jackhill/guix/guix.git
6 years agoscripts: Use 'args-fold*' for command that do not honor build flags.
Ludovic Courtès [Fri, 27 Oct 2017 20:11:26 +0000 (13:11 -0700)]
scripts: Use 'args-fold*' for command that do not honor build flags.

Fixes <https://bugs.gnu.org/28984>.
Reported by Eric Bavier.

* guix/scripts/challenge.scm (guix-challenge): Use 'args-fold*' instead
of 'parse-command-line'.
* guix/scripts/size.scm (guix-size): Likewise.
* guix/scripts/weather.scm (guix-weather): Likewise.

6 years agognu: kicad: Build with ngspice support.
Theodoros Foradis [Fri, 27 Oct 2017 14:23:52 +0000 (17:23 +0300)]
gnu: kicad: Build with ngspice support.

* gnu/packages/engineering.scm (kicad):
[arguments] <configure-flags>: Add KICAD_SPICE flag.
[inputs]: Add libngspice.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6 years agognu: kicad: Update to commit 5f4599f.
Theodoros Foradis [Fri, 27 Oct 2017 14:23:30 +0000 (17:23 +0300)]
gnu: kicad: Update to commit 5f4599f.

* gnu/packages/engineering.scm (kicad): Update to commit 5f4599f.
[arguments]: Add "install-lib-3d" phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6 years agognu: kicad-library: Update to 4.0.6.
Theodoros Foradis [Fri, 27 Oct 2017 14:20:02 +0000 (17:20 +0300)]
gnu: kicad-library: Update to 4.0.6.

* gnu/packages/engineering.scm (kicad-library): Update to 4.0.6.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6 years agognu: Add qucs.
Theodoros Foradis [Fri, 27 Oct 2017 14:18:18 +0000 (17:18 +0300)]
gnu: Add qucs.

* gnu/packages/engineering.scm (qucs): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6 years agognu: freehdl: Depend on the current 'gcc-toolchain'.
Ludovic Courtès [Fri, 27 Oct 2017 19:37:38 +0000 (12:37 -0700)]
gnu: freehdl: Depend on the current 'gcc-toolchain'.

* gnu/packages/engineering.scm (freehdl)[inputs]: Change
'gcc-toolchain-5' to 'gcc-toolchain'.

6 years agognu: gcc: Add unversioned 'gcc-toolchain' variable.
Ludovic Courtès [Fri, 27 Oct 2017 19:35:49 +0000 (12:35 -0700)]
gnu: gcc: Add unversioned 'gcc-toolchain' variable.

Reported by Theodoros Foradis <theodoros@foradis.org>.

* gnu/packages/commencement.scm (gcc-toolchain): Rename to...
(make-gcc-toolchain): ... this.
(gcc-toolchain): New variable.
(gcc-toolchain-5): Turn into an alias for 'gcc-toolchain'.

6 years agognu: Add Catalan dictionary for Aspell.
Ludovic Courtès [Fri, 27 Oct 2017 18:57:47 +0000 (11:57 -0700)]
gnu: Add Catalan dictionary for Aspell.

Hola!

* gnu/packages/aspell.scm (aspell-dict-ca): New variable.

6 years agognu: Add hunspell-dict-en*.
Ludovic Courtès [Fri, 27 Oct 2017 16:28:46 +0000 (09:28 -0700)]
gnu: Add hunspell-dict-en*.

* gnu/packages/aspell.scm (aspell-word-list): New procedure.
(define-word-list-dictionary): New macro.
(hunspell-dict-en, hunspell-dict-en-au, hunspell-dict-en-ca)
(hunspell-dict-en-gb, hunspell-dict-en-gb-ize, hunspell-dict-en-us): New
variables.

6 years agognu: freehdl: Fix gvhdl and freehdl-gennodes scripts.
Theodoros Foradis [Fri, 27 Oct 2017 14:18:17 +0000 (17:18 +0300)]
gnu: freehdl: Fix gvhdl and freehdl-gennodes scripts.

* gnu/packages/engineering.scm (freehdl):
[arguments] <phases>: Add patch-gvhdl and patch-freehdl-gennodes phases.
Wrap-program "/bin/gvhdl" in make-wrapper phase.
[inputs]: Add guile-2.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6 years agognu: Add gavl.
ng0 [Fri, 20 Oct 2017 18:32:12 +0000 (18:32 +0000)]
gnu: Add gavl.

* gnu/packages/video.scm (gavl): New variable.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
6 years agognu: Add python-pycanberra.
ng0 [Mon, 16 Oct 2017 15:31:04 +0000 (15:31 +0000)]
gnu: Add python-pycanberra.

* gnu/packages/libcanberra.scm (python-pycanberra): New variable.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
6 years agognu: Add gst-transcoder.
ng0 [Mon, 16 Oct 2017 05:41:50 +0000 (05:41 +0000)]
gnu: Add gst-transcoder.

* gnu/packages/video.scm (gst-transcoder): New variable.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
6 years agognu: Add gwl.
Roel Janssen [Fri, 27 Oct 2017 09:17:43 +0000 (11:17 +0200)]
gnu: Add gwl.

* gnu/packages/package-management.scm (gwl): New variable.

6 years agognu: exiv2: Add upstream security fixes.
Marius Bakke [Thu, 26 Oct 2017 20:58:28 +0000 (22:58 +0200)]
gnu: exiv2: Add upstream security fixes.

Fixes CVE-2017-14859, CVE-2017-14860, CVE-2017-14862 and CVE-2017-14864.

* gnu/packages/patches/exiv2-CVE-2017-14859-14862-14864.patch,
gnu/packages/patches/exiv2-CVE-2017-14860.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/image.scm (exiv2)[source]: Use them.

6 years agognu: synergy: Update repository URI and hash.
Maxim Cournoyer [Thu, 26 Oct 2017 12:11:38 +0000 (08:11 -0400)]
gnu: synergy: Update repository URI and hash.

* gnu/packages/synergy.scm (synergy)[uri]: Replace synergy by synergy-core.
[sha256]: Update to reflect the name change of the archive root directory.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6 years agognu: snakemake: Update to 4.2.0.
Kyle Meyer [Thu, 26 Oct 2017 21:02:30 +0000 (17:02 -0400)]
gnu: snakemake: Update to 4.2.0.

* gnu/packages/python.scm (snakemake): Update to 4.2.0.
[propagated-inputs]: Add python-appdirs, python-configargparse, python-pyyaml,
and python-ratelimiter, which are dependencies as of Snakemake 4.1.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
6 years agognu: Add python-ratelimiter.
Kyle Meyer [Thu, 26 Oct 2017 21:02:29 +0000 (17:02 -0400)]
gnu: Add python-ratelimiter.

* gnu/packages/python.scm (python-ratelimiter, python2-ratelimiter): New
variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
6 years agognu: python-configargparse: Update to 0.12.0.
Kyle Meyer [Thu, 26 Oct 2017 21:02:28 +0000 (17:02 -0400)]
gnu: python-configargparse: Update to 0.12.0.

* gnu/packages/python.scm (python-configargparse, python2-configargparse):
Update to 0.12.0.
[arguments]: Enable tests.
[native-inputs]: Add python-pyyaml, which is an optional dependency but
required to run the tests.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
6 years agognu: xpra: Update to 2.1.3.
Rutger Helling [Thu, 26 Oct 2017 12:47:12 +0000 (14:47 +0200)]
gnu: xpra: Update to 2.1.3.

* gnu/packages/xorg.scm (xpra): Update to 2.1.3.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
6 years agognu: ansible: Update to 2.4.1.0.
Jelle Licht [Thu, 26 Oct 2017 12:19:18 +0000 (14:19 +0200)]
gnu: ansible: Update to 2.4.1.0.

* gnu/packages/admin.scm (ansible): Update to 2.4.1.0.

6 years agognu: ffmpeg@3.3: Update to 3.3.5.
Marius Bakke [Thu, 26 Oct 2017 21:55:55 +0000 (23:55 +0200)]
gnu: ffmpeg@3.3: Update to 3.3.5.

* gnu/packages/video.scm (ffmpeg-3.3): Update to 3.3.5.

6 years agognu: Add ffmpeg@3.3 and use it on packages that fail with 3.4.
Rutger Helling [Thu, 26 Oct 2017 17:50:17 +0000 (19:50 +0200)]
gnu: Add ffmpeg@3.3 and use it on packages that fail with 3.4.

* gnu/packages/gstreamer.scm (gst-libav)[inputs]: Change ffmpeg to ffmpeg-3.3.
* gnu/packages/messaging.scm (qtox)[inputs]: Change ffmpeg to ffmpeg-3.3.
* gnu/packages/video.scm (ffmpeg-3.3): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
6 years agognu: wget: Update to 1.19.2 [fixes CVE-2017-13089 and CVE-2017-13090].
Marius Bakke [Thu, 26 Oct 2017 21:23:44 +0000 (23:23 +0200)]
gnu: wget: Update to 1.19.2 [fixes CVE-2017-13089 and CVE-2017-13090].

* gnu/packages/wget.scm (wget): Update to 1.19.2.
[source](uri): Change to '.lz' tarball.
[source](patches): Remove.
[native-inputs]: Add LZIP.
* gnu/packages/patches/wget-CVE-2017-6508.patch,
gnu/packages/patches/wget-fix-504-test-timeout.patch,
gnu/packages/patches/wget-perl-5.26.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.

6 years agognu: openrct2: Fix a few paths.
Rutger Helling [Sat, 21 Oct 2017 08:33:30 +0000 (10:33 +0200)]
gnu: openrct2: Fix a few paths.

* gnu/packages/games.scm (openrct2): Fix a few paths.

6 years agodoc: Document the installation of Go source code.
Leo Famulari [Thu, 26 Oct 2017 02:58:18 +0000 (22:58 -0400)]
doc: Document the installation of Go source code.

* doc/guix.texi (Build Systems): Document '#:install-source?' for the Go
build system.

6 years agobuild-system/go: Fix installation path of executable files.
Leo Famulari [Thu, 26 Oct 2017 02:43:36 +0000 (22:43 -0400)]
build-system/go: Fix installation path of executable files.

* guix/build/go-build-system.scm (setup-environment): Set GOBIN correctly.

6 years agognu: go: Update to 1.9.2.
Leo Famulari [Thu, 26 Oct 2017 01:55:30 +0000 (21:55 -0400)]
gnu: go: Update to 1.9.2.

* gnu/packages/golang.scm (go-1.9): Update to 1.9.2.

6 years agognu: ffmpeg: Update to 3.4.
Rutger Helling [Thu, 26 Oct 2017 13:20:35 +0000 (15:20 +0200)]
gnu: ffmpeg: Update to 3.4.

* gnu/packages/video.scm (ffmpeg): Update to 3.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
6 years agognu: node: Update to 8.7.0.
Jelle Licht [Mon, 23 Oct 2017 20:04:15 +0000 (22:04 +0200)]
gnu: node: Update to 8.7.0.

* gnu/packages/node.scm (node): Update to 8.7.0.
(node)[arguments]: Removed dgram mutlicast test. Removed dns test. Removed
broken linter test workaround.

6 years agognu: vsearch: Update to 2.5.1.
Ben Woodcroft [Thu, 26 Oct 2017 09:55:29 +0000 (19:55 +1000)]
gnu: vsearch: Update to 2.5.1.

* gnu/packages/bioinformatics.scm (vsearch): Update to 2.5.1.

6 years agognu: r-nloptr: Update package hash.
Efraim Flashner [Thu, 26 Oct 2017 07:45:49 +0000 (10:45 +0300)]
gnu: r-nloptr: Update package hash.

The source was repacked and reuploaded without incrementing the version
number. The difference was windows line endings on the windows files.

* gnu/packages/statistics.scm (r-nloptr)[source]: Update package hash.

6 years agognu: sorcer: Fix building on non-Intel hardware.
Efraim Flashner [Thu, 26 Oct 2017 05:36:57 +0000 (08:36 +0300)]
gnu: sorcer: Fix building on non-Intel hardware.

* gnu/packages/music.scm (sorcer)[arguments]: Add phase to remove
architecture specific build flags.

6 years agognu: virt-manager: Enable persistent configuration support.
Andy Patterson [Sun, 15 Oct 2017 20:03:28 +0000 (16:03 -0400)]
gnu: virt-manager: Enable persistent configuration support.

* gnu/packages/virtualization.scm (virt-manager)[inputs]: Add dconf.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6 years agognu: virt-manager: Wrap with GSettings schema and GIO modules search paths.
Andy Patterson [Sun, 15 Oct 2017 15:47:16 +0000 (11:47 -0400)]
gnu: virt-manager: Wrap with GSettings schema and GIO modules search paths.

Fixes a crash when opening the file chooser dialog.

* gnu/packages/virtualization.scm (virt-manager)[arguments]
<#:imported-modules>: Add (guix build glib-or-gtk-build-system).
<#:modules>: Import (guix build glib-or-gtk-build-system) as glib-or-gtk:.
<#:arguments>: Add 'glib-or-gtk-compile-schemas and 'glib-or-gtk-wrap.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6 years agognu: Add python2-roca-detect.
ng0 [Sat, 21 Oct 2017 23:45:51 +0000 (23:45 +0000)]
gnu: Add python2-roca-detect.

* gnu/packages/crypto.scm (python2-roca-detect): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6 years agognu: Add python2-pgpdump.
ng0 [Sat, 21 Oct 2017 23:41:26 +0000 (23:41 +0000)]
gnu: Add python2-pgpdump.

* gnu/packages/gnupg.scm (python2-pgpdump): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6 years agognu: Add python-coloredlogs.
ng0 [Sat, 21 Oct 2017 23:29:17 +0000 (23:29 +0000)]
gnu: Add python-coloredlogs.

* gnu/packages/python.scm (python-coloredlogs, python2-coloredlogs): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6 years agognu: Add python-verboselogs.
ng0 [Sat, 21 Oct 2017 23:12:17 +0000 (23:12 +0000)]
gnu: Add python-verboselogs.

* gnu/packages/python.scm (python-verboselogs, python2-verboselogs): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6 years agognu: Add python-capturer.
ng0 [Sat, 21 Oct 2017 22:56:09 +0000 (22:56 +0000)]
gnu: Add python-capturer.

* gnu/packages/python.scm (python-capturer, python2-capturer): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6 years agognu: Add python-humanfriendly.
ng0 [Sat, 21 Oct 2017 22:46:06 +0000 (22:46 +0000)]
gnu: Add python-humanfriendly.

* gnu/packages/python.scm (python-humanfriendly, python2-humanfriendly):
New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
6 years agochallenge: Display an overall summary.
Ludovic Courtès [Thu, 26 Oct 2017 04:00:17 +0000 (21:00 -0700)]
challenge: Display an overall summary.

* guix/scripts/challenge.scm (summarize-report-list): New procedure.
(guix-challenge): Use it.
* doc/guix.texi (Invoking guix challenge): Adjust command output in
example.

6 years agosubstitute: Don't send more than 1000 requests in a row.
Ludovic Courtès [Thu, 26 Oct 2017 03:57:06 +0000 (20:57 -0700)]
substitute: Don't send more than 1000 requests in a row.

Fixes <https://bugs.gnu.org/28731>.
Reported by Jan Nieuwenhuizen <janneke@gnu.org>.

* guix/scripts/substitute.scm (at-most): New procedure.
(http-multiple-get): Use it to send at most 1000 requests at once.

6 years agoguix package: '--list-available' does not show superseded packages.
Ludovic Courtès [Thu, 26 Oct 2017 03:35:43 +0000 (20:35 -0700)]
guix package: '--list-available' does not show superseded packages.

* guix/scripts/package.scm (process-query) <'list-available>: Filter out
P if it matches 'package-superseded'.

6 years agognu: Fix Leo Famulari's copyright statement in (gnu packages calcurse).
Leo Famulari [Wed, 25 Oct 2017 18:45:04 +0000 (14:45 -0400)]
gnu: Fix Leo Famulari's copyright statement in (gnu packages calcurse).

* gnu/packages/calcurse.scm: Fix copyright statement.

6 years agognu: calcurse: Used the "fixed" test-only tzdata for tests.
Leo Famulari [Tue, 24 Oct 2017 20:10:49 +0000 (16:10 -0400)]
gnu: calcurse: Used the "fixed" test-only tzdata for tests.

* gnu/packages/calcurse.scm (calcurse)[inputs]: Remove tzdata and add ...
[native-inputs]: tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.

6 years agognu: parallel: Update to 20171022.
Efraim Flashner [Wed, 25 Oct 2017 18:37:29 +0000 (21:37 +0300)]
gnu: parallel: Update to 20171022.

* gnu/packages/parallel.scm (parallel): Update to 20171022.

6 years agognu: expat: Update replacement to 2.2.4 [security fixes].
Tobias Geerinckx-Rice [Wed, 25 Oct 2017 16:23:44 +0000 (18:23 +0200)]
gnu: expat: Update replacement to 2.2.4 [security fixes].

See 'Changes' in the source distribution for more information about the
fixed security issues.

* gnu/packages/xml.scm (expat)[replacement]: Update to 2.2.4.
(expat-2.2.2): Replace with...
(expat-2.2.4): ...new variable.

6 years agognu: tor: Update to 0.3.1.8.
Tobias Geerinckx-Rice [Wed, 25 Oct 2017 15:28:44 +0000 (17:28 +0200)]
gnu: tor: Update to 0.3.1.8.

* gnu/packages/tor.scm (tor): Update to 0.3.1.8.

6 years agognu: sssd: Add missing word to description.
Tobias Geerinckx-Rice [Wed, 25 Oct 2017 13:32:07 +0000 (15:32 +0200)]
gnu: sssd: Add missing word to description.

* gnu/packages/sssd.scm (sssd)[description]: Fix typo.

6 years agognu: sssd: Update to 1.16.0.
Tobias Geerinckx-Rice [Wed, 25 Oct 2017 13:30:52 +0000 (15:30 +0200)]
gnu: sssd: Update to 1.16.0.

* gnu/packages/sssd.scm (sssd): Update to 1.16.0.

6 years agognu: ding-libs: Update to 0.6.1.
Tobias Geerinckx-Rice [Wed, 25 Oct 2017 13:30:16 +0000 (15:30 +0200)]
gnu: ding-libs: Update to 0.6.1.

* gnu/packages/sssd.scm (ding-libs): Update to 0.6.1.

6 years agognu: r-ff: Remove aarch64-linux from supported-systems.
Efraim Flashner [Wed, 25 Oct 2017 16:04:19 +0000 (19:04 +0300)]
gnu: r-ff: Remove aarch64-linux from supported-systems.

* gnu/packages/cran.scm (r-ff)[supported-systems]: New field.

6 years agognu: go@1.4: Limit supported systems.
Efraim Flashner [Wed, 25 Oct 2017 14:40:33 +0000 (17:40 +0300)]
gnu: go@1.4: Limit supported systems.

* gnu/packages/golang.scm (go@1.4)[supported-systems]: New field,
Limit supported systems to x86_64-linux, i686-linux and armhf-linux.
(go@1.9)[supported-systems]: New field.

6 years agognu: perl-moox-file-configdir: Fix source URL.
Ricardo Wurmus [Wed, 25 Oct 2017 14:40:09 +0000 (16:40 +0200)]
gnu: perl-moox-file-configdir: Fix source URL.

* gnu/packages/perl.scm (perl-moox-file-configdir)[source]: Fix typo in source
URL.

6 years agognu: Add r-forcats.
Kyle Meyer [Tue, 24 Oct 2017 22:21:16 +0000 (18:21 -0400)]
gnu: Add r-forcats.

* gnu/packages/statistics.scm (r-forcats): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add sqlite-with-fts3.
Ricardo Wurmus [Wed, 25 Oct 2017 12:58:28 +0000 (14:58 +0200)]
gnu: Add sqlite-with-fts3.

* gnu/packages/databases.scm (sqlite-with-fts3): New variable.

Co-authored-by: Pierre Langlois <pierre.langlois@gmx.com>
6 years agognu: Add crypto++.
Pierre Langlois [Sat, 18 Feb 2017 18:01:13 +0000 (18:01 +0000)]
gnu: Add crypto++.

* gnu/packages/crypto.scm (crypto++): New variable.
* gnu/packages/patches/crypto++-fix-dos-in-asn.1-decoders.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add libechonest.
Pierre Langlois [Sat, 18 Feb 2017 18:00:52 +0000 (18:00 +0000)]
gnu: Add libechonest.

* gnu/packages/music.scm (libechonest): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add qjson.
Pierre Langlois [Sat, 18 Feb 2017 18:00:16 +0000 (18:00 +0000)]
gnu: Add qjson.

* gnu/packages/web.scm (qjson): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add parcimonie.
Petter [Wed, 25 Oct 2017 08:08:55 +0000 (10:08 +0200)]
gnu: Add parcimonie.

* gnu/packages/gnupg.scm (parcimonie): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-browser-open.
Petter [Wed, 25 Oct 2017 06:54:04 +0000 (08:54 +0200)]
gnu: Add perl-browser-open.

* gnu/packages/perl.scm (perl-browser-open): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-b-keywords.
Petter [Wed, 25 Oct 2017 06:53:26 +0000 (08:53 +0200)]
gnu: Add perl-b-keywords.

* gnu/packages/perl.scm (perl-b-keywords): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-carp-always.
Petter [Wed, 25 Oct 2017 06:53:03 +0000 (08:53 +0200)]
gnu: Add perl-carp-always.

* gnu/packages/perl.scm (perl-carp-always): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-net-dbus-glib.
Petter [Wed, 25 Oct 2017 06:30:58 +0000 (08:30 +0200)]
gnu: Add perl-net-dbus-glib.

* gnu/packages/glib.scm (perl-net-dbus-glib): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-net-dbus.
Petter [Wed, 25 Oct 2017 06:26:14 +0000 (08:26 +0200)]
gnu: Add perl-net-dbus.

* gnu/packages/glib.scm (perl-net-dbus): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: dealii: Update to 8.5.1.
Eric Bavier [Wed, 25 Oct 2017 00:19:55 +0000 (19:19 -0500)]
gnu: dealii: Update to 8.5.1.

Fixes compilation with boost@1.64.0.

* gnu/packages/maths.scm (dealii): Update to 8.5.1.

6 years agognu: p4est: Update to 2.0.
Eric Bavier [Wed, 25 Oct 2017 00:19:13 +0000 (19:19 -0500)]
gnu: p4est: Update to 2.0.

* gnu/packages/maths.scm (p4est): Update to 2.0.

6 years agognu: libhilbert: Remove package.
Eric Bavier [Tue, 24 Oct 2017 20:58:30 +0000 (15:58 -0500)]
gnu: libhilbert: Remove package.

This package's source and webpage has disappeared for some time, and upstream
projects (e.g. libmesh) seem to be bundling it, so we remove it for now.

* gnu/packages/maths.scm (libhilbert): Remove variable.

6 years agognu: slepc: Update to 3.8.0.
Eric Bavier [Tue, 24 Oct 2017 20:45:09 +0000 (15:45 -0500)]
gnu: slepc: Update to 3.8.0.

* gnu/packages/maths.scm (slepc): Update to 3.8.0.

6 years agognu: petsc: Update to 3.8.0.
Eric Bavier [Tue, 24 Oct 2017 20:33:38 +0000 (15:33 -0500)]
gnu: petsc: Update to 3.8.0.

* gnu/packages/maths.scm (petsc): Update to 3.8.0
[native-inputs]: Remove perl, which is no longer needed.

6 years agognu: bwa: Update to 0.7.17.
Ben Woodcroft [Tue, 24 Oct 2017 23:27:45 +0000 (09:27 +1000)]
gnu: bwa: Update to 0.7.17.

* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.17.

6 years agognu: bwa: Change source URL to GitHub.
Ben Woodcroft [Tue, 24 Oct 2017 23:25:05 +0000 (09:25 +1000)]
gnu: bwa: Change source URL to GitHub.

* gnu/packages/bioinformatics.scm (bwa)[source]: Change source URL to
GitHub.

6 years agognu: Add perl-moox-options.
Petter [Tue, 24 Oct 2017 21:29:50 +0000 (23:29 +0200)]
gnu: Add perl-moox-options.

* gnu/packages/perl.scm (perl-moox-options): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: perl-getopt-long-descriptive: Update to 0.100.
Ricardo Wurmus [Tue, 24 Oct 2017 21:29:00 +0000 (23:29 +0200)]
gnu: perl-getopt-long-descriptive: Update to 0.100.

* gnu/packages/perl.scm (perl-getopt-long-descriptive): Update to 0.100.
[native-inputs]: Add perl-cpan-meta-check.

6 years agognu: Add perl-moox-configfromfile.
Petter [Tue, 24 Oct 2017 21:09:42 +0000 (23:09 +0200)]
gnu: Add perl-moox-configfromfile.

* gnu/packages/perl.scm (perl-moox-configfromfile): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-moox-file-configdir.
Petter [Tue, 24 Oct 2017 21:06:27 +0000 (23:06 +0200)]
gnu: Add perl-moox-file-configdir.

* gnu/packages/perl.scm (perl-moox-file-configdir): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-moox-cmd.
Petter [Tue, 24 Oct 2017 21:01:43 +0000 (23:01 +0200)]
gnu: Add perl-moox-cmd.

* gnu/packages/perl.scm (perl-moox-cmd): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: perl-list-moreutils: Update to 0.426.
Ricardo Wurmus [Tue, 24 Oct 2017 20:59:52 +0000 (22:59 +0200)]
gnu: perl-list-moreutils: Update to 0.426.

* gnu/packages/perl.scm (perl-list-moreutils): Update to 0.426.
[arguments]: Work around dotless @INC problem.
[native-inputs]: Add perl-test-leaktrace; remove perl-inc-latest and
perl-test-writevariants.
[propagated-inputs]: Add perl-list-moreutils-xs.

6 years agognu: Add perl-list-moreutils-xs.
Ricardo Wurmus [Tue, 24 Oct 2017 20:58:42 +0000 (22:58 +0200)]
gnu: Add perl-list-moreutils-xs.

* gnu/packages/perl.scm (perl-list-moreutils-xs): New variable.

6 years agognu: Add perl-libintl-perl.
Petter [Tue, 24 Oct 2017 20:34:47 +0000 (22:34 +0200)]
gnu: Add perl-libintl-perl.

* gnu/packages/perl.scm (perl-libintl-perl): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-file-configdir.
Petter [Tue, 24 Oct 2017 20:16:18 +0000 (22:16 +0200)]
gnu: Add perl-file-configdir.

* gnu/packages/perl.scm (perl-file-configdir): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-data-record.
Petter [Tue, 24 Oct 2017 19:15:18 +0000 (21:15 +0200)]
gnu: Add perl-data-record.

* gnu/packages/perl.scm (perl-data-record): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-data-printer.
Petter [Tue, 24 Oct 2017 19:09:26 +0000 (21:09 +0200)]
gnu: Add perl-data-printer.

* gnu/packages/perl.scm (perl-data-printer): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-clone-pp.
Petter [Tue, 24 Oct 2017 18:56:28 +0000 (20:56 +0200)]
gnu: Add perl-clone-pp.

* gnu/packages/perl.scm (perl-clone-pp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-data.
Petter [Tue, 24 Oct 2017 18:48:30 +0000 (20:48 +0200)]
gnu: Add perl-data.

* gnu/packages/perl.scm (perl-data): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: gnurl: Update to 7.56.1.
ng0 [Tue, 24 Oct 2017 20:43:07 +0000 (20:43 +0000)]
gnu: gnurl: Update to 7.56.1.

* gnu/packages/gnunet.scm (gnurl): Update to 7.56.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
6 years agognu: screen: Update to 4.6.2.
Efraim Flashner [Tue, 24 Oct 2017 18:26:00 +0000 (21:26 +0300)]
gnu: screen: Update to 4.6.2.

* gnu/packages/screen.scm (screen): Update to 4.6.2.

6 years agognu: mupdf: Fix CVE-2017-{14685,14686,14687}.
Leo Famulari [Tue, 24 Oct 2017 17:43:55 +0000 (13:43 -0400)]
gnu: mupdf: Fix CVE-2017-{14685,14686,14687}.

* gnu/packages/patches/mupdf-CVE-2017-14685.patch,
gnu/packages/patches/mupdf-CVE-2017-14686.patch,
gnu/packages/patches/mupdf-CVE-2017-14687.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.

6 years agognu: icu4c: Fix CVE-2017-14952.
Leo Famulari [Tue, 24 Oct 2017 16:25:45 +0000 (12:25 -0400)]
gnu: icu4c: Fix CVE-2017-14952.

* gnu/packages/patches/icu4c-CVE-2017-14952.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c)[replacement]: New field.
(icu4c-fixed): New variable.

6 years agognu: syncthing: Split into two outputs.
Leo Famulari [Tue, 24 Oct 2017 15:56:37 +0000 (11:56 -0400)]
gnu: syncthing: Split into two outputs.

* gnu/packages/syncthing.scm (syncthing)[outputs]: New field.
[arguments]: Change the 'install' and 'install-docs' phases to install to the
two outputs.

6 years agognu: syncthing: Use install-source? to disable installing the source code.
Leo Famulari [Tue, 24 Oct 2017 16:18:24 +0000 (12:18 -0400)]
gnu: syncthing: Use install-source? to disable installing the source code.

* gnu/packages/syncthing.scm (syncthing): Set #:install-source? #f
instead of deleting the install-source phase.

6 years agobuild-system/go: Parameterize installing the source code.
Leo Famulari [Tue, 24 Oct 2017 16:17:32 +0000 (12:17 -0400)]
build-system/go: Parameterize installing the source code.

* guix/build-system/go.scm (go-build): Add install-source? key.
* guix/build/go-build-system.scm (install-source): Check if
install-source? is true.

6 years agobuild-system/go: Strip the Go binaries with the native tool.
Leo Famulari [Sat, 21 Oct 2017 17:00:27 +0000 (13:00 -0400)]
build-system/go: Strip the Go binaries with the native tool.

* guix/build/go-build-system.scm (build): Tell the Go linker to strip some
symbol tables and debugging information.

6 years agognu: Add perl-types-path-tiny.
Petter [Tue, 24 Oct 2017 16:26:57 +0000 (18:26 +0200)]
gnu: Add perl-types-path-tiny.

* gnu/packages/perl.scm (perl-types-path-tiny): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-type-tiny-xs.
Petter [Tue, 24 Oct 2017 16:25:49 +0000 (18:25 +0200)]
gnu: Add perl-type-tiny-xs.

* gnu/packages/perl.scm (perl-type-tiny-xs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-test-taint.
Petter [Tue, 24 Oct 2017 16:25:19 +0000 (18:25 +0200)]
gnu: Add perl-test-taint.

* gnu/packages/perl.scm (perl-test-taint): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-term-size-any.
Petter [Tue, 24 Oct 2017 16:24:49 +0000 (18:24 +0200)]
gnu: Add perl-term-size-any.

* gnu/packages/perl.scm (perl-term-size-any): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-term-size-perl.
Petter [Tue, 24 Oct 2017 16:24:17 +0000 (18:24 +0200)]
gnu: Add perl-term-size-perl.

* gnu/packages/perl.scm (perl-term-size-perl): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
6 years agognu: Add perl-devel-hide.
Petter [Tue, 24 Oct 2017 16:37:33 +0000 (18:37 +0200)]
gnu: Add perl-devel-hide.

* gnu/packages/perl.scm (perl-devel-hide): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>