image: Add rock64 support.

* gnu/system/images/rock64.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.

gnu: ungoogled-chromium: Update default preferences.

* gnu/packages/aux-files/chromium/master-preferences.json: Adjust for upstream
changes.

gnu: ungoogled-chromium: Update to 88.0.4324.182-0.b98f2d5.

* gnu/packages/chromium.scm (%chromium-version): Set to -88.0.4324.182.
(%ungoogled-revision): Set to 27c9e9fabd38001b32d148f7b3f99b4d31e67277.
(%ungoogled-origin, ungoogled-chromium): Update hashes.

gnu: emacs-helm-pass: Update to 0.4.

* gnu/packages/emacs-xyz.scm (emacs-helm-pass): Update to 0.4.

gnu: ir: Remove whitespace at end of line.

* gnu/packages/audio.scm (ir): Remove whitespace at end of line.

Signed-off-by: Léo Le Bouter <lle-bout@zaclys.net>

gnu: ruby-rack-protection: Update to 2.0.8.1.

* gnu/packages/ruby.scm (ruby-rack-protection): Update to 2.0.8.1.

gnu: exiv2-0.26: Remove variable.

* gnu/packages/image.scm (exiv2-0.26): Remove variable.
* gnu/packages/patches/exiv2-CVE-2017-14859-14862-14864.patch:
* gnu/packages/patches/exiv2-CVE-2017-14860.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Apply removal.

gnu: hugin: Update to 2020.0.0.

* gnu/packages/photo.scm (hugin): Update to 2020.0.0.
[inputs]: Use current exiv2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: Add cli11.

* gnu/packages/cpp.scm (cli11): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: screen: Patch CVE-2021-26937.

* gnu/packages/screen.scm (screen)[source]: Add patch.
* gnu/packages/patches/screen-CVE-2021-26937.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

gnu: sbcl-utm-ups: Update to 1.1-0.ffcb7b6.

* gnu/packages/lisp-xyz.scm (sbcl-utm-ups): Update to 1.1-0.ffcb7b6.

gnu: asymptote: Update to 2.69.

* gnu/packages/plotutils.scm (asymptote): Update to 2.69.

gnu: Add ghc-nixfmt.

* gnu/packages/haskell-xyz.scm (ghc-nixfmt): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: Add vmtouch.

* gnu/packages/admin.scm (vmtouch): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: fontmanager: Update to 0.8.4.

* gnu/packages/fontutils.scm (fontmanager): Update to 0.8.3.
[inputs]: Add libsoup and webkitgtk.
[native-inputs]: Remove vala; add vala-0.50.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: herbstluftwm: Update to 0.9.2.

* gnu/packages/wm.scm (herbstluftwm): Update to 0.9.2.
[inputs]: Add libxft.
[native-inputs]: Add python.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: python-onnx: Update to 1.8.1.

* gnu/packages/machine-learning.scm (python-onnx): Update to 1.8.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: libredwg: Update to 0.12.1.

* gnu/packages/engineering.scm (libredwg): Update to 0.12.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: darktable: Update to 3.4.1.

* gnu/packages/photo.scm (darktable): Update to 3.4.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: setzer: Update to 0.4.1.

* gnu/packages/gnome.scm (setzer): Update to 0.4.1.
[inputs]: Add python-pdfminer-six.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: Add python-pdfminer-six.

* gnu/packages/python-xyz.scm (python-pdfminer-six): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: Add imgp.

* gnu/packages/image.scm (imgp): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: Add python-pillow-simd.

* gnu/packages/python-xyz.scm (python-pillow-simd): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: Add asdf (Advanced Scientific Data Format)

* gnu/packages/astronomy.scm (python-asdf): New variable

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: wcslib: Update to 7.4

* gnu/packages/astronomy.scm (wcslib): Update to 7.4

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: xfce4-cpugraph-plugin: Update to 1.2.2.

* gnu/packages/xfce.scm (xfce4-cpugraph-plugin): Update to 1.2.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: Add transcrypt.

* gnu/packages/crypto.scm (transcrypt): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: frrouting: Update to 7.5.

* gnu/packages/networking.scm (frrouting): Update to 7.5.
[inputs]: Add libcap and libyang.

Signed-off-by: Leo Famulari <leo@famulari.name>

gnu: Add libyang

* gnu/packages/networking.scm (libyang): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>

gnu: artyfx: Update to 1.3.1.

* gnu/packages/music.scm (artyfx): Update to 1.3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>

gnu: lrzip: Update to 0.640.

* gnu/packages/compression.scm (lrzip): Update to 0.640.
[source]: Remove obsolete patch 'lrzip-CVE-2017-8842.patch'.
[inputs]: Add lz4.
* gnu/packages/patches/lrzip-CVE-2017-8842.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>

gnu: lynis: Update to 3.0.3.

* gnu/packages/admin.scm (lynis): Update to 3.0.3.
[native-inputs]: Update lynis-sdk accordingly.

Signed-off-by: Leo Famulari <leo@famulari.name>

gnu: Add libretro-lowresnx.

* gnu/packages/emulators.scm (libretro-lowresnx): New variable.

doc: Fix typography.

* doc/guix.texi (Continuous Integration): Use @pxref appropriately.  Remove
`quote' from code examples.

gnu: emacs-oauth2: Update to 0.16.

* gnu/packages/emacs-xyz.scm (emacs-oauth2): Update to 0.16.

gnu: Python 3.9: Fix CVE-2021-3177.

* gnu/packages/patches/python-3.9-CVE-2021-3177.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.9)[source]: Use it.

gnu: nanopolish: Fix script wrapping.

* gnu/packages/bioinformatics.scm (nanopolish)[arguments]: Fix wrap-programs
phase.
[inputs]: Add Guile for wrap-script; add bioperl and perl-getopt-long for Perl
scripts.

gnu: python-scikit-learn: Update to 0.24.1.

* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.24.1.
[propagated-inputs]: Add python-threadpoolctl.
(python2-scikit-learn)[inputs,native-inputs,propagated-inputs]: Do not
inherit these fields.

gnu: Add prinseq.

* gnu/packages/bioinformatics.scm (prinseq): New variable.

gnu: Add perl-statistics-pca.

* gnu/packages/perl.scm (perl-statistics-pca): New variable.

gnu: Add perl-math-cephes.

* gnu/packages/perl-maths.scm (perl-math-cephes): New variable.

gnu: Add butt.

* gnu/packages/audio.scm (butt): New variable.

gnu: Add xoscope.

* gnu/packages/electronics.scm (xoscope): New variable.

gnu: Add comedilib.

* gnu/packages/electronics.scm (comedilib): New variable.

gnu: Add GtkDatabox.

* gnu/packages/gtk.scm (gtkdatabox): New variable.

services: cuirass: Add "simple-cuirass-services".

* gnu/services/cuirass.scm (<build-manifest>,
<simple-cuirass-configuration>): New records.
(build-manifest, build-manifest?, simple-cuirass-configuration,
simple-cuirass-configuration?, simple-cuirass-services): New procedures.
(%default-cuirass-config): New variable.
* gnu/tests/cuirass.scm (%cuirass-simple-test): New variable.
* doc/guix.texi (Continuous Integration): Document it.

tests: cuirass: Add an operating system argument.

Rewrite so that "run-cuirass-test" takes an operating-system argument. This is
functionally equivalent.

* gnu/tests/cuirass.scm (%derivation-file, git-service, cow-service,
%cuirass-specs): New variables.
(cuirass-services): New procedure.
(run-cuirass-test): Add an "operating-system" argument.
(%cuirass-test): Adapt it.
(%cuirass-remote-test): Ditto.

tests: Export %simple-os.

* gnu/tests.scm (%simple-os): Export it.

gnu: Add perl-contextual-return.

* gnu/packages/perl.scm (perl-contextual-return): New variable.

gnu: Add perl-want.

* gnu/packages/perl.scm (perl-want): New variable.

gnu: Add perl-math-matrixreal.

* gnu/packages/perl-maths.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

gnu: Add ngshmmalign.

* gnu/packages/bioinformatics.scm (ngshmmalign): New variable.

gnu: python-locust: Update to 1.4.3.

* gnu/packages/benchmark.scm (python-locust): Update to 1.4.3.
[phases]: Remove trailing #t.
{check}: Disable the 'test_html_report_option', 'test_custom_exit_code' and
'test_webserver' tests.

doc: Add an example of how the open file descriptors limit can be raised.

* doc/guix.texi (Base Services)[pam-limits-service]: Add an example and
explanation of how the 'nofile', or open file descriptors value, can be
configured.

gnu: python-psutil: Update to 5.8.0.

* gnu/packages/python-xyz.scm (python-psutil): Update to 5.8.0.
[home-page]: Update.
[description]: Please lint and re-flow text.

gnu: python-geventhttpclient: Adjust to build with updated gevent.

* gnu/packages/python-web.scm (python-geventhttpclient): Delete trailing #t.
[phases]{fix-compatibility-issue}: New phase.
{check}: Adjust comment and remove the extraneous string-append.

gnu: python-greenlet: Update to 1.0.0.

* gnu/packages/python-xyz.scm (python-greenlet): Update to 1.0.0.

gnu: python-gevent: Update to 21.1.2.

* gnu/packages/python-xyz.scm (python-gevent): Update to 21.1.2.  Delete
trailing #t.

ui: Fix typo in description.

* guix/ui.scm (switch-to-generation*): Fix typo in description.

gnu: Add stackistry.

* gnu/packages/astronomy.scm (stackistry): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Add libskry.

* gnu/packages/astronomy.scm (libskry): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Add python-astroalign.

* gnu/packages/astronomy.scm (python-astroalign): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Add python-sep.

* gnu/packages/astronomy.scm (python-sep): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Add python-pyerfa.

* gnu/packages/astronomy.scm (python-pyerfa): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Add erfa.

* gnu/packages/astronomy.scm (erfa): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Add qfits.

* gnu/packages/astronomy.scm (qfits): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Add python-skyfield.

* gnu/packages/astronomy.scm (python-skyfield): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Add python-extension-helpers.

* gnu/packages/python-xyz.scm (python-extension-helpers): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Add python-pytest-astropy.

* gnu/packages/python-check.scm (python-pytest-astropy): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Add python-pytest-astropy-header.

* gnu/packages/python-check.scm (python-pytest-astropy-header): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: nushell: Update to 0.27.1.

* gnu/packages/shells.scm (nushell): Update to 0.27.1.
[arguments]: Add rust-serial-test to Cargo development inputs.
(rust-nu-cli-0.27):
(rust-nu-command-0.27):
(rust-nu-data-0.27):
(rust-nu-engine-0.27):
(rust-nu-errors-0.27):
(rust-nu-json-0.27):
(rust-nu-parser-0.27):
(rust-nu-plugin-0.27):
(rust-nu-plugin-binaryview-0.27):
(rust-nu-plugin-chart-0.27):
(rust-nu-plugin-fetch-0.27):
(rust-nu-plugin-from-bson-0.27):
(rust-nu-plugin-from-sqlite-0.27):
(rust-nu-plugin-inc-0.27):
(rust-nu-plugin-match-0.27):
(rust-nu-plugin-post-0.27):
(rust-nu-plugin-ps-0.27):
(rust-nu-plugin-s3-0.27):
(rust-nu-plugin-selector-0.27):
(rust-nu-plugin-start-0.27):
(rust-nu-plugin-sys-0.27):
(rust-nu-plugin-textview-0.27):
(rust-nu-plugin-to-bson-0.27):
(rust-nu-plugin-to-sqlite-0.27):
(rust-nu-plugin-tree-0.27):
(rust-nu-plugin-xpath-0.27):
(rust-nu-protocol-0.27):
(rust-nu-source-0.27):
(rust-nu-stream-0.27):
(rust-nu-table-0.27):
(rust-nu-test-support-0.27):
(rust-nu-value-ext-0.27): Update to 0.27.1.

gnu: Add cl-glsl-packing.

* gnu/packages/lisp-xyz.scm (cl-glsl-packing, ecl-glsl-packing,
  sbcl-glsl-packing): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Add vitetris.

* gnu/packages/games.scm (vitetris): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: emacs-elpy: Fix build.

Fixes <https://issues.guix.gnu.org/46516>, which was caused by commit
41abf3b3a0fabe06817f3940cba778974ce79c46.

* gnu/packages/emacs-xyz.scm (emacs-elpy)[phases]
{patch-ffip-project-search-call}: New phase.

Reported-by: Simon Streit <simon@netpanic.org> and others.

gnu: webrtc-for-telegram-desktop: Adjust native inputs.

This fixes a segmentation fault in telegram-desktop.

* gnu/packages/telegram.scm (webrtc-for-telegram-desktop) [native-inputs]:
Add gcc-9 and perl.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>

gnu: Add emacs-kbd.

* gnu/packages/emacs-xyz.scm (emacs-kbd): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: BIND: Point out where to find the release notes.

The isc.org web page is hard to navigate and designed to steer users
into support contracts, so let's give a hint for Guix packagers.

* gnu/packages/dns.scm (bind): Add comment.

gnu: isc-dhcp: Update bundled BIND to 9.11.28 [fixes CVE-2020-8625].

* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled BIND to 9.11.28.

gnu: gperftools: Update to 2.8.1.

* gnu/packages/cpp.scm (gperftools): Update to 2.8.1.
[arguments]: Set '#:parallel-tests? #f'.

Co-authored-by: Leo Famulari <leo@famulari.name>

gnu: emacs-eldev: Update to 0.8.1.

* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 0.8.1.
[arguments]: Skip failing tests in an additional phase.

gnu: r-shiny: Update to 1.6.0.

* gnu/packages/cran.scm (r-shiny): Update to 1.6.0.
[source]: Remove minified JavaScript files in a snippet.
[arguments]: Update phase replace-bundled-minified-JavaScript.
[propagated-inputs]: Add r-bslib, r-cachem, r-commonmark, r-ellipsis, r-glue,
and r-lifecycle.
[inputs]: Remove js-html5shiv, js-json2, js-respond, and js-es5-shim.
[native-inputs]: Add js-bootstrap-accessibility.

gnu: Add r-bslib.

* gnu/packages/cran.scm (r-bslib): New variable.

gnu: Add r-sass.

* gnu/packages/cran.scm (r-sass): New variable.

gnu: Add r-jquerylib.

* gnu/packages/cran.scm (r-jquerylib): New variable.

gnu: emacs-execline: Fix version string.

* gnu/packages/emacs-xyz.scm (emacs-execline): Use version tag matching commit
chosen.

gnu: emacs-org-roam: Update to 1.2.3.

* gnu/packages/emacs-xyz.scm (emacs-org-roam): Update to 1.2.3.

gnu: emacs-company-emoji: Update to 2.6.1.

* gnu/packages/emacs-xyz.scm (emacs-company-emoji): Update to 2.6.1.

gnu: emacs-no-littering: Update to 1.2.1.

* gnu/packages/emacs-xyz.scm (emacs-no-littering): Update to 1.2.1.
[synopsis]: Use appropriate Texinfo syntax.

gnu: emacs-parseclj: Fix description.

* gnu/packages/emacs-xyz.scm (emacs-parseclj)[description]: Use full sentence.

gnu: emacs-parseclj: Update to 0.2.0.

* gnu/packages/emacs-xyz.scm (emacs-parseclj): Update to 0.2.0.

gnu: emacs-parseedn: Fix description.

* gnu/packages/emacs-xyz.scm (emacs-parseedn):
[description]: Use full sentence.

gnu: emacs-parseedn: Update to 0.2.0.

* gnu/packages/emacs-xyz.scm (emacs-parseedn): Update to 0.2.0.

gnu: emacs-rime: Update to 1.0.4.

* gnu/packages/emacs-xyz.scm (emacs-rime): Update to 1.0.4.

gnu: ecl-numcl: Simplify package definition.

* gnu/packages/lisp-xyz.scm (ecl-numcl)[arguments]: Remove obsolete keyword
  substitution.

gnu: sbcl-numcl: Update to 0.2.0-1.d19f363.

* gnu/packages/lisp-xyz.scm (sbcl-numcl): Update to 0.2.0-1.d19f363.
  [arguments]: Activate tests.
  [home-page]: Update URL.
  [description]: Simplify description.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: sbcl-lift: Update to 1.7.1-2.2594160.

* gnu/packages/lisp-xyz.scm (sbcl-lift): Update to 1.7.1-2.2594160.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Add cl-trivial-channels.

* gnu/packages/lisp-xyz.scm (cl-trivial-channels, ecl-trivial-channels,
  sbcl-trivial-channels): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: emacs-unfill: Update to 0.3.

* gnu/packages/emacs-xyz.scm (emacs-unfill): Update to 0.3.

gnu: emacs-elixir-mode: Update to 2.3.2.

* gnu/packages/emacs-xyz.scm (emacs-elixir-mode): Update to 2.3.2.

gnu: Add r-archr.

* gnu/packages/bioinformatics.scm (r-archr): New variable.