jackhill/guix/guix.git
7 years agognu: lua: Update to 5.3.3.
Marius Bakke [Mon, 31 Oct 2016 13:02:59 +0000 (13:02 +0000)]
gnu: lua: Update to 5.3.3.

* gnu/packages/patches/lua52-liblua-so.patch: Rename to ...
* gnu/packages/patches/lua-liblua-so.patch: ... this. Add version comment.
* gnu/local.mk (dist_patch_DATA): Adjust patch name.
* gnu/packages/lua.scm (lua): Update to 5.3.3.
[source]: Use https URL. Use new patch name.
[home-page]: Use https URL.
(lua-5.2): New variable.
(lua-5.1)[source]: Use https URL.

7 years agognu: build: file-system: Change url of LUKS specification.
ng0 [Sun, 6 Nov 2016 11:29:36 +0000 (11:29 +0000)]
gnu: build: file-system: Change url of LUKS specification.

* gnu/build/file-system.scm: Change url of LUKS specification.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
7 years agognu: pingus: Update upstream location.
ng0 [Sun, 6 Nov 2016 11:29:35 +0000 (11:29 +0000)]
gnu: pingus: Update upstream location.

* gnu/packages/games.scm (pingus)[source]: Update source uri.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
7 years agognu: r-proto: Update project's home-page.
ng0 [Sun, 6 Nov 2016 11:29:34 +0000 (11:29 +0000)]
gnu: r-proto: Update project's home-page.

* gnu/packages/statistics.scm (r-proto)[home-page]: Update project's home-page.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
7 years agognu: java-hamcrest-core: Fix build.
Hartmut Goebel [Sun, 6 Nov 2016 10:49:12 +0000 (11:49 +0100)]
gnu: java-hamcrest-core: Fix build.

Since we now remove the directory "lib" from the source, we need to
create a directory where build.xml searches for .jar-files.

* gnu/packages/java.scm (java-hamcrest-core)[pahases]: New phase
  create-dummy-directories.

7 years agognu: java-hamcrest-core: Remove wrong source file-name.
Hartmut Goebel [Sun, 6 Nov 2016 09:55:08 +0000 (10:55 +0100)]
gnu: java-hamcrest-core: Remove wrong source file-name.

The sources file-name was set to "java-hamcrest-core", while it contains
not only the "core" but all of hamcrest. Further the source archive
already has the correct name.

* gnu/packages/java.scm (java-hamcrest-core)[source]: Remove file-name.

7 years agognu: java-hamcrest-core: Update upstream location.
Hartmut Goebel [Sun, 6 Nov 2016 09:42:57 +0000 (10:42 +0100)]
gnu: java-hamcrest-core: Update upstream location.

The checksum changed since the new location's archive contains no
jar-files (except those of external libraries) and line endings are
different.

* gnu/packages/java.scm (java-hamcrest-core)[source]: Update source
  uri and checksum. [snippet]: Remove directory "lib" completely.

7 years agognu: bullet: Update to 2.85.1.
Efraim Flashner [Sun, 6 Nov 2016 06:44:21 +0000 (08:44 +0200)]
gnu: bullet: Update to 2.85.1.

* gnu/packages/game-development.scm (bullet): Update to 2.85.1.
[source]: Change to new Github url.
[arguments]: Enable tests, build shared libraries.
[inputs]: Add glu, libx11, mesa.

7 years agognu: epiphany: Update to 3.22.1.
Mark H Weaver [Sun, 6 Nov 2016 07:55:52 +0000 (02:55 -0500)]
gnu: epiphany: Update to 3.22.1.

* gnu/packages/gnome.scm (epiphany): Update to 3.22.1.

7 years agognu: ibus: Update to 1.5.14.
Efraim Flashner [Sat, 5 Nov 2016 21:14:09 +0000 (23:14 +0200)]
gnu: ibus: Update to 1.5.14.

* gnu/packages/ibus.scm (ibus): Update to 1.5.14.
[arguments]: Disable emojis.
[inputs]: Add json-glib.
[home-page]: Use project's new home-page.

7 years agognu: libkate: Update upstream location.
Efraim Flashner [Sat, 5 Nov 2016 20:10:56 +0000 (22:10 +0200)]
gnu: libkate: Update upstream location.

* gnu/packages/xiph.scm (libkate)[source]: Update source uri.
[home-page]: Update project's home-page.

7 years agognu: w3m: Fix the commit string.
ng0 [Sat, 5 Nov 2016 21:07:48 +0000 (21:07 +0000)]
gnu: w3m: Fix the commit string.

* gnu/packages/w3m.scm (w3m)[source]: Fix the commit string.

Signed-off-by: Leo Famulari <leo@famulari.name>
7 years agognu: python-axolotl-curve25519: Fix license.
Leo Famulari [Sat, 5 Nov 2016 20:33:32 +0000 (16:33 -0400)]
gnu: python-axolotl-curve25519: Fix license.

* gnu/packages/python.scm (python-axolotl-curve25519,
python2-axolotl-curve25519)[license]: Replace ISC with BSD-3.

7 years agognu: Add python-axolotl.
Arun Isaac [Thu, 20 Oct 2016 10:15:04 +0000 (15:45 +0530)]
gnu: Add python-axolotl.

* gnu/packages/python.scm (python-axolotl, python2-axolotl): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
7 years agognu: Add python-axolotl-curve25519.
Arun Isaac [Thu, 20 Oct 2016 10:15:03 +0000 (15:45 +0530)]
gnu: Add python-axolotl-curve25519.

* gnu/packages/python.scm (python-axolotl-curve25519,
  python2-axolotl-curve25519): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
7 years agonls: Update 'pt_BR' translation.
Leo Famulari [Sat, 5 Nov 2016 19:19:44 +0000 (15:19 -0400)]
nls: Update 'pt_BR' translation.

7 years agognu: weex: Update to 2.8.2 [fixes CVE-2005-3150].
Leo Famulari [Sat, 5 Nov 2016 17:28:42 +0000 (13:28 -0400)]
gnu: weex: Update to 2.8.2 [fixes CVE-2005-3150].

* gnu/packages/ftp.scm (weex): Update to 2.8.2.
[source]: Use new URL. Remove obsolete 'weex-vacopy.patch'.
[arguments]: Remove custom 'configure' phase and add 'bootstrap' phase.
[native-inputs]: Add autoconf, automake, and gnu-gettext.
* gnu/packages/patches/weex-vacopy.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

7 years agognu: whois: Update to 5.2.13.
Efraim Flashner [Sat, 5 Nov 2016 15:46:55 +0000 (17:46 +0200)]
gnu: whois: Update to 5.2.13.

* gnu/packages/networking.scm (whois): Update to 5.2.13.

7 years agognu: gst-plugins-bad: Update to 1.10.0.
Efraim Flashner [Sat, 5 Nov 2016 15:40:13 +0000 (17:40 +0200)]
gnu: gst-plugins-bad: Update to 1.10.0.

* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.10.0.
[inputs]: Remove wayland.
[tests]: Update comment about failing tests.
[home-page]: Use https.

7 years agognu: jasper: Update to 1.900.19.
Efraim Flashner [Sat, 5 Nov 2016 15:39:11 +0000 (17:39 +0200)]
gnu: jasper: Update to 1.900.19.

* gnu/packages/image.scm (jasper): Update to 1.900.19.
[arguments]: Remove custom make-flags.

7 years agognu: freeipmi: Update to 1.5.5.
Efraim Flashner [Sat, 5 Nov 2016 15:37:58 +0000 (17:37 +0200)]
gnu: freeipmi: Update to 1.5.5.

* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.5.

7 years agognu: python-gst: Update to 1.10.0.
Efraim Flashner [Thu, 3 Nov 2016 18:43:57 +0000 (20:43 +0200)]
gnu: python-gst: Update to 1.10.0.

* gnu/packages/gstreamer.scm (python-gst): Update to 1.10.0.

7 years agognu: gst-libav: Update to 1.10.0.
Efraim Flashner [Thu, 3 Nov 2016 18:42:28 +0000 (20:42 +0200)]
gnu: gst-libav: Update to 1.10.0.

* gnu/packages/gstreamer.scm (gst-libav): Update to 1.10.0.

7 years agognu: gst-plugins-ugly: Update to 1.10.0.
Efraim Flashner [Thu, 3 Nov 2016 18:41:35 +0000 (20:41 +0200)]
gnu: gst-plugins-ugly: Update to 1.10.0.

* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.10.0.

7 years agognu: gst-plugins-good: Update to 1.10.0.
Efraim Flashner [Thu, 3 Nov 2016 18:41:01 +0000 (20:41 +0200)]
gnu: gst-plugins-good: Update to 1.10.0.

* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.0.

7 years agognu: gst-plugins-base: Update to 1.10.0.
Efraim Flashner [Thu, 3 Nov 2016 18:40:18 +0000 (20:40 +0200)]
gnu: gst-plugins-base: Update to 1.10.0.

* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.0.

7 years agognu: gstreamer: Update to 1.10.0.
Efraim Flashner [Thu, 3 Nov 2016 18:39:23 +0000 (20:39 +0200)]
gnu: gstreamer: Update to 1.10.0.

* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.0.

7 years agognu: Add mps-youtube.
ng0 [Fri, 4 Nov 2016 19:23:02 +0000 (19:23 +0000)]
gnu: Add mps-youtube.

* gnu/packages/video.scm (mps-youtube): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
7 years agognu: Add python-pafy.
ng0 [Fri, 4 Nov 2016 19:23:01 +0000 (19:23 +0000)]
gnu: Add python-pafy.

* gnu/packages/python.scm (python-pafy): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
7 years agognu: libidn: Distinguish from libidn2.
Leo Famulari [Sat, 5 Nov 2016 00:06:10 +0000 (20:06 -0400)]
gnu: libidn: Distinguish from libidn2.

* gnu/packages/libidn.scm (libidn)[description]: Add detail to help distinguish
from libidn2.

7 years agognu: Add libidn2.
Leo Famulari [Fri, 4 Nov 2016 15:19:45 +0000 (11:19 -0400)]
gnu: Add libidn2.

* gnu/packages/libidn.scm (libidn2): New variable.

7 years agognu: w3m: Switch to Debian's actively maintained fork of w3m.
Kei Kebreau [Sat, 5 Nov 2016 00:06:03 +0000 (20:06 -0400)]
gnu: w3m: Switch to Debian's actively maintained fork of w3m.

Fixes some security issues seen here:
<http://www.openwall.com/lists/oss-security/2016/11/03/3>

* gnu/packages/w3m.scm (w3m): Switch it.
[source]: Use Debian's git tree. Remove obsolete patches.
[arguments]: Remove an unneeded substitute* function.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch,
gnu/packages/patches/w3m-disable-weak-ciphers.patch,
gnu/packages/patches/w3m-force-ssl_verify_server-on.patch,
gnu/packages/patches/w3m-libgc.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.

7 years agognu: webkitgtk: Update to 2.14.2.
Leo Famulari [Fri, 4 Nov 2016 23:47:47 +0000 (19:47 -0400)]
gnu: webkitgtk: Update to 2.14.2.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.1.

7 years agognu: Add jupyter.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:46 +0000 (13:20 +0100)]
gnu: Add jupyter.

* gnu/packages/python.scm (jupyter): New variable.

7 years agognu: python-ipython: Update to 4.0.0.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:45 +0000 (13:20 +0100)]
gnu: python-ipython: Update to 4.0.0.

* gnu/packages/python.scm (python-ipython): Update to 4.0.0.
[inputs]: Keep only "readline" and "which"; move the remaining inputs
to propagated-inputs, except for "python-requests" and "python-nose"
which are moved to native-inputs.
[propagated-inputs]: Add "python-pexpect", "python-pickleshare",
"python-simplegeneric", "python-traitlets", "python-ipykernel".
[native-inputs]: Add "python-testpath".
[arguments]: Enable building of HTML documentation.
[source]: Remove patch.
* gnu/packages/patches/python-ipython-inputhook-ctype.patch: Remove
patch.
* gnu/local.mk (dist_patch_DATA): Remove it.

7 years agognu: Add python-jupyter-console.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:44 +0000 (13:20 +0100)]
gnu: Add python-jupyter-console.

* gnu/packages/python.scm (python-jupyter-console,
python2-jupyter-console): New variable.

7 years agognu: Add python-ipywidgets.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:43 +0000 (13:20 +0100)]
gnu: Add python-ipywidgets.

* gnu/packages/python.scm (python-ipywidgets, python2-ipywidgets): New
variables.

7 years agognu: Add python-widgetsnbextension.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:42 +0000 (13:20 +0100)]
gnu: Add python-widgetsnbextension.

* gnu/packages/python.scm (python-widgetsnbextension,
python2-widgetsnbextension): New variables.

7 years agognu: Add python-notebook.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:41 +0000 (13:20 +0100)]
gnu: Add python-notebook.

* gnu/packages/python.scm (python-notebook, python2-notebook): New
variables.

7 years agognu: Add python-nbconvert.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:40 +0000 (13:20 +0100)]
gnu: Add python-nbconvert.

* gnu/packages/python.scm (python-nbconvert, python2-nbconvert): New
variables.

7 years agognu: Add python-entrypoints.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:39 +0000 (13:20 +0100)]
gnu: Add python-entrypoints.

* gnu/packages/python.scm (python-entrypoints, python2-entrypoints): New
variables.

7 years agognu: chromium-bsu: Update to 0.9.16.1.
Kei Kebreau [Fri, 4 Nov 2016 15:17:09 +0000 (11:17 -0400)]
gnu: chromium-bsu: Update to 0.9.16.1.

* gnu/packages/games.scm (chromium-bsu): Update to 0.9.16.1.
[arguments]: Remove 'set-sdl-paths phase.
[inputs]: Add gnu-gettext.

7 years agognu: cross-base: Remove exports of cross compilers.
Ludovic Courtès [Fri, 4 Nov 2016 14:29:01 +0000 (15:29 +0100)]
gnu: cross-base: Remove exports of cross compilers.

They were never really needed and caused troubles in the presence of
circular module dependencies as reported by
Danny Milosavljevic <dannym@scratchpost.org> at
<https://lists.gnu.org/archive/html/guix-devel/2016-11/msg00144.html>.

* gnu/packages/cross-base.scm (xgcc-mips64el, xgcc-xtensa, xgcc-armhf):
Remove.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[native-inputs]: Use
'cross-gcc' instead of XGCC-XTENSA.

7 years agognu: Remove '%final-inputs' references at the top level.
Ludovic Courtès [Fri, 4 Nov 2016 14:16:11 +0000 (15:16 +0100)]
gnu: Remove '%final-inputs' references at the top level.

Due to circular dependencies, referring to bindings exported by other
modules from the top level is frowned upon.  This patch addresses one of
the remaining cases.

* gnu/packages/base.scm (%final-inputs): New procedure.
* gnu/packages/cross-base.scm: Remove (gnu packages commencement) import.
(cross-gcc): Use the new '%final-inputs'.
* gnu/packages/make-bootstrap.scm: Remove (gnu packages commencement) import.
(package-with-relocatable-glibc): Use the new '%final-inputs'.

7 years agognu: r-nmf: Use bigmemory.
Roel Janssen [Fri, 4 Nov 2016 13:53:24 +0000 (14:53 +0100)]
gnu: r-nmf: Use bigmemory.

* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add
r-bigmemory and r-synchronicity.

7 years agognu: Add r-bigmemory.
Roel Janssen [Fri, 4 Nov 2016 13:46:47 +0000 (14:46 +0100)]
gnu: Add r-bigmemory.

* gnu/packages/statistics.scm (r-bigmemory): New variable.

7 years agognu: Add r-synchronicity.
Roel Janssen [Fri, 4 Nov 2016 13:40:13 +0000 (14:40 +0100)]
gnu: Add r-synchronicity.

* gnu/packages/statistics.scm (r-synchronicity): New variable.

7 years agognu: Add r-bigmemory-sri.
Roel Janssen [Fri, 4 Nov 2016 13:35:04 +0000 (14:35 +0100)]
gnu: Add r-bigmemory-sri.

gnu/packages/statistics.scm (r-bigmemory-sri): New variable.

7 years agognu: xmp: Update to 4.1.0.
宋文武 [Fri, 4 Nov 2016 12:21:21 +0000 (20:21 +0800)]
gnu: xmp: Update to 4.1.0.

* gnu/packages/audio.scm (xmp): Update to 4.1.0.

7 years agognu: libxmp: Update to 4.4.1.
宋文武 [Fri, 4 Nov 2016 12:20:54 +0000 (20:20 +0800)]
gnu: libxmp: Update to 4.4.1.

* gnu/packages/audio.scm (libxmp): Update to 4.4.1.

7 years agognu: Add swh-plugins-lv2.
Florian Paul Schmidt [Thu, 10 Dec 2015 14:13:36 +0000 (15:13 +0100)]
gnu: Add swh-plugins-lv2.

* gnu/packages/audio.scm (swh-plugins-lv2): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
7 years agognu: Add python-bleach.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:38 +0000 (13:20 +0100)]
gnu: Add python-bleach.

* gnu/packages/python.scm (python-bleach, python2-bleach): New
variables.

7 years agognu: Add python-nbformat.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:37 +0000 (13:20 +0100)]
gnu: Add python-nbformat.

* gnu/packages/python.scm (python-nbformat, python2-nbformat): New
variables.

7 years agognu: Add python-html5lib-0.9.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:36 +0000 (13:20 +0100)]
gnu: Add python-html5lib-0.9.

* gnu/packages/python.scm (python-html5lib-0.9, python2-html5lib-0.9):
New variables.

7 years agognu: Add python-testpath.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:35 +0000 (13:20 +0100)]
gnu: Add python-testpath.

* gnu/packages/python.scm (python-testpath, python2-testpath): New
variables.

7 years agognu: Add python-ipykernel.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:34 +0000 (13:20 +0100)]
gnu: Add python-ipykernel.

* gnu/packages/python.scm (python-ipykernel, python2-ipykernel): New
variables.

7 years agognu: Add python-jupyter-client.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:33 +0000 (13:20 +0100)]
gnu: Add python-jupyter-client.

* gnu/packages/python.scm (python-jupyter-client,
python2-jupyter-client): New variables.

7 years agognu: Add python-jupyter-core.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:32 +0000 (13:20 +0100)]
gnu: Add python-jupyter-core.

* gnu/packages/python.scm (python-jupyter-core, python2-jupyter-core):
New variables.

7 years agognu: python-traitlets: Update to 4.2.0.
Ricardo Wurmus [Tue, 1 Nov 2016 12:20:31 +0000 (13:20 +0100)]
gnu: python-traitlets: Update to 4.2.0.

* gnu/packages/python.scm (python-traitlets): Update to 4.2.0.

7 years agognu: Add font-adobe-source-code-pro.
Marius Bakke [Sun, 9 Oct 2016 21:26:12 +0000 (22:26 +0100)]
gnu: Add font-adobe-source-code-pro.

* gnu/packages/fonts.scm (font-adobe-source-code-pro): New variable.

7 years agognu: Add geteltorito.
Marius Bakke [Tue, 1 Nov 2016 13:46:44 +0000 (13:46 +0000)]
gnu: Add geteltorito.

* gnu/packages/cdrom.scm (geteltorito): New variable.

7 years agognu: maxima: Update to 5.38.1.
Kei Kebreau [Thu, 3 Nov 2016 20:14:05 +0000 (16:14 -0400)]
gnu: maxima: Update to 5.38.1.

* gnu/packages/maths.scm (maxima): Update to 5.38.1.

7 years agognu: starfighter: Update to 1.6.
Kei Kebreau [Thu, 3 Nov 2016 19:40:17 +0000 (15:40 -0400)]
gnu: starfighter: Update to 1.6.

* gnu/packages/games.scm (starfighter): Update to 1.6.

7 years agognu: r-rcas: Update to 1.0.0.
Ricardo Wurmus [Thu, 3 Nov 2016 17:30:43 +0000 (18:30 +0100)]
gnu: r-rcas: Update to 1.0.0.

* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.0.0.

7 years agognu: r-rtracklayer: Update to 1.34.1.
Ricardo Wurmus [Thu, 3 Nov 2016 16:49:46 +0000 (17:49 +0100)]
gnu: r-rtracklayer: Update to 1.34.1.

* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.1.

7 years agognu: r-biocparallel: Update to 1.8.1.
Ricardo Wurmus [Thu, 3 Nov 2016 16:49:15 +0000 (17:49 +0100)]
gnu: r-biocparallel: Update to 1.8.1.

* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.1.

7 years agognu: r-limma: Update to 3.30.2.
Ricardo Wurmus [Thu, 3 Nov 2016 16:48:46 +0000 (17:48 +0100)]
gnu: r-limma: Update to 3.30.2.

* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.2.

7 years agognu: r-edger: Update to 3.16.1.
Ricardo Wurmus [Thu, 3 Nov 2016 16:48:22 +0000 (17:48 +0100)]
gnu: r-edger: Update to 3.16.1.

* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.1.

7 years agognu: r-hmisc: Update to 4.0.0.
Ricardo Wurmus [Thu, 3 Nov 2016 16:47:26 +0000 (17:47 +0100)]
gnu: r-hmisc: Update to 4.0.0.

* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0.
[propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis,
r-survival.

7 years agognu: r-r-oo: Update to 1.21.0.
Ricardo Wurmus [Thu, 3 Nov 2016 16:47:01 +0000 (17:47 +0100)]
gnu: r-r-oo: Update to 1.21.0.

* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.

7 years agognu: r-openssl: Update to 0.9.5.
Ricardo Wurmus [Thu, 3 Nov 2016 16:46:39 +0000 (17:46 +0100)]
gnu: r-openssl: Update to 0.9.5.

* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.

7 years agognu: r-checkmate: Update to 1.8.2.
Ricardo Wurmus [Thu, 3 Nov 2016 16:46:17 +0000 (17:46 +0100)]
gnu: r-checkmate: Update to 1.8.2.

* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.

7 years agognu: r-acepack: Update to 1.4.1.
Ricardo Wurmus [Thu, 3 Nov 2016 16:45:57 +0000 (17:45 +0100)]
gnu: r-acepack: Update to 1.4.1.

* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.

7 years agognu: r-gdtools: Update to 0.1.1.
Ricardo Wurmus [Thu, 3 Nov 2016 16:44:31 +0000 (17:44 +0100)]
gnu: r-gdtools: Update to 0.1.1.

* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1.
[propagated-inputs]: Add r-withr.

7 years agognu: r-proto: Update to 1.0.0.
Ricardo Wurmus [Thu, 3 Nov 2016 16:44:10 +0000 (17:44 +0100)]
gnu: r-proto: Update to 1.0.0.

* gnu/packages/statistics.scm (r-proto): Update to 1.0.0.

7 years agognu: Add r-survival.
Ricardo Wurmus [Thu, 3 Nov 2016 17:57:21 +0000 (18:57 +0100)]
gnu: Add r-survival.

* gnu/packages/statistics.scm (r-survival): New variable.

7 years agognu: Add r-htmltable.
Ricardo Wurmus [Thu, 3 Nov 2016 16:43:47 +0000 (17:43 +0100)]
gnu: Add r-htmltable.

* gnu/packages/web.scm (r-htmltable): New variable.

7 years ago[PATCH] gnu: Add libjxr.
Kei Kebreau [Thu, 3 Nov 2016 17:36:02 +0000 (13:36 -0400)]
[PATCH] gnu: Add libjxr.

* gnu/packages/image.scm (libjxr): New variable.
* gnu/packages/patches/libjxr-fix-function-signature.patch: New file.
* gnu/packages/patches/libjxr-fix-typos.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patches.

7 years agoimport: cran: Fix off-by-one error.
Ricardo Wurmus [Thu, 3 Nov 2016 15:03:28 +0000 (16:03 +0100)]
import: cran: Fix off-by-one error.

* guix/import/cran.scm (package->upstream-name): Do not include leading
slash in upstream name URL.

7 years agognu: sunxi-tools: Update to 1.4.1.
Danny Milosavljevic [Wed, 2 Nov 2016 23:58:56 +0000 (00:58 +0100)]
gnu: sunxi-tools: Update to 1.4.1.

* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.1.
[arguments]: Add "CC=gcc" "all" to #:make-flags.  Remove 'fix-Makefile'
phase.  Add 'install' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
7 years agotests: 'make check-system' prints the "build trace".
Ludovic Courtès [Thu, 3 Nov 2016 14:44:49 +0000 (15:44 +0100)]
tests: 'make check-system' prints the "build trace".

* build-aux/run-system-tests.scm (run-system-tests): Pass
  #:print-build-trace to 'set-build-options*'.

7 years agognu: Add pdf2svg.
Arun Isaac [Sun, 30 Oct 2016 11:07:28 +0000 (16:37 +0530)]
gnu: Add pdf2svg.

* gnu/packages/pdf.scm (pdf2svg): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
7 years agognu: gnurl: Update to 7.51.0 [fixes CVE-2016-{8615..8625}].
ng0 [Wed, 2 Nov 2016 20:13:46 +0000 (20:13 +0000)]
gnu: gnurl: Update to 7.51.0 [fixes CVE-2016-{8615..8625}].

* gnu/packages/gnunet.scm (gnurl): Update to 7.51.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
7 years agognu: Add perl-getopt-long.
Alex Sassmannshausen [Wed, 2 Nov 2016 12:55:02 +0000 (13:55 +0100)]
gnu: Add perl-getopt-long.

* gnu/packages/perl.scm (perl-getopt-long): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
7 years agognu: curl: Update replacement to 7.51.0 [fixes CVE-2016-{8615..8625}].
Marius Bakke [Wed, 2 Nov 2016 09:01:36 +0000 (09:01 +0000)]
gnu: curl: Update replacement to 7.51.0 [fixes CVE-2016-{8615..8625}].

* gnu/packages/curl.scm (curl)[replacement]: Update to 7.51.0.
(curl-7.50.3): Replace with ...
(curl-7.51.0): ... this.

7 years agognu: linux-libre: Update to 4.8.6.
Mark H Weaver [Wed, 2 Nov 2016 11:31:53 +0000 (07:31 -0400)]
gnu: linux-libre: Update to 4.8.6.

* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.6.

7 years agognu: linux-libre@4.4: Update to 4.4.30.
Mark H Weaver [Wed, 2 Nov 2016 11:29:28 +0000 (07:29 -0400)]
gnu: linux-libre@4.4: Update to 4.4.30.

* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.30.

7 years agognu: perl-test-simple: Update to 1.302062.
Ricardo Wurmus [Wed, 2 Nov 2016 10:51:46 +0000 (11:51 +0100)]
gnu: perl-test-simple: Update to 1.302062.

* gnu/packages/perl.scm (perl-test-simple): Update to 1.302062.

7 years agognu: re2: Update to 2016-11-01.
Marius Bakke [Wed, 2 Nov 2016 04:41:52 +0000 (04:41 +0000)]
gnu: re2: Update to 2016-11-01.

* gnu/packages/regex.scm (re2): Update to 2016-11-01.

7 years agognu: isc-dhcp: Update to 4.3.5 [fixes CVE-2016-8864].
Leo Famulari [Wed, 2 Nov 2016 01:31:13 +0000 (21:31 -0400)]
gnu: isc-dhcp: Update to 4.3.5 [fixes CVE-2016-8864].

* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.5. Update bundled
'bind' to 9.9.9-P4.

7 years agognu: iproute2: Update to 4.8.0.
Leo Famulari [Wed, 2 Nov 2016 01:30:56 +0000 (21:30 -0400)]
gnu: iproute2: Update to 4.8.0.

* gnu/packages/linux.scm (iproute2): Update to 4.8.0.
[arguments]: Set Bash completion directory in #:make-flags.

7 years agognu: love: Update to 0.10.2.
David Thompson [Wed, 2 Nov 2016 01:02:09 +0000 (21:02 -0400)]
gnu: love: Update to 0.10.2.

* gnu/packages/game-development.scm (love): Update to 0.10.2.

7 years agodoc: Fix typo.
Ludovic Courtès [Tue, 1 Nov 2016 21:09:36 +0000 (22:09 +0100)]
doc: Fix typo.

Fixes <http://bugs.gnu.org/24851>.
Reported by saffronsnail@hushmail.com.

* doc/guix.texi (Initial RAM Disk): Move parenthesis to after "of
QEMU".

7 years agognu: emacs-debbugs: Update to 0.12.
Ludovic Courtès [Tue, 1 Nov 2016 20:50:42 +0000 (21:50 +0100)]
gnu: emacs-debbugs: Update to 0.12.

* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.12.

7 years agognu: bind: Update to 9.10.4-P4 [fixes CVE-2016-8864].
Leo Famulari [Tue, 1 Nov 2016 21:00:23 +0000 (17:00 -0400)]
gnu: bind: Update to 9.10.4-P4 [fixes CVE-2016-8864].

* gnu/packages/dns.scm (bind): Update to 9.10.4-P4.

7 years agognu: diffoscope: Update to 62.
Leo Famulari [Tue, 1 Nov 2016 20:15:24 +0000 (16:15 -0400)]
gnu: diffoscope: Update to 62.

* gnu/packages/package-management.scm (diffoscope): Update to 62.

7 years agognu: python-django: Update to 1.10.3 [fixes CVE-2016-{9013,9014}].
Marius Bakke [Tue, 1 Nov 2016 15:32:06 +0000 (15:32 +0000)]
gnu: python-django: Update to 1.10.3 [fixes CVE-2016-{9013,9014}].

* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.3.
[source]: Remove patch.
* gnu/packages/patches/python-django-fix-testcase.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

7 years agognu: xapian: Update to 1.4.1.
Marius Bakke [Tue, 1 Nov 2016 10:37:19 +0000 (10:37 +0000)]
gnu: xapian: Update to 1.4.1.

* gnu/packages/search.scm (xapian): Update to 1.4.1.

7 years agognu: Correct hackage mirror usage.
Efraim Flashner [Tue, 1 Nov 2016 08:31:24 +0000 (10:31 +0200)]
gnu: Correct hackage mirror usage.

* gnu/package/haskell.scm (ghc-data-accessor)[source]: Specify hackage
mirror.
(ghc-data-accessor-transformers)[source]: Same.
(ghc-gnuplot)[source]: Same.

7 years agoguix: Update hackage mirror.
Efraim Flashner [Tue, 1 Nov 2016 08:28:24 +0000 (10:28 +0200)]
guix: Update hackage mirror.

* guix/download.scm (%mirrors)[hackage]: Don't use https.