile2.2-minikanren, guile2.2-irregex, guile2.2-haunt)
(guile2.2-redis, guile2.2-commonmark): Remove.
* gnu/packages/guile.scm (guile2.2-json, guile2.2-gdbm-ffi): Remove.
* gnu/packages/ssh.scm (guile2.2-ssh): Remove.
* gnu/packages/tls.scm (gnutls/guile-2.2): Remove.

4 years agognu: giac: Update to 1.5.0-65.
Nicolas Goaziou [Sun, 29 Sep 2019 16:41:39 +0000 (18:41 +0200)]
gnu: giac: Update to 1.5.0-65.

* gnu/packages/algebra.scm (giac): Update to 1.5.0-65.

4 years agognu: font-util: Update to 1.3.2.
Tobias Geerinckx-Rice [Sun, 29 Sep 2019 15:34:56 +0000 (17:34 +0200)]
gnu: font-util: Update to 1.3.2.

* gnu/packages/xorg.scm (font-util): Update to 1.3.2.

4 years agognu: libgee: Update to 0.20.2.
Tobias Geerinckx-Rice [Sun, 29 Sep 2019 15:33:00 +0000 (17:33 +0200)]
gnu: libgee: Update to 0.20.2.

* gnu/packages/gnome.scm (libgee): Update to 0.20.2.

4 years agognu: cogl: Update to 1.22.4.
Tobias Geerinckx-Rice [Sun, 29 Sep 2019 15:32:58 +0000 (17:32 +0200)]
gnu: cogl: Update to 1.22.4.

* gnu/packages/gnome.scm (cogl): Update to 1.22.4.

4 years agognu: Add xftwidth.
Kyle Andrews [Sun, 29 Sep 2019 14:06:49 +0000 (10:06 -0400)]
gnu: Add xftwidth.

* gnu/packages/xdisorg.scm: added xftwidth package.

4 years agognu: geocode-glib: Update to 3.26.1.
Tobias Geerinckx-Rice [Sun, 29 Sep 2019 15:11:50 +0000 (17:11 +0200)]
gnu: geocode-glib: Update to 3.26.1.

* gnu/packages/gnome.scm (geocode-glib): Update to 3.26.1.

4 years agognu: znc: Update to 1.7.5.
Tobias Geerinckx-Rice [Sun, 29 Sep 2019 15:11:02 +0000 (17:11 +0200)]
gnu: znc: Update to 1.7.5.

* gnu/packages/messaging.scm (znc): Update to 1.7.5.

4 years agognu: libgee: Don't use NAME in source URI.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 20:26:06 +0000 (22:26 +0200)]
gnu: libgee: Don't use NAME in source URI.

* gnu/packages/gnome.scm (libgee)[source]: Hard-code NAME.

4 years agognu: cogl: Don't use NAME in source URI.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 20:25:49 +0000 (22:25 +0200)]
gnu: cogl: Don't use NAME in source URI.

* gnu/packages/gnome.scm (cogl)[source]: Hard-code NAME.

4 years agognu: geocode-glib: Don't use NAME in source URI.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 20:25:20 +0000 (22:25 +0200)]
gnu: geocode-glib: Don't use NAME in source URI.

* gnu/packages/gnome.scm (geocode-glib)[source]: Hard-code NAME.

4 years agognu: emacs-on-screen: Update to 1.3.3.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 20:09:10 +0000 (22:09 +0200)]
gnu: emacs-on-screen: Update to 1.3.3.

* gnu/packages/emacs-xyz.scm (emacs-on-screen): Update to 1.3.3.

4 years agognu: emacs-dired-du: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 20:08:24 +0000 (22:08 +0200)]
gnu: emacs-dired-du: Use HTTPS home page.

* gnu/packages/emacs-xyz.scm (emacs-dired-du)[home-page]: Use HTTPS.

4 years agognu: emacs-dired-du: Update to 0.5.2.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 20:06:31 +0000 (22:06 +0200)]
gnu: emacs-dired-du: Update to 0.5.2.

* gnu/packages/emacs-xyz.scm (emacs-dired-du): Update to 0.5.2.

4 years agognu: perl-carp-clan: Update to 6.08.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 19:47:54 +0000 (21:47 +0200)]
gnu: perl-carp-clan: Update to 6.08.

* gnu/packages/perl.scm (perl-carp-clan): Update to 6.08.

4 years agognu: mame: Update to 0.214.
Nicolas Goaziou [Sun, 29 Sep 2019 13:25:13 +0000 (15:25 +0200)]
gnu: mame: Update to 0.214.

* gnu/packages/emulators.scm (mame): Update to 0.214.
[source]: Remove unnecessary patch.
* gnu/packages/patches/mame-rapidjson-fix.patch: Delete file.
* gnu/local.mk: Remove reference to deleted patch.

4 years agognu: screenfetch: Update to 3.8.0-2.e7b94fc.
Efraim Flashner [Sun, 29 Sep 2019 11:44:06 +0000 (14:44 +0300)]
gnu: screenfetch: Update to 3.8.0-2.e7b94fc.

* gnu/packages/admin.scm (screenfetch): Update to 3.8.0-2.e7b94fc.

4 years agognu: sbcl: Update to 1.5.7.
Pierre Neidhardt [Sun, 29 Sep 2019 08:36:00 +0000 (10:36 +0200)]
gnu: sbcl: Update to 1.5.7.

* gnu/packages/lisp.scm (sbcl): Update to 1.5.7.

4 years agodoc: Add a 'Upgrading Guix' section to the 'Installation' chapter.
Maxim Cournoyer [Fri, 27 Sep 2019 15:11:28 +0000 (00:11 +0900)]
doc: Add a 'Upgrading Guix' section to the 'Installation' chapter.

This follows a discussion regarding issue #36785 (see:
https://bugs.gnu.org/36785).

* doc/guix.texi (Upgrading Guix): New section.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
4 years agognu: emacs-tablist: Update to 1.0.
Brian Leung [Sun, 29 Sep 2019 01:09:36 +0000 (03:09 +0200)]
gnu: emacs-tablist: Update to 1.0.

* gnu/packages/emacs-xyz.scm (emacs-tablist): Update to 1.0.

4 years agognu: emacs-prescient: Update to 3.3.
Brian Leung [Sun, 29 Sep 2019 00:09:54 +0000 (02:09 +0200)]
gnu: emacs-prescient: Update to 3.3.

* gnu/packages/emacs-xyz.scm (emacs-prescient): Update to 3.3.

4 years agognu: emacs-hydra: Enable test.
Brian Leung [Sat, 28 Sep 2019 23:59:22 +0000 (01:59 +0200)]
gnu: emacs-hydra: Enable test.

* gnu/packages/emacs-xyz.scm (emacs-hydra): Enable test.

4 years agognu: emacs-helm-company: Enable test.
Brian Leung [Sat, 28 Sep 2019 23:56:26 +0000 (01:56 +0200)]
gnu: emacs-helm-company: Enable test.

* gnu/packages/emacs-xyz.scm (emacs-helm-company): Enable test.

4 years agognu: Add ell.
Brice Waegeneire [Thu, 26 Sep 2019 21:44:30 +0000 (23:44 +0200)]
gnu: Add ell.

* gnu/packages/linux.scm (ell): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
4 years agognu: gpodder: Update to 3.10.10.
Pierre Langlois [Fri, 27 Sep 2019 08:43:43 +0000 (09:43 +0100)]
gnu: gpodder: Update to 3.10.10.

* gnu/packages/gpodder.scm (gpodder): Update to 3.10.10.
[inputs]: Add youtube-dl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
4 years agodaemon: Strictly respect timeouts for 'guix offload'.
Ludovic Courtès [Sat, 28 Sep 2019 16:06:15 +0000 (18:06 +0200)]
daemon: Strictly respect timeouts for 'guix offload'.

Until now it was up to 'guix offload' to honor timeouts.  Unfortunately
it would sometimes fail to do that, for example due to the libssh bug at
<https://bugs.libssh.org/T33>.  With this change, 'guix offload' is
automatically killed by the daemon when one of the timeouts expires.

Thus, data transfers performed by 'guix offload' now count as part of
the timeouts, rather than just actual build time.

* nix/libstore/build.cc (DerivationGoal::tryBuildHook): Pass true as the
'respectTimeouts' argument to 'childStarted'.

4 years agooffload: Include the port number in the machine lock file name.
Ludovic Courtès [Sat, 28 Sep 2019 15:22:39 +0000 (17:22 +0200)]
offload: Include the port number in the machine lock file name.

This is useful when a single machine appears several time, with
different port numbers.

* guix/scripts/offload.scm (machine-slot-file): Add MACHINE's port to
the file name.

4 years agognu: libssh: Update to 0.9.0.
Ludovic Courtès [Sat, 28 Sep 2019 15:20:51 +0000 (17:20 +0200)]
gnu: libssh: Update to 0.9.0.

* gnu/packages/ssh.scm (libssh): Update to 0.9.0.  Of particular
interest for robust offloading is libssh commit
e4e51ccc1340e313c203842d0180a1c4e33c95cc, which fixes a bug whereby,
instead of honoring the per-session timeout, 'ssh_channel_read_timeout'
would end up passing an infinite timeout to 'poll':
see <https://bugs.libssh.org/T33>

4 years agognu: emacs-mbsync: Update to 0.1.2-3.8f80c26.
Oleg Pykhalov [Sat, 28 Sep 2019 20:11:28 +0000 (23:11 +0300)]
gnu: emacs-mbsync: Update to 0.1.2-3.8f80c26.

This commit follows 7dd9f6e7cf8e893b75faa1253a451609f7fcc5fc.

* gnu/packages/emacs-xyz.scm (emacs-mbsync): Update to 0.1.2-3.8f80c26.

4 years agognu: emacs-mbsync: Update to 0.1.2-2.8f80c26.
Oleg Pykhalov [Sat, 28 Sep 2019 20:08:52 +0000 (23:08 +0300)]
gnu: emacs-mbsync: Update to 0.1.2-2.8f80c26.

* gnu/packages/emacs-xyz.scm (emacs-mbsync): Update to 0.1.2-2.8f80c26.

4 years agognu: emacs-docker: Update to 1.3.0.
Brian Leung [Sat, 28 Sep 2019 17:37:05 +0000 (19:37 +0200)]
gnu: emacs-docker: Update to 1.3.0.

* gnu/packages/emacs-xyz.scm (emacs-docker): Update to 1.3.0.

4 years agognu: emacs-dockerfile-mode: Update to 1.2-2.ed73e82.
Brian Leung [Sat, 28 Sep 2019 17:34:38 +0000 (19:34 +0200)]
gnu: emacs-dockerfile-mode: Update to 1.2-2.ed73e82.

* gnu/packages/emacs-xyz.scm (emacs-dockerfile-mode): Update to 1.2-2.ed73e82.

4 years agognu: emacs-org-download: Update to 0.1.0-2.10c9d7c.
Brian Leung [Sat, 28 Sep 2019 17:29:32 +0000 (19:29 +0200)]
gnu: emacs-org-download: Update to 0.1.0-2.10c9d7c.

* gnu/packages/emacs-xyz.scm (emacs-org-download): Update to 0.1.0-2.10c9d7c.

4 years agognu: gpxsee: Update to 7.12.
Tobias Geerinckx-Rice [Thu, 29 Aug 2019 13:03:57 +0000 (15:03 +0200)]
gnu: gpxsee: Update to 7.12.

* gnu/packages/gps.scm (gpxsee): Update to 7.12.

4 years agognu: gthumb: Update to 3.8.1.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 15:15:20 +0000 (17:15 +0200)]
gnu: gthumb: Update to 3.8.1.

* gnu/packages/gnome.scm (gthumb): Update to 3.8.1.

4 years agodoc: Don't support a risky mix of Guix & Nix.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 14:47:29 +0000 (16:47 +0200)]
doc: Don't support a risky mix of Guix & Nix.

* doc/guix.texi (Requirements): Remove instructions for sharing a store
and/or a daemon with Nix.

4 years agognu: recode: Update to 3.7.6.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 13:51:56 +0000 (15:51 +0200)]
gnu: recode: Update to 3.7.6.

* gnu/packages/textutils.scm (recode): Update to 3.7.6.
[source]: Remove snippet.

4 years agognu: libmanette: Update to 0.2.3.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 13:26:30 +0000 (15:26 +0200)]
gnu: libmanette: Update to 0.2.3.

* gnu/packages/games.scm (libmanette): Update to 0.2.3.

4 years agognu: libgnome-games-support: Don't use NAME in source URI.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 13:26:10 +0000 (15:26 +0200)]
gnu: libgnome-games-support: Don't use NAME in source URI.

* gnu/packages/gnome.scm (libgnome-games-support)[source]: Hard-code NAME.

4 years agognu: libgnome-games-support: Update to 1.4.4.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 13:26:01 +0000 (15:26 +0200)]
gnu: libgnome-games-support: Update to 1.4.4.

* gnu/packages/gnome.scm (libgnome-games-support): Update to 1.4.4.

4 years agognu: urlscan: Update to 0.9.4.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 12:40:27 +0000 (14:40 +0200)]
gnu: urlscan: Update to 0.9.4.

* gnu/packages/mail.scm (urlscan): Update to 0.9.4.

4 years agognu: fc-host-tools: Improve description.
Danny Milosavljevic [Sat, 28 Sep 2019 13:39:24 +0000 (15:39 +0200)]
gnu: fc-host-tools: Improve description.

* gnu/packages/embedded.scm (fc-host-tools)[description]: Improve description.

4 years agognu: fc-host-tools: Update to 11.
Danny Milosavljevic [Sat, 28 Sep 2019 13:25:50 +0000 (15:25 +0200)]
gnu: fc-host-tools: Update to 11.

* gnu/packages/embedded.scm (fc-host-tools): Update to 11.
[arguments]<:phases>[handle-tarbomb]: Delete phase.
[patch-installation-paths]: Modify.

4 years agognu: r-gviz: Update to 1.28.3.
Ricardo Wurmus [Sat, 28 Sep 2019 10:23:44 +0000 (12:23 +0200)]
gnu: r-gviz: Update to 1.28.3.

* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.28.3.

4 years agognu: r-mzr: Update to 2.18.1.
Ricardo Wurmus [Sat, 28 Sep 2019 10:23:39 +0000 (12:23 +0200)]
gnu: r-mzr: Update to 2.18.1.

* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.18.1.

4 years agognu: r-rhtslib: Update to 1.16.2.
Ricardo Wurmus [Sat, 28 Sep 2019 10:23:29 +0000 (12:23 +0200)]
gnu: r-rhtslib: Update to 1.16.2.

* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.16.2.

4 years agognu: r-rsamtools: Update to 2.0.1.
Ricardo Wurmus [Sat, 28 Sep 2019 10:23:26 +0000 (12:23 +0200)]
gnu: r-rsamtools: Update to 2.0.1.

* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.1.

4 years agognu: r-iranges: Update to 2.18.3.
Ricardo Wurmus [Sat, 28 Sep 2019 10:23:22 +0000 (12:23 +0200)]
gnu: r-iranges: Update to 2.18.3.

* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.3.

4 years agognu: r-dt: Update to 0.9.
Ricardo Wurmus [Sat, 28 Sep 2019 10:23:17 +0000 (12:23 +0200)]
gnu: r-dt: Update to 0.9.

* gnu/packages/statistics.scm (r-dt): Update to 0.9.

4 years agognu: r-lambda-r: Update to 1.2.4.
Ricardo Wurmus [Sat, 28 Sep 2019 10:23:13 +0000 (12:23 +0200)]
gnu: r-lambda-r: Update to 1.2.4.

* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.4.

4 years agognu: r-pkgconfig: Update to 2.0.3.
Ricardo Wurmus [Sat, 28 Sep 2019 10:23:09 +0000 (12:23 +0200)]
gnu: r-pkgconfig: Update to 2.0.3.

* gnu/packages/statistics.scm (r-pkgconfig): Update to 2.0.3.

4 years agognu: r-devtools: Update to 2.2.1.
Ricardo Wurmus [Sat, 28 Sep 2019 10:22:56 +0000 (12:22 +0200)]
gnu: r-devtools: Update to 2.2.1.

* gnu/packages/statistics.scm (r-devtools): Update to 2.2.1.
[propagated-inputs]: Add r-rlang.

4 years agognu: r-microbenchmark: Update to 1.4-7.
Ricardo Wurmus [Sat, 28 Sep 2019 10:22:45 +0000 (12:22 +0200)]
gnu: r-microbenchmark: Update to 1.4-7.

* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-7.

4 years agognu: r-knitr: Update to 1.25.
Ricardo Wurmus [Sat, 28 Sep 2019 10:22:41 +0000 (12:22 +0200)]
gnu: r-knitr: Update to 1.25.

* gnu/packages/statistics.scm (r-knitr): Update to 1.25.

4 years agognu: r-digest: Update to 0.6.21.
Ricardo Wurmus [Sat, 28 Sep 2019 10:22:37 +0000 (12:22 +0200)]
gnu: r-digest: Update to 0.6.21.

* gnu/packages/statistics.scm (r-digest): Update to 0.6.21.

4 years agognu: r-mgcv: Update to 1.8-29.
Ricardo Wurmus [Sat, 28 Sep 2019 10:22:33 +0000 (12:22 +0200)]
gnu: r-mgcv: Update to 1.8-29.

* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-29.

4 years agognu: r-assertable: Update to 0.2.7.
Ricardo Wurmus [Sat, 28 Sep 2019 10:22:27 +0000 (12:22 +0200)]
gnu: r-assertable: Update to 0.2.7.

* gnu/packages/cran.scm (r-assertable): Update to 0.2.7.

4 years agognu: r-parameters: Update to 0.2.0.
Ricardo Wurmus [Sat, 28 Sep 2019 10:22:23 +0000 (12:22 +0200)]
gnu: r-parameters: Update to 0.2.0.

* gnu/packages/cran.scm (r-parameters): Update to 0.2.0.

4 years agognu: r-uwot: Update to 0.1.4.
Ricardo Wurmus [Sat, 28 Sep 2019 10:22:18 +0000 (12:22 +0200)]
gnu: r-uwot: Update to 0.1.4.

* gnu/packages/cran.scm (r-uwot): Update to 0.1.4.

4 years agognu: r-optparse: Update to 1.6.4.
Ricardo Wurmus [Sat, 28 Sep 2019 10:22:14 +0000 (12:22 +0200)]
gnu: r-optparse: Update to 1.6.4.

* gnu/packages/cran.scm (r-optparse): Update to 1.6.4.

4 years agognu: r-spdep: Update to 1.1-3.
Ricardo Wurmus [Sat, 28 Sep 2019 10:22:09 +0000 (12:22 +0200)]
gnu: r-spdep: Update to 1.1-3.

* gnu/packages/cran.scm (r-spdep): Update to 1.1-3.

4 years agognu: r-sf: Update to 0.8-0.
Ricardo Wurmus [Sat, 28 Sep 2019 10:22:04 +0000 (12:22 +0200)]
gnu: r-sf: Update to 0.8-0.

* gnu/packages/cran.scm (r-sf): Update to 0.8-0.

4 years agognu: r-spdata: Update to 0.3.2.
Ricardo Wurmus [Sat, 28 Sep 2019 10:22:00 +0000 (12:22 +0200)]
gnu: r-spdata: Update to 0.3.2.

* gnu/packages/cran.scm (r-spdata): Update to 0.3.2.

4 years agognu: r-tidytree: Update to 0.2.8.
Ricardo Wurmus [Sat, 28 Sep 2019 10:21:56 +0000 (12:21 +0200)]
gnu: r-tidytree: Update to 0.2.8.

* gnu/packages/cran.scm (r-tidytree): Update to 0.2.8.

4 years agognu: r-rcpphnsw: Update to 0.2.0.
Ricardo Wurmus [Sat, 28 Sep 2019 10:21:51 +0000 (12:21 +0200)]
gnu: r-rcpphnsw: Update to 0.2.0.

* gnu/packages/cran.scm (r-rcpphnsw): Update to 0.2.0.

4 years agognu: r-rcppannoy: Update to 0.0.13.
Ricardo Wurmus [Sat, 28 Sep 2019 10:21:47 +0000 (12:21 +0200)]
gnu: r-rcppannoy: Update to 0.0.13.

* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.13.

4 years agognu: r-bayestestr: Update to 0.3.0.
Ricardo Wurmus [Sat, 28 Sep 2019 10:21:42 +0000 (12:21 +0200)]
gnu: r-bayestestr: Update to 0.3.0.

* gnu/packages/cran.scm (r-bayestestr): Update to 0.3.0.

4 years agognu: r-raster: Update to 3.0-7.
Ricardo Wurmus [Sat, 28 Sep 2019 10:21:38 +0000 (12:21 +0200)]
gnu: r-raster: Update to 3.0-7.

* gnu/packages/cran.scm (r-raster): Update to 3.0-7.

4 years agognu: r-sjmisc: Update to 2.8.2.
Ricardo Wurmus [Sat, 28 Sep 2019 10:21:23 +0000 (12:21 +0200)]
gnu: r-sjmisc: Update to 2.8.2.

* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.2.
[propagated-inputs]: Add r-tidyselect.

4 years agognu: r-shinyace: Update to 0.4.1.
Ricardo Wurmus [Sat, 28 Sep 2019 10:21:17 +0000 (12:21 +0200)]
gnu: r-shinyace: Update to 0.4.1.

* gnu/packages/cran.scm (r-shinyace): Update to 0.4.1.

4 years agognu: r-ttr: Update to 0.23-5.
Ricardo Wurmus [Sat, 28 Sep 2019 10:21:01 +0000 (12:21 +0200)]
gnu: r-ttr: Update to 0.23-5.

* gnu/packages/cran.scm (r-ttr): Update to 0.23-5.
[native-inputs]: Remove gfortran.

4 years agognu: r-tinytex: Update to 0.16.
Ricardo Wurmus [Sat, 28 Sep 2019 10:20:51 +0000 (12:20 +0200)]
gnu: r-tinytex: Update to 0.16.

* gnu/packages/cran.scm (r-tinytex): Update to 0.16.

4 years agognu: r-recipes: Update to 0.1.7.
Ricardo Wurmus [Sat, 28 Sep 2019 10:20:47 +0000 (12:20 +0200)]
gnu: r-recipes: Update to 0.1.7.

* gnu/packages/cran.scm (r-recipes): Update to 0.1.7.

4 years agognu: r-curl: Update to 4.2.
Ricardo Wurmus [Sat, 28 Sep 2019 10:20:43 +0000 (12:20 +0200)]
gnu: r-curl: Update to 4.2.

* gnu/packages/cran.scm (r-curl): Update to 4.2.

4 years agognu: r-htmltable: Update to 1.13.2.
Ricardo Wurmus [Sat, 28 Sep 2019 10:20:38 +0000 (12:20 +0200)]
gnu: r-htmltable: Update to 1.13.2.

* gnu/packages/cran.scm (r-htmltable): Update to 1.13.2.

4 years agognu: r-callr: Update to 3.3.2.
Ricardo Wurmus [Sat, 28 Sep 2019 10:20:34 +0000 (12:20 +0200)]
gnu: r-callr: Update to 3.3.2.

* gnu/packages/cran.scm (r-callr): Update to 3.3.2.

4 years agognu: r-ellipsis: Update to 0.3.0.
Ricardo Wurmus [Sat, 28 Sep 2019 10:20:25 +0000 (12:20 +0200)]
gnu: r-ellipsis: Update to 0.3.0.

* gnu/packages/cran.scm (r-ellipsis): Update to 0.3.0.

4 years agognu: Add stapler.
Arun Isaac [Mon, 9 Sep 2019 14:36:37 +0000 (20:06 +0530)]
gnu: Add stapler.

* gnu/packages/pdf.scm (stapler): New variable.

4 years agocompile: Fix race condition on completion progress.
Eric Bavier [Wed, 25 Sep 2019 01:57:34 +0000 (20:57 -0500)]
compile: Fix race condition on completion progress.

This prevent a race condition where multiple compilation threads could report
the same progress.

* guix/build/compile.scm (compile-files)<completed>: Rename to...
<progress>: ...this.  Increment in same mutex region as the compilation is
reported.

4 years agognu: z3: Update to 4.8.6.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 01:39:26 +0000 (03:39 +0200)]
gnu: z3: Update to 4.8.6.

* gnu/packages/maths.scm (z3): Update to 4.8.6.

4 years agognu: xtensor: Use HTTPS home page.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 01:39:17 +0000 (03:39 +0200)]
gnu: xtensor: Use HTTPS home page.

* gnu/packages/algebra.scm (xtensor)[home-page]: Use HTTPS.

4 years agognu: xtensor: Update to 0.20.9.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 01:38:50 +0000 (03:38 +0200)]
gnu: xtensor: Update to 0.20.9.

* gnu/packages/algebra.scm (xtensor): Update to 0.20.9.

4 years agognu: xtl: Update to 0.6.7.
Tobias Geerinckx-Rice [Sat, 28 Sep 2019 01:36:51 +0000 (03:36 +0200)]
gnu: xtl: Update to 0.6.7.

* gnu/packages/cpp.scm (xtl): Update to 0.6.7.

4 years agognu: smu: Don't use unstable tarball.
Tobias Geerinckx-Rice [Fri, 27 Sep 2019 23:23:59 +0000 (01:23 +0200)]
gnu: smu: Don't use unstable tarball.

* gnu/packages/markup.scm (smu)[source]: Use GIT-FETCH and
GIT-FILE-NAME.

4 years agognu: smu: Update to 1.5.
Tobias Geerinckx-Rice [Fri, 27 Sep 2019 23:21:51 +0000 (01:21 +0200)]
gnu: smu: Update to 1.5.

* gnu/packages/markup.scm (smu): Update to 1.5.

4 years agognu: youtube-viewer: Update to 3.5.8.
Tobias Geerinckx-Rice [Fri, 27 Sep 2019 18:51:41 +0000 (20:51 +0200)]
gnu: youtube-viewer: Update to 3.5.8.

* gnu/packages/video.scm (youtube-viewer): Update to 3.5.8.

4 years agognu: ubridge: Update to 0.9.16.
Tobias Geerinckx-Rice [Fri, 27 Sep 2019 18:51:38 +0000 (20:51 +0200)]
gnu: ubridge: Update to 0.9.16.

* gnu/packages/networking.scm (ubridge): Update to 0.9.16.

4 years agognu: dealii: Update to 9.1.1.
Eric Bavier [Sat, 28 Sep 2019 03:19:39 +0000 (22:19 -0500)]
gnu: dealii: Update to 9.1.1.

* gnu/packages/maths.scm (dealii): Update to 9.1.1.
[source]: Remove patch no longer needed.
* gnu/local.mk (dist_patch_DATA): ditto.
* gnu/packages/patches/dealii-mpi-deprecations.patch: Delete it.