Ricardo Wurmus [Sat, 13 Jun 2020 21:47:14 +0000 (23:47 +0200)]
gnu: alsa-modular-synth: Add patch to fix vocoder build error.
* gnu/packages/patches/alsa-modular-synth-fix-vocoder.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/audio.scm (alsa-modular-synth)[source]: Add it.
Marius Bakke [Sat, 13 Jun 2020 17:23:27 +0000 (19:23 +0200)]
gnu: check@0.12: Do not inherit replacements from check.
* gnu/packages/check.scm (check-0.12): Use INHERIT instead of PACKAGE/INHERIT.
Marius Bakke [Sat, 13 Jun 2020 17:00:42 +0000 (19:00 +0200)]
gnu: libnet: Update home page.
* gnu/packages/networking.scm (libnet)[home-page]: Adjust to current, as
referred to from the previous.
Marius Bakke [Sat, 13 Jun 2020 16:58:28 +0000 (18:58 +0200)]
gnu: libnet: Update to 1.2.
* gnu/packages/networking.scm (libnet): Update to 1.2.
[source]: Switch to URL-FETCH.
[arguments]: Remove chdir phase.
[native-inputs]: Remove AUTOCONF, AUTOMAKE, and LIBTOOL. Add PERL.
Marius Bakke [Thu, 11 Jun 2020 22:00:03 +0000 (00:00 +0200)]
gnu: jucipp: Build with Clang 10.
* gnu/packages/text-editors.scm (jucipp)[inputs]: Change from CLANG to CLANG-10.
Marius Bakke [Tue, 9 Jun 2020 12:05:09 +0000 (14:05 +0200)]
gnu: ghc-regex-pcre-builtin: Update home page.
* gnu/packages/haskell-xyz.scm (ghc-regex-pcre-builtin)[home-page]: Set to the
correct home page, not the alternative 'ghc-regex-pcre' library.
Marius Bakke [Mon, 25 May 2020 11:29:06 +0000 (13:29 +0200)]
gnu: perl-net-dns-resolver-programmable: Remove "v" prefix from version string.
* gnu/packages/networking.scm (perl-net-dns-resolver-programmable)[version]:
Remove "v" prefix.
[source](uri): Adjust accordingly.
Marius Bakke [Sat, 13 Jun 2020 20:52:25 +0000 (22:52 +0200)]
Merge branch 'staging'
Ricardo Wurmus [Sat, 13 Jun 2020 20:35:29 +0000 (22:35 +0200)]
gnu: Add r-pcatools.
* gnu/packages/bioconductor.scm (r-pcatools): New variable.
Ricardo Wurmus [Sat, 13 Jun 2020 18:03:42 +0000 (20:03 +0200)]
gnu: libnode: Delete unused phase.
This is a follow-up to commit
bb310a1976198eacdc67e0712e19735cd656b21d.
* gnu/packages/node.scm (libnode)[arguments]: Delete phase
"patch-npm-shebang".
Ekaitz Zarraga [Fri, 12 Jun 2020 21:41:18 +0000 (23:41 +0200)]
gnu: Add meshlab.
* gnu/packages/engineering.scm (meshlab): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Ludovic Courtès [Fri, 12 Jun 2020 20:55:52 +0000 (22:55 +0200)]
gnu: perf: Set 'CC'.
* gnu/packages/linux.scm (perf)[arguments]: Add "CC=gcc" to #:make-flags.
This fixes a (harmless?) error message during the 'configure' phase.
Ludovic Courtès [Fri, 12 Jun 2020 20:53:22 +0000 (22:53 +0200)]
gnu: perf: Restore use of dependencies.
* gnu/packages/linux.scm (perf)[arguments]: Remove C_INCLUDE_PATH from
#:make-flags. It is no longer needed since the switch to C_INCLUDE_PATH
in
2073b55e6b964cb8ca15e8c74cb32dac00f05f0d and would prevent
dependencies from being found.
Danny Milosavljevic [Sat, 13 Jun 2020 15:16:03 +0000 (17:16 +0200)]
gnu: guile-sqlite3: Update to 0.1.2.
* gnu/packages/guile.scm (guile-sqlite3): Update to 0.1.2.
Ricardo Wurmus [Sat, 13 Jun 2020 15:01:09 +0000 (17:01 +0200)]
Revert "gnu: node: Build shared library."
This reverts commit
f9311eaa7cb7849e9b17162c93b874c74d8fcbbd.
Adding "--shared" replaces the executable with the shared library, breaking
all users of the nodejs executable.
Ricardo Wurmus [Sat, 13 Jun 2020 15:00:30 +0000 (17:00 +0200)]
gnu: r-v8: Use libnode instead of node.
* gnu/packages/cran.scm (r-v8)[inputs]: Replace node with libnode.
Ricardo Wurmus [Sat, 13 Jun 2020 15:00:15 +0000 (17:00 +0200)]
gnu: Add libnode.
* gnu/packages/node.scm (libnode): New variable.
Mathieu Othacehe [Sat, 13 Jun 2020 14:55:12 +0000 (16:55 +0200)]
image: Remove 'maybe-with-target'.
* gnu/system/image.scm (maybe-with-target): Remove,
(system-image): adapt accordingly.
Mathieu Othacehe [Sat, 13 Jun 2020 13:05:22 +0000 (15:05 +0200)]
install: final: Add some logging.
* gnu/installer/final.scm (umount-cow-store): Add some logging.
Mathieu Othacehe [Sat, 13 Jun 2020 12:01:18 +0000 (14:01 +0200)]
image: Add 'target' support.
* gnu/image.scm (<image>)[target]: New field,
(image-target): new public method.
* gnu/system/image.scm (hurd-disk-image): Set "i586-pc-gnu" as image 'target'
field,
(maybe-with-target): new procedure,
(system-image): honor image 'target' field using the above procedure.
Jan (janneke) Nieuwenhuizen [Thu, 11 Jun 2020 20:52:12 +0000 (22:52 +0200)]
image: Make 'find-image' non-monadic.
* gnu/system/image.scm (find-image): Make non-monadic. Add 'target'
parameter.
* gnu/tests/install.scm (run-install): Update caller,
passing (%current-target-system).
* guix/scripts/system.scm (perform-action): Likewise.
Christopher Baines [Sun, 7 Jun 2020 20:20:08 +0000 (21:20 +0100)]
gnome: gnome-desktop: Add bubblewrap as an input.
This is expected to be available, oddly as libseccomp is available. These
changes fix thumbnails for Nautilus.
* gnu/packages/gnome.scm (gnome-desktop)[arguments]: Add 'patch-bubblewrap
phase.
[inputs]: Add bubblewrap.
Michael Rohleder [Sat, 13 Jun 2020 06:28:11 +0000 (14:28 +0800)]
gnu: emacs-debbugs: Update to 0.23.
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.23.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
Jan (janneke) Nieuwenhuizen [Sat, 13 Jun 2020 08:04:51 +0000 (10:04 +0200)]
services: hurd: Remove deprecated 'hurd-getty-service' wrapper.
* gnu/services/hurd.scm (hurd-getty-service): Remove.
Jan (janneke) Nieuwenhuizen [Wed, 27 May 2020 07:13:19 +0000 (09:13 +0200)]
system: hurd: Remove 'cross-hurd-image' hack.
The initial
guix build -f gnu/system/hurd.scm
hack has been superseded by regular guix system (cross) build.
* gnu/system/hurd.scm (compile-manifest, cross-hurd-image): Remove.
Jan (janneke) Nieuwenhuizen [Thu, 7 May 2020 17:14:07 +0000 (19:14 +0200)]
system: bare-hurd.tmpl: Add openssh-sans-x client and service.
* gnu/system/examples/bare-hurd.tmpl (%hurd-os)[packages]: Add openssh-sans-x.
[services]: Add openssh-service. Add example usage.
Ricardo Wurmus [Fri, 12 Jun 2020 23:13:00 +0000 (01:13 +0200)]
gnu: r-mzr: Update to 2.22.0.
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.22.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:06:00 +0000 (01:06 +0200)]
gnu: r-biodist: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.60.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:05:55 +0000 (01:05 +0200)]
gnu: r-biocworkflowtools: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.14.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:05:51 +0000 (01:05 +0200)]
gnu: r-biocset: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.1.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:05:46 +0000 (01:05 +0200)]
gnu: r-biocpkgtools: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.6.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:05:37 +0000 (01:05 +0200)]
gnu: r-biocor: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.12.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:05:32 +0000 (01:05 +0200)]
gnu: r-bioconcotk: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.8.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:05:26 +0000 (01:05 +0200)]
gnu: r-multiassayexperiment: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.14.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:05:21 +0000 (01:05 +0200)]
gnu: r-experimenthub: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:05:14 +0000 (01:05 +0200)]
gnu: r-biocgraph: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.50.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:05:10 +0000 (01:05 +0200)]
gnu: r-bioccasestudies: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-bioccasestudies): Update to 1.50.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:05:07 +0000 (01:05 +0200)]
gnu: r-ebarrays: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.52.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:05:03 +0000 (01:05 +0200)]
gnu: r-reactomepa: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.32.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:04:59 +0000 (01:04 +0200)]
gnu: r-graphite: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.34.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:04:54 +0000 (01:04 +0200)]
gnu: r-biobroom: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.20.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:04:49 +0000 (01:04 +0200)]
gnu: r-bioassayr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.26.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:04:40 +0000 (01:04 +0200)]
gnu: r-chemminer: Update to 3.40.0.
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.40.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:04:29 +0000 (01:04 +0200)]
gnu: r-bigpint: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.4.0.
[propagated-inputs]: Add r-delayedarray and r-summarizedexperiment.
Ricardo Wurmus [Fri, 12 Jun 2020 23:04:17 +0000 (01:04 +0200)]
gnu: r-bigmemoryextras: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.36.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:04:12 +0000 (01:04 +0200)]
gnu: r-biggr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.24.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:04:07 +0000 (01:04 +0200)]
gnu: r-hyperdraw: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.40.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:04:03 +0000 (01:04 +0200)]
gnu: r-hypergraph: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.60.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:03:59 +0000 (01:03 +0200)]
gnu: r-rsbml: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.46.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:03:54 +0000 (01:03 +0200)]
gnu: r-bifet: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.8.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:03:50 +0000 (01:03 +0200)]
gnu: r-bicare: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.46.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:03:46 +0000 (01:03 +0200)]
gnu: r-bhc: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.40.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:03:42 +0000 (01:03 +0200)]
gnu: r-bgx: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.54.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:03:39 +0000 (01:03 +0200)]
gnu: r-bgmix: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.48.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:03:35 +0000 (01:03 +0200)]
gnu: r-unifiedwmwqpcr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.24.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:03:32 +0000 (01:03 +0200)]
gnu: r-htqpcr: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.42.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:03:28 +0000 (01:03 +0200)]
gnu: r-variancepartition: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:03:23 +0000 (01:03 +0200)]
gnu: r-variantfiltering: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.24.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:03:20 +0000 (01:03 +0200)]
gnu: r-timeseriesexperiment: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.6.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:03:11 +0000 (01:03 +0200)]
gnu: r-wavcluster: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.22.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:03:07 +0000 (01:03 +0200)]
gnu: r-reqon: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.34.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:03:03 +0000 (01:03 +0200)]
gnu: r-seqbias: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.36.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:02:59 +0000 (01:02 +0200)]
gnu: r-bigmelon: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.14.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:02:56 +0000 (01:02 +0200)]
gnu: r-gdsfmt: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:02:50 +0000 (01:02 +0200)]
gnu: r-watermelon: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.32.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:02:45 +0000 (01:02 +0200)]
gnu: r-roc: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.64.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:02:34 +0000 (01:02 +0200)]
gnu: r-genie3: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.10.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:02:30 +0000 (01:02 +0200)]
gnu: r-cicero: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:02:26 +0000 (01:02 +0200)]
gnu: r-rcistarget: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.8.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:02:20 +0000 (01:02 +0200)]
gnu: r-depecher: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.4.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:02:17 +0000 (01:02 +0200)]
gnu: r-mixomics: Update to 6.12.1.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.1.
Ricardo Wurmus [Fri, 12 Jun 2020 23:02:13 +0000 (01:02 +0200)]
gnu: r-flowsom: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.20.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:01:58 +0000 (01:01 +0200)]
gnu: r-cytoml: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.0.
[propagated-inputs]: Remove r-ncdfflow; add r-rcpparmadillo, r-rhdf5lib, and
r-tibble.
Ricardo Wurmus [Fri, 12 Jun 2020 23:01:53 +0000 (01:01 +0200)]
gnu: r-opencyto: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.0.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:01:47 +0000 (01:01 +0200)]
gnu: r-flowstats: Update to 4.0.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.0.0.
Ricardo Wurmus [Fri, 12 Jun 2020 23:01:29 +0000 (01:01 +0200)]
gnu: r-flowworkspace: Update to 4.0.3.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.0.3.
[propagated-inputs]: Remove r-flowviz, r-gridextra, and r-rcolorbrewer; add
r-ggplot2, r-rcpparmadillo, r-rhdf5lib, and r-xml.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:00:47 +0000 (01:00 +0200)]
gnu: r-rprotobuflib: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.0.0.
[arguments]: Adjust phase "unpack-bundled-sources".
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:00:35 +0000 (01:00 +0200)]
gnu: r-flowclust: Update to 3.26.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.26.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:00:27 +0000 (01:00 +0200)]
gnu: r-flowviz: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.52.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:00:20 +0000 (01:00 +0200)]
gnu: r-ggcyto: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.16.0.
[propagated-inputs]: Add r-hexbin.
Ricardo Wurmus [Fri, 12 Jun 2020 23:00:15 +0000 (01:00 +0200)]
gnu: r-ncdfflow: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.34.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 23:00:10 +0000 (01:00 +0200)]
gnu: r-flowmeans: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.48.0.
Ricardo Wurmus [Fri, 12 Jun 2020 22:59:54 +0000 (00:59 +0200)]
gnu: r-flowcore: Update to 2.0.1.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.0.1.
[propagated-inputs]: Add r-rcpparmadillo and r-rprotobuflib.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 22:59:35 +0000 (00:59 +0200)]
gnu: r-cytolib: Update to 2.0.3.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.0.3.
[inputs]: Add zlib.
[propagated-inputs]: Add r-bh, r-rcpp, r-rcpparmadillo, r-rcppparallel,
r-rhdf5lib, and r-rprotobuflib.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 22:59:30 +0000 (00:59 +0200)]
gnu: r-consensusclusterplus: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.52.0.
Ricardo Wurmus [Fri, 12 Jun 2020 22:59:18 +0000 (00:59 +0200)]
gnu: r-flowutils: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.52.0.
Ricardo Wurmus [Fri, 12 Jun 2020 22:59:06 +0000 (00:59 +0200)]
gnu: r-rsubread: Update to 2.2.2.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.2.
[propagated-inputs]: Add r-matrix.
Ricardo Wurmus [Fri, 12 Jun 2020 22:58:58 +0000 (00:58 +0200)]
gnu: r-annotatr: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.14.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 22:58:52 +0000 (00:58 +0200)]
gnu: r-biosigner: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.16.0.
Ricardo Wurmus [Fri, 12 Jun 2020 22:58:48 +0000 (00:58 +0200)]
gnu: r-ropls: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.20.0.
Ricardo Wurmus [Fri, 12 Jun 2020 22:58:44 +0000 (00:58 +0200)]
gnu: r-multidataset: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.16.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 22:58:39 +0000 (00:58 +0200)]
gnu: r-birta: Update to 1.31.0.
* gnu/packages/bioconductor.scm (r-birta): Update to 1.31.0.
Ricardo Wurmus [Fri, 12 Jun 2020 22:58:36 +0000 (00:58 +0200)]
gnu: r-birewire: Update to 3.20.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.20.0.
Ricardo Wurmus [Fri, 12 Jun 2020 22:58:32 +0000 (00:58 +0200)]
gnu: r-rqc: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.22.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 22:58:27 +0000 (00:58 +0200)]
gnu: r-quasr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.28.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 22:58:23 +0000 (00:58 +0200)]
gnu: r-rhisat2: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.4.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 22:58:14 +0000 (00:58 +0200)]
gnu: r-sgseq: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.22.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 22:58:10 +0000 (00:58 +0200)]
gnu: r-rbowtie: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.0.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Fri, 12 Jun 2020 22:58:05 +0000 (00:58 +0200)]
gnu: r-iclusterplus: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.24.0.
Ricardo Wurmus [Fri, 12 Jun 2020 22:58:01 +0000 (00:58 +0200)]
gnu: r-biocfilecache: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.0.
[native-inputs]: Add r-knitr.
HCoop / jackhill / guix / guix.git / log