jackhill/guix/guix.git
3 years agognu: linux-libre@5.7: Update to 5.7.2.
Mark H Weaver [Thu, 11 Jun 2020 20:14:49 +0000 (16:14 -0400)]
gnu: linux-libre@5.7: Update to 5.7.2.

* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.128.
(linux-libre-5.7-pristine-source): Update hash.

3 years agognu: linux-libre@5.6: Remove.
Mark H Weaver [Thu, 11 Jun 2020 20:11:35 +0000 (16:11 -0400)]
gnu: linux-libre@5.6: Remove.

Users of linux-libre-5.6 should migrate to version 5.7.

* gnu/packages/linux.scm (deblob-scripts-5.6, linux-libre-5.6-version)
(linux-libre-5.6-pristine-source, linux-libre-5.6-source)
(linux-libre-headers-5.6, linux-libre-arm-generic-5.6)
(linux-libre-arm64-generic-5.6): Remove variables.

3 years agognu: linux-libre@4.19: Update to 4.19.128.
Mark H Weaver [Thu, 11 Jun 2020 20:08:48 +0000 (16:08 -0400)]
gnu: linux-libre@4.19: Update to 4.19.128.

* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.128.
(linux-libre-4.19-pristine-source): Update hash.

3 years agognu: linux-libre@4.14: Update to 4.14.184.
Mark H Weaver [Thu, 11 Jun 2020 20:08:10 +0000 (16:08 -0400)]
gnu: linux-libre@4.14: Update to 4.14.184.

* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.184.
(linux-libre-4.14-pristine-source): Update hash.

3 years agognu: linux-libre@4.9: Update to 4.9.227.
Mark H Weaver [Thu, 11 Jun 2020 20:07:38 +0000 (16:07 -0400)]
gnu: linux-libre@4.9: Update to 4.9.227.

* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.227.
(linux-libre-4.9-pristine-source): Update hash.

3 years agognu: linux-libre@4.4: Update to 4.4.227.
Mark H Weaver [Thu, 11 Jun 2020 20:06:41 +0000 (16:06 -0400)]
gnu: linux-libre@4.4: Update to 4.4.227.

* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.227.
(linux-libre-4.4-pristine-source): Update hash.

3 years agognu: adns: Update to 1.6.0.
Efraim Flashner [Thu, 11 Jun 2020 20:13:40 +0000 (23:13 +0300)]
gnu: adns: Update to 1.6.0.

* gnu/packages/adns.scm (adns): Update to 1.6.0.
[source]: Use https.
[native-inputs]: Add m4.

3 years agognu: subversion: Update to 1.14.0.
Efraim Flashner [Thu, 11 Jun 2020 12:06:48 +0000 (15:06 +0300)]
gnu: subversion: Update to 1.14.0.

* gnu/packages/version-control.scm (subversion): Update to 1.14.0.
[source]: Update source URI.

3 years agognu: nghttp2: Replace with version 1.41 [fixes CVE-2020-11080].
Ludovic Courtès [Thu, 11 Jun 2020 16:54:15 +0000 (18:54 +0200)]
gnu: nghttp2: Replace with version 1.41 [fixes CVE-2020-11080].

* gnu/packages/web.scm (nghttp2-1.41): New variable.
(nghttp2)[replacement]: New field.

3 years agopackages: 'package-grafts' returns grafts for all the relevant outputs.
Ludovic Courtès [Thu, 11 Jun 2020 16:24:59 +0000 (18:24 +0200)]
packages: 'package-grafts' returns grafts for all the relevant outputs.

Fixes <https://bugs.gnu.org/41796>.
Reported by Jakub Kądziołka <kuba@kadziolka.net>.

* guix/packages.scm (input-graft): Add 'output' parameter and honor it.
Add OUTPUT to the cache key.
(input-cross-graft): Likewise.
(fold-bag-dependencies): Operate on inputs instead of nodes.  Turn
VISITED into a vhash instead of a set.  Pass PROC HEAD and OUTPUT
instead of just HEAD.
(bag-grafts): Adjust accordingly.
* tests/packages.scm ("package-grafts, dependency on several outputs"):
New test.

3 years agognu: r-with-tests, r-minimal: Update to 4.0.1.
Ricardo Wurmus [Thu, 11 Jun 2020 15:02:01 +0000 (17:02 +0200)]
gnu: r-with-tests, r-minimal: Update to 4.0.1.

* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.1.

3 years agognu: r-brms: Update to 2.13.0.
Ricardo Wurmus [Thu, 11 Jun 2020 13:15:00 +0000 (15:15 +0200)]
gnu: r-brms: Update to 2.13.0.

* gnu/packages/cran.scm (r-brms): Update to 2.13.0.

3 years agognu: r-crochet: Update to 2.3.0.
Ricardo Wurmus [Thu, 11 Jun 2020 13:14:48 +0000 (15:14 +0200)]
gnu: r-crochet: Update to 2.3.0.

* gnu/packages/cran.scm (r-crochet): Update to 2.3.0.
[native-inputs]: Add r-knitr.

3 years agognu: r-openmx: Update to 2.17.4.
Ricardo Wurmus [Thu, 11 Jun 2020 13:14:42 +0000 (15:14 +0200)]
gnu: r-openmx: Update to 2.17.4.

* gnu/packages/cran.scm (r-openmx): Update to 2.17.4.

3 years agognu: r-stanheaders: Update to 2.21.0-5.
Ricardo Wurmus [Thu, 11 Jun 2020 13:14:24 +0000 (15:14 +0200)]
gnu: r-stanheaders: Update to 2.21.0-5.

* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-5.
[propagated-inputs]: Add r-rcppeigen and r-rcppparallel.

3 years agognu: r-semtools: Update to 0.5-3.
Ricardo Wurmus [Thu, 11 Jun 2020 13:14:18 +0000 (15:14 +0200)]
gnu: r-semtools: Update to 0.5-3.

* gnu/packages/cran.scm (r-semtools): Update to 0.5-3.

3 years agognu: r-sem: Update to 3.1-11.
Ricardo Wurmus [Thu, 11 Jun 2020 13:14:12 +0000 (15:14 +0200)]
gnu: r-sem: Update to 3.1-11.

* gnu/packages/cran.scm (r-sem): Update to 3.1-11.

3 years agognu: r-emplik: Update to 1.1-1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:14:06 +0000 (15:14 +0200)]
gnu: r-emplik: Update to 1.1-1.

* gnu/packages/cran.scm (r-emplik): Update to 1.1-1.

3 years agognu: r-rsvg: Update to 2.1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:13:54 +0000 (15:13 +0200)]
gnu: r-rsvg: Update to 2.1.

* gnu/packages/cran.scm (r-rsvg): Update to 2.1.
[native-inputs]: Add r-knitr.

3 years agognu: r-actuar: Update to 3.0-0.
Ricardo Wurmus [Thu, 11 Jun 2020 13:13:47 +0000 (15:13 +0200)]
gnu: r-actuar: Update to 3.0-0.

* gnu/packages/cran.scm (r-actuar): Update to 3.0-0.

3 years agognu: r-gdina: Update to 2.8.0.
Ricardo Wurmus [Thu, 11 Jun 2020 13:13:40 +0000 (15:13 +0200)]
gnu: r-gdina: Update to 2.8.0.

* gnu/packages/cran.scm (r-gdina): Update to 2.8.0.

3 years agognu: r-seewave: Update to 2.1.6.
Ricardo Wurmus [Thu, 11 Jun 2020 13:13:28 +0000 (15:13 +0200)]
gnu: r-seewave: Update to 2.1.6.

* gnu/packages/cran.scm (r-seewave): Update to 2.1.6.
[inputs]: Add libsndfile.

3 years agognu: r-elasticnet: Update to 1.3.
Ricardo Wurmus [Thu, 11 Jun 2020 13:13:19 +0000 (15:13 +0200)]
gnu: r-elasticnet: Update to 1.3.

* gnu/packages/cran.scm (r-elasticnet): Update to 1.3.

3 years agognu: r-showtext: Update to 0.8-1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:13:13 +0000 (15:13 +0200)]
gnu: r-showtext: Update to 0.8-1.

* gnu/packages/cran.scm (r-showtext): Update to 0.8-1.

3 years agognu: r-showtextdb: Update to 3.0.
Ricardo Wurmus [Thu, 11 Jun 2020 13:13:06 +0000 (15:13 +0200)]
gnu: r-showtextdb: Update to 3.0.

* gnu/packages/cran.scm (r-showtextdb): Update to 3.0.

3 years agognu: r-abcrlda: Update to 1.0.3.
Ricardo Wurmus [Thu, 11 Jun 2020 13:12:58 +0000 (15:12 +0200)]
gnu: r-abcrlda: Update to 1.0.3.

* gnu/packages/cran.scm (r-abcrlda): Update to 1.0.3.

3 years agognu: r-rgdal: Update to 1.5-10.
Ricardo Wurmus [Thu, 11 Jun 2020 13:12:46 +0000 (15:12 +0200)]
gnu: r-rgdal: Update to 1.5-10.

* gnu/packages/cran.scm (r-rgdal): Update to 1.5-10.
[native-inputs]: Add r-knitr.

3 years agognu: r-parameters: Update to 0.8.0.
Ricardo Wurmus [Thu, 11 Jun 2020 13:12:37 +0000 (15:12 +0200)]
gnu: r-parameters: Update to 0.8.0.

* gnu/packages/cran.scm (r-parameters): Update to 0.8.0.

3 years agognu: r-systemfonts: Update to 0.2.3.
Ricardo Wurmus [Thu, 11 Jun 2020 13:12:30 +0000 (15:12 +0200)]
gnu: r-systemfonts: Update to 0.2.3.

* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.3.

3 years agognu: r-rhpcblasctl: Update to 0.20-137.
Ricardo Wurmus [Thu, 11 Jun 2020 13:12:24 +0000 (15:12 +0200)]
gnu: r-rhpcblasctl: Update to 0.20-137.

* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-137.

3 years agognu: r-ggraph: Update to 2.0.3.
Ricardo Wurmus [Thu, 11 Jun 2020 13:12:15 +0000 (15:12 +0200)]
gnu: r-ggraph: Update to 2.0.3.

* gnu/packages/cran.scm (r-ggraph): Update to 2.0.3.

3 years agognu: r-europepmc: Update to 0.4.
Ricardo Wurmus [Thu, 11 Jun 2020 13:11:48 +0000 (15:11 +0200)]
gnu: r-europepmc: Update to 0.4.

* gnu/packages/cran.scm (r-europepmc): Update to 0.4.
[propagated-inputs]: Add r-rlang, r-tibble, and r-tidyr.
[native-inputs]: Add r-knitr.

3 years agognu: r-msigdbr: Update to 7.1.1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:11:30 +0000 (15:11 +0200)]
gnu: r-msigdbr: Update to 7.1.1.

* gnu/packages/cran.scm (r-msigdbr): Update to 7.1.1.
[native-inputs]: Add r-knitr.

3 years agognu: r-bookdown: Update to 0.19.
Ricardo Wurmus [Thu, 11 Jun 2020 13:11:21 +0000 (15:11 +0200)]
gnu: r-bookdown: Update to 0.19.

* gnu/packages/cran.scm (r-bookdown): Update to 0.19.

3 years agognu: r-rms: Update to 6.0-0.
Ricardo Wurmus [Thu, 11 Jun 2020 13:11:05 +0000 (15:11 +0200)]
gnu: r-rms: Update to 6.0-0.

* gnu/packages/cran.scm (r-rms): Update to 6.0-0.
[propagated-inputs]: Add r-cluster, r-digest, and r-mass.

3 years agognu: r-polspline: Update to 1.1.19.
Ricardo Wurmus [Thu, 11 Jun 2020 13:10:55 +0000 (15:10 +0200)]
gnu: r-polspline: Update to 1.1.19.

* gnu/packages/cran.scm (r-polspline): Update to 1.1.19.

3 years agognu: r-lemon: Update to 0.4.5.
Ricardo Wurmus [Thu, 11 Jun 2020 13:10:39 +0000 (15:10 +0200)]
gnu: r-lemon: Update to 0.4.5.

* gnu/packages/cran.scm (r-lemon): Update to 0.4.5.
[native-inputs]: Add r-knitr.

3 years agognu: r-picante: Update to 1.8.2.
Ricardo Wurmus [Thu, 11 Jun 2020 13:10:28 +0000 (15:10 +0200)]
gnu: r-picante: Update to 1.8.2.

* gnu/packages/cran.scm (r-picante): Update to 1.8.2.

3 years agognu: r-lavaan: Update to 0.6-6.
Ricardo Wurmus [Thu, 11 Jun 2020 13:10:22 +0000 (15:10 +0200)]
gnu: r-lavaan: Update to 0.6-6.

* gnu/packages/cran.scm (r-lavaan): Update to 0.6-6.

3 years agognu: r-cmprsk: Update to 2.2-10.
Ricardo Wurmus [Thu, 11 Jun 2020 13:10:15 +0000 (15:10 +0200)]
gnu: r-cmprsk: Update to 2.2-10.

* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-10.

3 years agognu: r-gmp: Update to 0.6-0.
Ricardo Wurmus [Thu, 11 Jun 2020 13:10:07 +0000 (15:10 +0200)]
gnu: r-gmp: Update to 0.6-0.

* gnu/packages/cran.scm (r-gmp): Update to 0.6-0.

3 years agognu: r-bigrquery: Update to 1.3.1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:10:01 +0000 (15:10 +0200)]
gnu: r-bigrquery: Update to 1.3.1.

* gnu/packages/cran.scm (r-bigrquery): Update to 1.3.1.

3 years agognu: r-iso: Update to 0.0-18.1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:09:54 +0000 (15:09 +0200)]
gnu: r-iso: Update to 0.0-18.1.

* gnu/packages/cran.scm (r-iso): Update to 0.0-18.1.

3 years agognu: r-sjplot: Update to 2.8.4.
Ricardo Wurmus [Thu, 11 Jun 2020 13:09:47 +0000 (15:09 +0200)]
gnu: r-sjplot: Update to 2.8.4.

* gnu/packages/cran.scm (r-sjplot): Update to 2.8.4.

3 years agognu: r-effectsize: Update to 0.3.1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:09:40 +0000 (15:09 +0200)]
gnu: r-effectsize: Update to 0.3.1.

* gnu/packages/cran.scm (r-effectsize): Update to 0.3.1.

3 years agognu: r-bayesplot: Update to 1.7.2.
Ricardo Wurmus [Thu, 11 Jun 2020 13:09:25 +0000 (15:09 +0200)]
gnu: r-bayesplot: Update to 1.7.2.

* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.2.
[native-inputs]: Add r-knitr.

3 years agognu: r-emmeans: Update to 1.4.7.
Ricardo Wurmus [Thu, 11 Jun 2020 13:09:17 +0000 (15:09 +0200)]
gnu: r-emmeans: Update to 1.4.7.

* gnu/packages/cran.scm (r-emmeans): Update to 1.4.7.

3 years agognu: r-mosaicdata: Update to 0.18.0.
Ricardo Wurmus [Thu, 11 Jun 2020 13:09:07 +0000 (15:09 +0200)]
gnu: r-mosaicdata: Update to 0.18.0.

* gnu/packages/cran.scm (r-mosaicdata): Update to 0.18.0.

3 years agognu: r-doby: Update to 4.6.6.
Ricardo Wurmus [Thu, 11 Jun 2020 13:08:41 +0000 (15:08 +0200)]
gnu: r-doby: Update to 4.6.6.

* gnu/packages/cran.scm (r-doby): Update to 4.6.6.
[propagated-inputs]: Remove r-dplyr and r-plyr.
[native-inputs]: Add r-knitr.

3 years agognu: r-flextable: Update to 0.5.10.
Ricardo Wurmus [Thu, 11 Jun 2020 13:08:26 +0000 (15:08 +0200)]
gnu: r-flextable: Update to 0.5.10.

* gnu/packages/cran.scm (r-flextable): Update to 0.5.10.
[propagated-inputs]: Add r-uuid.

3 years agognu: r-sjmisc: Update to 2.8.5.
Ricardo Wurmus [Thu, 11 Jun 2020 13:08:15 +0000 (15:08 +0200)]
gnu: r-sjmisc: Update to 2.8.5.

* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.5.

3 years agognu: r-sjlabelled: Update to 1.1.5.
Ricardo Wurmus [Thu, 11 Jun 2020 13:08:08 +0000 (15:08 +0200)]
gnu: r-sjlabelled: Update to 1.1.5.

* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.5.

3 years agognu: r-insight: Update to 0.8.5.
Ricardo Wurmus [Thu, 11 Jun 2020 13:07:59 +0000 (15:07 +0200)]
gnu: r-insight: Update to 0.8.5.

* gnu/packages/cran.scm (r-insight): Update to 0.8.5.

3 years agognu: r-overlap: Update to 0.3.3.
Ricardo Wurmus [Thu, 11 Jun 2020 13:07:50 +0000 (15:07 +0200)]
gnu: r-overlap: Update to 0.3.3.

* gnu/packages/cran.scm (r-overlap): Update to 0.3.3.

3 years agognu: r-officer: Update to 0.3.11.
Ricardo Wurmus [Thu, 11 Jun 2020 13:07:42 +0000 (15:07 +0200)]
gnu: r-officer: Update to 0.3.11.

* gnu/packages/cran.scm (r-officer): Update to 0.3.11.

3 years agognu: r-ellipse: Update to 0.4.2.
Ricardo Wurmus [Thu, 11 Jun 2020 13:07:33 +0000 (15:07 +0200)]
gnu: r-ellipse: Update to 0.4.2.

* gnu/packages/cran.scm (r-ellipse): Update to 0.4.2.

3 years agognu: r-reticulate: Update to 1.16.
Ricardo Wurmus [Thu, 11 Jun 2020 13:07:25 +0000 (15:07 +0200)]
gnu: r-reticulate: Update to 1.16.

* gnu/packages/cran.scm (r-reticulate): Update to 1.16.

3 years agognu: r-promises: Update to 1.1.1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:07:10 +0000 (15:07 +0200)]
gnu: r-promises: Update to 1.1.1.

* gnu/packages/cran.scm (r-promises): Update to 1.1.1.
[native-inputs]: Add r-knitr.

3 years agognu: r-later: Update to 1.1.0.1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:06:52 +0000 (15:06 +0200)]
gnu: r-later: Update to 1.1.0.1.

* gnu/packages/cran.scm (r-later): Update to 1.1.0.1.
[native-inputs]: Add r-knitr.

3 years agognu: r-maptools: Update to 1.0-1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:06:44 +0000 (15:06 +0200)]
gnu: r-maptools: Update to 1.0-1.

* gnu/packages/cran.scm (r-maptools): Update to 1.0-1.

3 years agognu: r-arules: Update to 1.6-6.
Ricardo Wurmus [Thu, 11 Jun 2020 13:06:35 +0000 (15:06 +0200)]
gnu: r-arules: Update to 1.6-6.

* gnu/packages/cran.scm (r-arules): Update to 1.6-6.

3 years agognu: r-tinytex: Update to 0.23.
Ricardo Wurmus [Thu, 11 Jun 2020 13:06:27 +0000 (15:06 +0200)]
gnu: r-tinytex: Update to 0.23.

* gnu/packages/cran.scm (r-tinytex): Update to 0.23.

3 years agognu: r-vctrs: Update to 0.3.1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:06:20 +0000 (15:06 +0200)]
gnu: r-vctrs: Update to 0.3.1.

* gnu/packages/cran.scm (r-vctrs): Update to 0.3.1.

3 years agognu: r-xfun: Update to 0.14.
Ricardo Wurmus [Thu, 11 Jun 2020 13:06:11 +0000 (15:06 +0200)]
gnu: r-xfun: Update to 0.14.

* gnu/packages/cran.scm (r-xfun): Update to 0.14.

3 years agognu: r-mice: Update to 3.9.0.
Ricardo Wurmus [Thu, 11 Jun 2020 13:06:02 +0000 (15:06 +0200)]
gnu: r-mice: Update to 3.9.0.

* gnu/packages/cran.scm (r-mice): Update to 3.9.0.

3 years agognu: r-jomo: Update to 2.7-1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:05:52 +0000 (15:05 +0200)]
gnu: r-jomo: Update to 2.7-1.

* gnu/packages/cran.scm (r-jomo): Update to 2.7-1.

3 years agognu: r-squarem: Update to 2020.3.
Ricardo Wurmus [Thu, 11 Jun 2020 13:05:43 +0000 (15:05 +0200)]
gnu: r-squarem: Update to 2020.3.

* gnu/packages/cran.scm (r-squarem): Update to 2020.3.

3 years agognu: r-fitdistrplus: Update to 1.1-1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:05:20 +0000 (15:05 +0200)]
gnu: r-fitdistrplus: Update to 1.1-1.

* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.1-1.
[propagated-inputs]: Remove r-npsurv.
[native-inputs]: Add r-knitr.

3 years agognu: r-sp: Update to 1.4-2.
Ricardo Wurmus [Thu, 11 Jun 2020 13:05:09 +0000 (15:05 +0200)]
gnu: r-sp: Update to 1.4-2.

* gnu/packages/cran.scm (r-sp): Update to 1.4-2.

3 years agognu: r-ggally: Update to 2.0.0.
Ricardo Wurmus [Thu, 11 Jun 2020 13:04:46 +0000 (15:04 +0200)]
gnu: r-ggally: Update to 2.0.0.

* gnu/packages/cran.scm (r-ggally): Update to 2.0.0.
[propagated-inputs]: Add r-lifecycle and r-scales.

3 years agognu: r-getoptlong: Update to 1.0.0.
Ricardo Wurmus [Thu, 11 Jun 2020 13:04:21 +0000 (15:04 +0200)]
gnu: r-getoptlong: Update to 1.0.0.

* gnu/packages/cran.scm (r-getoptlong): Update to 1.0.0.
[propagated-inputs]: Add r-crayon.
[native-inputs]: Add r-knitr.

3 years agognu: r-globaloptions: Update to 0.1.2.
Ricardo Wurmus [Thu, 11 Jun 2020 13:04:05 +0000 (15:04 +0200)]
gnu: r-globaloptions: Update to 0.1.2.

* gnu/packages/cran.scm (r-globaloptions): Update to 0.1.2.
[native-inputs]: Add r-knitr.

3 years agognu: r-pkgload: Update to 1.1.0.
Ricardo Wurmus [Thu, 11 Jun 2020 13:03:49 +0000 (15:03 +0200)]
gnu: r-pkgload: Update to 1.1.0.

* gnu/packages/cran.scm (r-pkgload): Update to 1.1.0.
[propagated-inputs]: Add r-cli and r-crayon.

3 years agognu: r-glue: Update to 1.4.1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:03:38 +0000 (15:03 +0200)]
gnu: r-glue: Update to 1.4.1.

* gnu/packages/cran.scm (r-glue): Update to 1.4.1.

3 years agognu: r-ape: Update to 5.4.
Ricardo Wurmus [Thu, 11 Jun 2020 13:03:28 +0000 (15:03 +0200)]
gnu: r-ape: Update to 5.4.

* gnu/packages/cran.scm (r-ape): Update to 5.4.

3 years agognu: r-haven: Update to 2.3.1.
Ricardo Wurmus [Thu, 11 Jun 2020 13:03:06 +0000 (15:03 +0200)]
gnu: r-haven: Update to 2.3.1.

* gnu/packages/cran.scm (r-haven): Update to 2.3.1.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-vctrs.

3 years agognu: r-d3r: Update to 0.9.0.
Ricardo Wurmus [Thu, 11 Jun 2020 13:02:36 +0000 (15:02 +0200)]
gnu: r-d3r: Update to 0.9.0.

* gnu/packages/cran.scm (r-d3r): Update to 0.9.0.
[propagated-inputs]: Add r-rlang.

3 years agognu: r-servr: Update to 0.17.
Ricardo Wurmus [Thu, 11 Jun 2020 12:38:24 +0000 (14:38 +0200)]
gnu: r-servr: Update to 0.17.

* gnu/packages/cran.scm (r-servr): Update to 0.17.

3 years agognu: r-httpuv: Update to 1.5.4.
Ricardo Wurmus [Thu, 11 Jun 2020 12:38:14 +0000 (14:38 +0200)]
gnu: r-httpuv: Update to 1.5.4.

* gnu/packages/cran.scm (r-httpuv): Update to 1.5.4.

3 years agognu: r-modelr: Update to 0.1.8.
Ricardo Wurmus [Thu, 11 Jun 2020 12:37:51 +0000 (14:37 +0200)]
gnu: r-modelr: Update to 0.1.8.

* gnu/packages/cran.scm (r-modelr): Update to 0.1.8.
[propagated-inputs]: Remove r-dplyr; add r-vctrs.

3 years agognu: r-ellipsis: Update to 0.3.1.
Ricardo Wurmus [Thu, 11 Jun 2020 12:37:41 +0000 (14:37 +0200)]
gnu: r-ellipsis: Update to 0.3.1.

* gnu/packages/cran.scm (r-ellipsis): Update to 0.3.1.

3 years agognu: r-ggpmisc: Update to 0.3.5.
Ricardo Wurmus [Thu, 11 Jun 2020 12:37:05 +0000 (14:37 +0200)]
gnu: r-ggpmisc: Update to 0.3.5.

* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.5.
[propagated-inputs]: Add r-magrittr, r-rlang, r-scales, and r-stringr.
[native-inputs]: Add r-knitr.

3 years agognu: r-lubridate: Update to 1.7.9.
Ricardo Wurmus [Thu, 11 Jun 2020 12:36:46 +0000 (14:36 +0200)]
gnu: r-lubridate: Update to 1.7.9.

* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.9.

3 years agognu: r-sn: Update to 1.6-2.
Ricardo Wurmus [Thu, 11 Jun 2020 12:36:40 +0000 (14:36 +0200)]
gnu: r-sn: Update to 1.6-2.

* gnu/packages/statistics.scm (r-sn): Update to 1.6-2.

3 years agognu: r-mnormt: Update to 2.0.0.
Ricardo Wurmus [Thu, 11 Jun 2020 12:36:19 +0000 (14:36 +0200)]
gnu: r-mnormt: Update to 2.0.0.

* gnu/packages/statistics.scm (r-mnormt): Update to 2.0.0.
[propagated-inputs]: Add r-tmvnsim.

3 years agognu: Add r-tmvnsim.
Ricardo Wurmus [Thu, 11 Jun 2020 12:33:01 +0000 (14:33 +0200)]
gnu: Add r-tmvnsim.

* gnu/packages/statistics.scm (r-tmvnsim): New variable.

3 years agognu: r-car: Update to 3.0-8.
Ricardo Wurmus [Thu, 11 Jun 2020 12:32:49 +0000 (14:32 +0200)]
gnu: r-car: Update to 3.0-8.

* gnu/packages/statistics.scm (r-car): Update to 3.0-8.

3 years agognu: r-cardata: Update to 3.0-4.
Ricardo Wurmus [Thu, 11 Jun 2020 12:32:40 +0000 (14:32 +0200)]
gnu: r-cardata: Update to 3.0-4.

* gnu/packages/statistics.scm (r-cardata): Update to 3.0-4.

3 years agognu: r-tidyr: Update to 1.1.0.
Ricardo Wurmus [Thu, 11 Jun 2020 12:32:33 +0000 (14:32 +0200)]
gnu: r-tidyr: Update to 1.1.0.

* gnu/packages/statistics.scm (r-tidyr): Update to 1.1.0.

3 years agognu: r-mvtnorm: Update to 1.1-1.
Ricardo Wurmus [Thu, 11 Jun 2020 12:32:26 +0000 (14:32 +0200)]
gnu: r-mvtnorm: Update to 1.1-1.

* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-1.

3 years agognu: r-glmnet: Update to 4.0.
Ricardo Wurmus [Thu, 11 Jun 2020 12:32:03 +0000 (14:32 +0200)]
gnu: r-glmnet: Update to 4.0.

* gnu/packages/statistics.scm (r-glmnet): Update to 4.0.
[native-inputs]: Add r-knitr.

3 years agognu: r-rmarkdown: Update to 2.2.
Ricardo Wurmus [Thu, 11 Jun 2020 12:31:50 +0000 (14:31 +0200)]
gnu: r-rmarkdown: Update to 2.2.

* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.2.
[native-inputs]: Add r-knitr.

3 years agognu: r-rcpparmadillo: Update to 0.9.900.1.0.
Ricardo Wurmus [Thu, 11 Jun 2020 12:31:41 +0000 (14:31 +0200)]
gnu: r-rcpparmadillo: Update to 0.9.900.1.0.

* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.1.0.

3 years agognu: r-backports: Update to 1.1.7.
Ricardo Wurmus [Thu, 11 Jun 2020 12:31:32 +0000 (14:31 +0200)]
gnu: r-backports: Update to 1.1.7.

* gnu/packages/statistics.scm (r-backports): Update to 1.1.7.

3 years agognu: r-dbplyr: Update to 1.4.4.
Ricardo Wurmus [Thu, 11 Jun 2020 12:31:06 +0000 (14:31 +0200)]
gnu: r-dbplyr: Update to 1.4.4.

* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.4.
[propagated-inputs]: Add r-blob and r-magrittr.

3 years agognu: r-dplyr: Update to 1.0.0.
Ricardo Wurmus [Thu, 11 Jun 2020 12:30:11 +0000 (14:30 +0200)]
gnu: r-dplyr: Update to 1.0.0.

* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.0.
[propagated-inputs]: Remove r-assertthat, r-bh, r-pkgconfig, r-plogr, and
r-rcpp; add r-generics, r-lifecycle, and r-vctrs.

3 years agognu: r-ggplot2: Update to 3.3.1.
Ricardo Wurmus [Thu, 11 Jun 2020 12:29:48 +0000 (14:29 +0200)]
gnu: r-ggplot2: Update to 3.3.1.

* gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.1.
[native-inputs]: Add r-knitr.

3 years agognu: r-nlme: Update to 3.1-148.
Ricardo Wurmus [Thu, 11 Jun 2020 12:29:39 +0000 (14:29 +0200)]
gnu: r-nlme: Update to 3.1-148.

* gnu/packages/statistics.scm (r-nlme): Update to 3.1-148.

3 years agognu: r-foreign: Update to 0.8-80.
Ricardo Wurmus [Thu, 11 Jun 2020 12:29:29 +0000 (14:29 +0200)]
gnu: r-foreign: Update to 0.8-80.

* gnu/packages/statistics.scm (r-foreign): Update to 0.8-80.

3 years agognu: php: Update to 7.4.7.
Julien Lepiller [Thu, 11 Jun 2020 13:44:21 +0000 (15:44 +0200)]
gnu: php: Update to 7.4.7.

* gnu/packages/php.scm (php): Update to 7.4.7.