Tobias Geerinckx-Rice [Wed, 6 Jun 2018 01:30:14 +0000 (03:30 +0200)]
gnu: inxi: Fix up synopsis & description.
* gnu/packages/admin.scm (inxi)[synopsis]: Fix typo.
[description]: Use @code{}.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 04:22:28 +0000 (06:22 +0200)]
gnu: libngspice: Update to 28.
* gnu/packages/engineering.scm (libngspice): Update to 28.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 04:23:38 +0000 (06:23 +0200)]
gnu: libngspice: Use C-locale date format.
* gnu/packages/engineering.scm (libngspice): Use a more standard
(C-locale) date format when forging timestamps.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 04:44:35 +0000 (06:44 +0200)]
gnu: python-pyxdg: Return #t from phases.
* gnu/packages/freedesktop.scm (python-pyxdg)[arguments]: Substitute
INVOKE for SYSTEM*.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 05:06:46 +0000 (07:06 +0200)]
gnu: seabios: Return #t from all phases.
* gnu/packages/firmware.scm (seabios)[arguments]: Return #t from
the ‘install’ phase.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 14:49:17 +0000 (16:49 +0200)]
gnu: gnuastro: Add TIFF support.
This adds ~3.6 MiB (3.6%) to gnuastro's now-103.9 MiB closure.
* gnu/packages/astronomy.scm (gnuastro)[inputs]: Add libtiff and zlib.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 18:38:17 +0000 (20:38 +0200)]
gnu: xmlsec: Update to 1.2.26.
* gnu/packages/xml.scm (xmlsec): Update to 1.2.26.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 19:25:45 +0000 (21:25 +0200)]
gnu: xcalib: Update to 0.10.
* gnu/packages/xdisorg.scm (xcalib): Update to 0.10.
[home-page]: Switch to new upstream.
[source]: Use GIT-FETCH. Add xcalib-update-man-page.patch.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[arguments]: Remove the old build system's arguments.
[inputs]: Add libxrandr.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 19:56:53 +0000 (21:56 +0200)]
gnu: perl-net-http: Update to 6.18.
* gnu/packages/web.scm (perl-net-http): Update to 6.18.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 21:14:59 +0000 (23:14 +0200)]
gnu: perl-cgi: Update to 4.38.
* gnu/packages/web.scm (perl-cgi): Update to 4.38.
Danny Milosavljevic [Thu, 7 Jun 2018 19:38:37 +0000 (21:38 +0200)]
gnu: qucs: Patch bootstrapping scripts.
* gnu/packages/engineering.scm (qucs)[arguments]<#:phases>[patch-bootstrap]:
New phase.
Theodoros Foradis [Sat, 19 May 2018 18:46:27 +0000 (21:46 +0300)]
gnu: qucs-s: Update to 0.0.20.
* gnu/packages/engineering.scm (qucs-s): Update to 0.0.20.
[arguments]: Modify patch-paths phase to work with version 0.0.20.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
Theodoros Foradis [Sat, 19 May 2018 18:46:26 +0000 (21:46 +0300)]
gnu: lapack-3.5: Delete package.
* gnu/packages/maths.scm (lapack-3.5): Delete package.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
Theodoros Foradis [Sat, 19 May 2018 18:46:25 +0000 (21:46 +0300)]
gnu: xyce-serial: Update to 6.8.
* gnu/packages/engineering.scm (xyce-serial): Update to 6.8.
[inputs]: Replace lapack-3.5 with lapack.
* gnu/packages/engineering.scm (xyce-prallel):
[arguments]: Update configure flags to work with 6.8 version.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
Theodoros Foradis [Sat, 19 May 2018 18:46:24 +0000 (21:46 +0300)]
gnu: trilinos-serial-xyce: Update to 12.12.1.
* gnu/packages/engineering.scm (trilinos-serial-xyce): Update to 12.12.1.
[arguments]: Add delete-tribits phase.
[inputs]: Replace lapack-3.5 with lapack.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
Theodoros Foradis [Sat, 19 May 2018 18:46:23 +0000 (21:46 +0300)]
gnu: libngspice: Update to 27.
* gnu/packages/engineering.scm (libngspice): Update to 27.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
Theodoros Foradis [Thu, 7 Jun 2018 19:24:54 +0000 (21:24 +0200)]
gnu: qucs: Build from git to fix bug.
* gnu/packages/engineering.scm (qucs): Add TODO comment.
[source]: Use git commit
b4f27d9.
[native-inputs]: Add autoconf, automake, flex and bison.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
Ricardo Wurmus [Thu, 7 Jun 2018 18:33:10 +0000 (20:33 +0200)]
gnu: r-rcas: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.6.0.
[source]: Fetch from bioconductor.
[native-inputs]: Remove r-knitr.
[propagated-inputs]: Add r-biocgenerics, r-biostrings, r-cowplot, r-dbi,
r-ggseqlogo, r-knitr, r-pheatmap, r-proxy, r-rsqlite, and r-s4vectors.
Ricardo Wurmus [Thu, 7 Jun 2018 18:32:45 +0000 (20:32 +0200)]
gnu: Add r-ggseqlogo.
* gnu/packages/cran.scm (r-ggseqlogo): New variable.
Rutger Helling [Thu, 7 Jun 2018 11:32:28 +0000 (13:32 +0200)]
gnu: Add deprecated-package vulkan-icd-loader.
* gnu/packages/vulkan.scm (vulkan-icd-loader): New variable.
Efraim Flashner [Thu, 7 Jun 2018 09:18:32 +0000 (12:18 +0300)]
gnu: ovmf: Simplify build.
* gnu/packages/firmware.scm (ovmf)[arguments]: Change custom 'build-ia32
phase to replace 'build. Remove unneeded substitutions in 'configure,
'build and 'build-x64. Shorten 'build and 'build-x64 phases.
Ricardo Wurmus [Thu, 7 Jun 2018 08:47:35 +0000 (10:47 +0200)]
gnu: star: Update to 2.6.0c.
* gnu/packages/bioinformatics.scm (star): Update to 2.6.0c.
[source]: Fetch from git.
Ricardo Wurmus [Thu, 7 Jun 2018 08:45:38 +0000 (10:45 +0200)]
gnu: libreoffice: Update to 6.0.5.1.
* gnu/packages/patches/libreoffice-icu.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.0.5.1.
[source]: Add patch.
[inputs]: Add libepubgen and libqxp.
[arguments]: Adjust "prepare-src" phase.
Ricardo Wurmus [Thu, 7 Jun 2018 07:37:22 +0000 (09:37 +0200)]
gnu: orcus: Update to 0.13.4.
* gnu/packages/libreoffice.scm (orcus): Update to 0.13.4.
Ricardo Wurmus [Thu, 7 Jun 2018 07:37:03 +0000 (09:37 +0200)]
gnu: ixion: Update to 0.13.0.
* gnu/packages/libreoffice.scm (ixion): Update to 0.13.0.
Ricardo Wurmus [Thu, 7 Jun 2018 07:36:48 +0000 (09:36 +0200)]
gnu: Add libqxp.
* gnu/packages/libreoffice.scm (libqxp): New variable.
Ricardo Wurmus [Thu, 7 Jun 2018 06:30:41 +0000 (08:30 +0200)]
gnu: Add libepubgen.
* gnu/packages/libreoffice.scm (libepubgen): New variable.
Adam Zimmerman [Wed, 6 Jun 2018 21:47:46 +0000 (14:47 -0700)]
gnu: opensmtpd: Fix crash on table authentication.
* gnu/packages/patches/opensmtpd-fix-crash.patch: New patch.
* gnu/packages/mail.scm (opensmtpd)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 21:08:14 +0000 (23:08 +0200)]
gnu: jbig2dec: Update source and home page URIs.
The old downloads.ghostscript.com returns a bogus 200 response, while
the new home page lists a different source.
Reported by Gábor Boskovits <boskovits@gmail.com>.
* gnu/packages/image.scm (jbig2dec)[source, home-page]: Update URIs.
Nicolas Goaziou [Wed, 6 Jun 2018 22:22:09 +0000 (00:22 +0200)]
gnu: scribus: Fix build.
* gnu/packages/scribus.scm (scribus)[arguments]: Re-introduce fix for
"ImportError: No module named _sysconfigdata_nd".
Ricardo Wurmus [Wed, 6 Jun 2018 20:43:37 +0000 (22:43 +0200)]
Merge branch 'master' into core-updates
Nicolas Goaziou [Wed, 6 Jun 2018 17:16:21 +0000 (19:16 +0200)]
gnu: colobot: Update to 0.1.11.1-alpha.
* gnu/packages/games.scm (colobot): Update to 0.1.11.1-alpha.
[native-inputs]: Update "colobot-data" and "colobot-music" to 0.1.11.1-alpha.
Nicolas Goaziou [Wed, 6 Jun 2018 16:34:45 +0000 (18:34 +0200)]
gnu: scribus: Add "libzmf" dependency
* gnu/packages/scribus.scm (scribus)[inputs]: Add "libzmf".
Nicolas Goaziou [Wed, 6 Jun 2018 16:33:38 +0000 (18:33 +0200)]
gnu: scribus: Update to 1.5.4.
* gnu/packages/scribus.scm (scribus): Update to 1.5.4.
[source]: Remove patches.
[arguments]: Remove `patch-source' phase.
Rutger Helling [Wed, 6 Jun 2018 07:59:15 +0000 (09:59 +0200)]
gnu: vulkan-loader: Update URL and change name.
* gnu/packages/emulators.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
* gnu/packages/games.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
* gnu/packages/video.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
* gnu/packages/vulkan.scm (vulkan-loader): Rename from 'vulkan-icd-loader' to
'vulkan-loader'. Update URL and hash.
* gnu/packages/wine.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
Rutger Helling [Wed, 6 Jun 2018 12:35:11 +0000 (14:35 +0200)]
gnu: you-get: Update to 0.4.1077.
* gnu/packages/video.scm (you-get): Update to 0.4.1077.
Rutger Helling [Wed, 6 Jun 2018 12:33:52 +0000 (14:33 +0200)]
gnu: diffoscope: Update to 95.
* gnu/packages/package-management.scm (diffoscope): Update to 95.
Rutger Helling [Wed, 6 Jun 2018 12:32:17 +0000 (14:32 +0200)]
gnu: epiphany: Update to 3.28.2.1.
* gnu/packages/gnome.scm (epiphany): Update to 3.28.2.1.
Rutger Helling [Wed, 6 Jun 2018 12:30:38 +0000 (14:30 +0200)]
gnu: gnome-disk-utility: Update to 3.28.3.
* gnu/packages/gnome.scm (gnome-disk-utility): Update to 3.28.3.
Rutger Helling [Wed, 6 Jun 2018 12:29:44 +0000 (14:29 +0200)]
gnu: gnome-terminal: Update to 3.28.2.
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.28.2.
Rutger Helling [Wed, 6 Jun 2018 12:28:52 +0000 (14:28 +0200)]
gnu: gedit: Update to 3.28.1.
* gnu/packages/gnome.scm (gedit): Update to 3.28.1.
Ludovic Courtès [Wed, 6 Jun 2018 12:26:09 +0000 (14:26 +0200)]
tests: Adjust 'guix package' test to "python2" name.
This is a followup to
a7714d42de2c3082f3609d1e63c83d703fb39cf9, which
renamed Python 2.x to "python2".
* tests/guix-package.sh: Use g-wrap and guile@2.0 when testing
collisions.
Ludovic Courtès [Wed, 6 Jun 2018 11:58:43 +0000 (13:58 +0200)]
tests: Adjust graph test.
This is a followup to
301a4249064227bc4883e4e5b638e85a65925ba0, which
added a dependency to sed.
* tests/graph.scm ("node-edges"): Use 'hello', not 'sed', as the example
of a package without any dependency.
Ricardo Wurmus [Wed, 6 Jun 2018 11:14:23 +0000 (13:14 +0200)]
gnu: vigra: Disable broken test.
* gnu/packages/image.scm (vigra)[arguments]: Add phase "disable-broken-test";
enable parallel build.
Rutger Helling [Wed, 6 Jun 2018 10:45:12 +0000 (12:45 +0200)]
gnu: lynx: Update to 2.8.9dev.19.
* gnu/packages/web-browsers.scm (lynx): Update to 2.8.9dev.19.
Efraim Flashner [Wed, 6 Jun 2018 10:04:35 +0000 (13:04 +0300)]
gnu: esmtp: Replace 'bootstrap phase.
* gnu/packages/mail.scm (esmtp)[arguments]: Use custom 'autoconf phase
to replace default 'bootstrap phase.
Efraim Flashner [Wed, 6 Jun 2018 09:59:36 +0000 (12:59 +0300)]
gnu: can-utils: Remove 'bootstrap phase.
* gnu/packages/networking.scm (can-utils)[arguments]: Remove unnecessary
'bootstrap phase.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 03:28:24 +0000 (05:28 +0200)]
gnu: gerbv: Update to 2.6.2.
* gnu/packages/engineering.scm (gerbv): Update to 2.6.2.
[arguments]: Remove ‘autoconf’ phase...
[native-inputs]: ...and remove its dependencies.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 03:17:12 +0000 (05:17 +0200)]
gnu: linsmith: Update to 0.99.31.
* gnu/packages/engineering.scm (linsmith): Update to 0.99.31.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 03:17:02 +0000 (05:17 +0200)]
gnu: linsmith: Use HTTPS home page.
* gnu/packages/engineering.scm (linsmith)[home-page]: Use HTTPS.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 03:05:39 +0000 (05:05 +0200)]
gnu: python-lmdb: Update to 0.94.
* gnu/packages/databases.scm (python-lmdb): Update to 0.94.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 03:00:42 +0000 (05:00 +0200)]
gnu: debootstrap: Update to 1.0.101.
* gnu/packages/debian.scm (debootstrap): Update to 1.0.101.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 02:43:46 +0000 (04:43 +0200)]
gnu: tomb: Update to 2.5.
* gnu/packages/crypto.scm (tomb): Update to 2.5.
[inputs, arguments]: Add util-linux for ‘findmnt’.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 02:32:50 +0000 (04:32 +0200)]
gnu: cfitsio: Update to 3.450.
* gnu/packages/astronomy.scm (cfitsio): Update to 3.450.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 02:03:29 +0000 (04:03 +0200)]
gnu: gnuastro: Update to 0.6.
* gnu/packages/astronomy.scm (gnuastro): Update to 0.6.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 02:02:15 +0000 (04:02 +0200)]
gnu: wcslib: Fix build.
* gnu/packages/astronomy.scm (wcslib)[arguments]: Skip the default
‘install-license-files’ phase. Don't build or test in parallel.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 01:22:34 +0000 (03:22 +0200)]
gnu: inxi: Update to 3.0.11-1.
* gnu/packages/admin.scm (inxi): Update to 3.0.11-1.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 01:20:08 +0000 (03:20 +0200)]
gnu: inxi: Use GIT-FETCH.
* gnu/packages/admin.scm (inxi)[source]: Use GIT-FETCH.
[native-inputs]: Remove tar.
[arguments]: Adjust accordingly.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 01:18:02 +0000 (03:18 +0200)]
gnu: inxi: Fix man page location.
* gnu/packages/admin.scm (inxi)[arguments]: Install man page to
/share/man instead of /share/doc/man.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 00:53:50 +0000 (02:53 +0200)]
gnu: ruby-asciidoctor: Use HTTPS home page.
* gnu/packages/ruby.scm (ruby-asciidoctor)[home-page]: Use HTTPS.
Tobias Geerinckx-Rice [Wed, 6 Jun 2018 00:53:01 +0000 (02:53 +0200)]
gnu: ruby-asciidoctor: Update to 1.5.7.1.
* gnu/packages/ruby.scm (ruby-asciidoctor): Update to 1.5.7.1.
Tobias Geerinckx-Rice [Tue, 5 Jun 2018 23:47:31 +0000 (01:47 +0200)]
gnu: ruby-eventmachine: Use working home page.
* gnu/packages/ruby.scm (ruby-eventmachine)[home-page]: Update URI.
Tobias Geerinckx-Rice [Tue, 5 Jun 2018 23:46:54 +0000 (01:46 +0200)]
gnu: ruby-eventmachine: Update to 1.2.7.
* gnu/packages/ruby.scm (ruby-eventmachine): Update to 1.2.7.
Tobias Geerinckx-Rice [Tue, 5 Jun 2018 23:46:36 +0000 (01:46 +0200)]
gnu: ruby-connection-pool: Update to 2.2.2.
* gnu/packages/ruby.scm (ruby-connection-pool): Update to 2.2.2.
Tobias Geerinckx-Rice [Tue, 5 Jun 2018 23:13:56 +0000 (01:13 +0200)]
gnu: linkchecker: Update to 9.4.0.
* gnu/packages/web.scm (linkchecker): Update to 9.4.0.
[source]: Use GIT-FETCH.
[inputs]: Add python2-dnspython and python2-pyxdg.
[arguments]: Remove ‘remove-python-requests-version’ phase.
[license]: Remove licences of unbundled inputs.
Tobias Geerinckx-Rice [Tue, 5 Jun 2018 22:29:20 +0000 (00:29 +0200)]
gnu: xf86-input-wacom: Update to 0.36.1.
* gnu/packages/xdisorg.scm (xf86-input-wacom): Update to 0.36.1.
[source]: Update URI.
Tobias Geerinckx-Rice [Tue, 5 Jun 2018 22:28:43 +0000 (00:28 +0200)]
gnu: libwacom: Update to 0.30.
* gnu/packages/xdisorg.scm (libwacom): Update to 0.30.
[source]: Update URI.
Tobias Geerinckx-Rice [Tue, 5 Jun 2018 22:26:35 +0000 (00:26 +0200)]
gnu: libwacom, xf86-input-wacom: Update home page.
‘The Linux Wacom Project has moved.’
-- <http://linuxwacom.sourceforge.net/wiki>
* gnu/packages/xdisorg.scm (libwacom, xf86-input-wacom)[home-page]:
Update URI.
Leo Famulari [Wed, 6 Jun 2018 04:05:28 +0000 (00:05 -0400)]
gnu: darktable: Update to 2.4.4.
* gnu/packages/photo.scm (darktable): Update to 2.4.4.
Leo Famulari [Sat, 12 May 2018 20:47:28 +0000 (16:47 -0400)]
gnu: Update Syncthing to 0.14.48.
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.48.
Leo Famulari [Sat, 12 May 2018 20:44:01 +0000 (16:44 -0400)]
gnu: go-github-com-chmduquesne-rollinghash-adler32: Update to 0.0.0-2.
abb8cba.
* gnu/packages/syncthing.scm (go-github-com-chmduquesne-rollinghash-adler32):
Update to 0.0.0-2.
abb8cba.
Ricardo Wurmus [Tue, 5 Jun 2018 21:44:11 +0000 (23:44 +0200)]
Merge branch 'master' into core-updates
Ricardo Wurmus [Tue, 5 Jun 2018 21:20:42 +0000 (23:20 +0200)]
gnu: qtractor: Update to 0.9.1.
* gnu/packages/music.scm (qtractor): Update to 0.9.1.
[arguments]: Add phase "fix-build-with-qt-5.11".
Mark H Weaver [Mon, 4 Jun 2018 03:32:15 +0000 (23:32 -0400)]
gnu: linux-libre: Update to 4.17.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.
(%linux-libre-hash): Update hash.
* gnu/packages/aux-files/linux-libre/4.16-arm.conf,
gnu/packages/aux-files/linux-libre/4.16-arm64.conf,
gnu/packages/aux-files/linux-libre/4.16-i686.conf,
gnu/packages/aux-files/linux-libre/4.16-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/4.17-arm.conf,
gnu/packages/aux-files/linux-libre/4.17-arm64.conf,
gnu/packages/aux-files/linux-libre/4.17-i686.conf,
gnu/packages/aux-files/linux-libre/4.17-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
Mark H Weaver [Tue, 5 Jun 2018 21:18:18 +0000 (17:18 -0400)]
gnu: linux-libre@4.14: Update to 4.14.48.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.48.
(%linux-libre-4.14-hash): Update hash.
Mark H Weaver [Tue, 5 Jun 2018 21:16:52 +0000 (17:16 -0400)]
gnu: linux-libre@4.9: Update to 4.9.106.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.106.
Ricardo Wurmus [Tue, 5 Jun 2018 21:18:10 +0000 (23:18 +0200)]
gnu: yoshimi: Update to 1.5.8.
* gnu/packages/music.scm (yoshimi): Update to 1.5.8.
Efraim Flashner [Tue, 5 Jun 2018 19:53:08 +0000 (22:53 +0300)]
gnu: freedoom: Fix compilation.
* gnu/packages/games.scm (freedoom)[arguments]: Remove 'bootstrap phase.
Efraim Flashner [Tue, 5 Jun 2018 19:47:22 +0000 (22:47 +0300)]
gnu: arc-theme: Replace bootstrap phase.
* gnu/packages/gmome.scm (arc-theme)[arguments]: Replace 'boostrap phase
with a custom phase.
Efraim Flashner [Tue, 5 Jun 2018 19:09:55 +0000 (22:09 +0300)]
gnu: tilda: Replace bootstrap phase.
* gnu/packages/terminals.scm (tilda)[arguments]: Remove custom
'bootstrap phase and use it to replace default bootstrap phase.
Ricardo Wurmus [Tue, 5 Jun 2018 13:42:23 +0000 (15:42 +0200)]
gnu: Add sjcount.
* gnu/packages/bioinformatics.scm (sjcount): New variable.
宋文武 [Sat, 2 Jun 2018 15:23:45 +0000 (23:23 +0800)]
services: Add dnsmasq-service-type.
* gnu/services/dns.scm (dnsmasq-service-type): New variable.
(<dnsmasq-configuration>): New record type.
(dnsmasq-shepherd-service): New procedure.
* doc/guix.texi (DNS Services): Document it.
Ricardo Wurmus [Tue, 5 Jun 2018 11:59:15 +0000 (13:59 +0200)]
gnu: Remove duplicate definition of r-heatmaply.
* gnu/packages/cran.scm (r-heatmaply): Remove duplicate.
Ricardo Wurmus [Tue, 5 Jun 2018 11:59:15 +0000 (13:59 +0200)]
gnu: Remove duplicate definition of r-heatmaply.
* gnu/packages/cran.scm (r-heatmaply): Remove duplicate.
Ricardo Wurmus [Tue, 5 Jun 2018 11:50:29 +0000 (13:50 +0200)]
gnu: r-heatmaply: Add r-knitr.
* gnu/packages/cran.scm (r-heatmaply)[propagated-inputs]: Add r-knitr.
Ricardo Wurmus [Tue, 5 Jun 2018 11:50:29 +0000 (13:50 +0200)]
gnu: r-heatmaply: Add r-knitr.
* gnu/packages/cran.scm (r-heatmaply)[propagated-inputs]: Add r-knitr.
Ricardo Wurmus [Tue, 5 Jun 2018 11:12:13 +0000 (13:12 +0200)]
gnu: dropseq-tools: Remove failing phase.
* gnu/packages/bioinformatics.scm (dropseq-tools)[arguments]: Delete
"generate-jar-indices" phase.
Ricardo Wurmus [Tue, 5 Jun 2018 10:49:41 +0000 (12:49 +0200)]
gnu: java-bouncycastle: Disable tests.
* gnu/packages/java.scm (java-bouncycastle)[arguments]: Disable tests.
Ricardo Wurmus [Tue, 5 Jun 2018 09:26:34 +0000 (11:26 +0200)]
gnu: pigx-scrnaseq: Use only one variant of Picard.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
"java-picard" with "java-picard-2.10.3".
Ricardo Wurmus [Tue, 5 Jun 2018 09:26:08 +0000 (11:26 +0200)]
gnu: java-picard: Delete failing build phase.
* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Delete
"generate-jar-indices" phase.
Ricardo Wurmus [Tue, 5 Jun 2018 09:17:03 +0000 (11:17 +0200)]
gnu: java-cisd-jhdf5: Delete failing build phase.
* gnu/packages/java.scm (java-cisd-jhdf5)[arguments]: Delete build phase
"generate-jar-indices".
Ricardo Wurmus [Tue, 5 Jun 2018 09:15:21 +0000 (11:15 +0200)]
gnu: java-picard-1.113: Delete failing build phase.
* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Delete
"generate-jar-indices" build phase.
Ricardo Wurmus [Tue, 5 Jun 2018 09:14:38 +0000 (11:14 +0200)]
gnu: java-picard-2.10.3: Delete failing build phase.
* gnu/packages/bioinformatics.scm (java-picard-2.10.3)[arguments]: Delete
generate-jar-indices phase.
Ricardo Wurmus [Tue, 5 Jun 2018 09:09:39 +0000 (11:09 +0200)]
Merge branch 'master' into core-updates
Ricardo Wurmus [Tue, 5 Jun 2018 08:39:36 +0000 (10:39 +0200)]
gnu: r-rtracklayer: Update to 1.40.3.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.3.
Ricardo Wurmus [Tue, 5 Jun 2018 08:35:06 +0000 (10:35 +0200)]
gnu: r-ranger: Update to 0.10.1.
* gnu/packages/statistics.scm (r-ranger): Update to 0.10.1.
Ricardo Wurmus [Tue, 5 Jun 2018 08:34:52 +0000 (10:34 +0200)]
gnu: r-np: Update to 0.60-8.
* gnu/packages/cran.scm (r-np): Update to 0.60-8.
Ricardo Wurmus [Tue, 5 Jun 2018 08:34:38 +0000 (10:34 +0200)]
gnu: t-series: Update to 0.10-45.
* gnu/packages/cran.scm (t-series): Update to 0.10-45.
Ricardo Wurmus [Tue, 5 Jun 2018 08:34:26 +0000 (10:34 +0200)]
gnu: r-ksamples: Update to 1.2-8.
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-8.
Ricardo Wurmus [Tue, 5 Jun 2018 08:34:11 +0000 (10:34 +0200)]
gnu: r-methylkit: Update to 1.6.1.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.1.
HCoop / jackhill / guix / guix.git / log