jackhill/guix/guix.git
5 years agognu: filezilla: Update to 3.37.4.
Tobias Geerinckx-Rice [Fri, 5 Oct 2018 17:11:28 +0000 (19:11 +0200)]
gnu: filezilla: Update to 3.37.4.

* gnu/packages/ftp.scm (filezilla): Update to 3.37.4.

5 years agognu: libfilezilla: Update to 0.14.0.
Tobias Geerinckx-Rice [Fri, 5 Oct 2018 13:22:55 +0000 (15:22 +0200)]
gnu: libfilezilla: Update to 0.14.0.

* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0.

5 years agognu: samtools-0.1: Adjust to match changes in samtools.
Ricardo Wurmus [Thu, 4 Oct 2018 20:49:49 +0000 (22:49 +0200)]
gnu: samtools-0.1: Adjust to match changes in samtools.

* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Override make
flags.

5 years agognu: deeptools: Update to 3.1.2.
Ricardo Wurmus [Thu, 4 Oct 2018 19:34:16 +0000 (21:34 +0200)]
gnu: deeptools: Update to 3.1.2.

* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2.
[source]: Fetch from git.
[arguments]: Delete reset-gzip-timestamps phase.
[inputs]: Add python-plotly.

5 years agognu: python-pysam: Update to 0.15.1.
Ricardo Wurmus [Thu, 4 Oct 2018 19:32:06 +0000 (21:32 +0200)]
gnu: python-pysam: Update to 0.15.1.

* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.15.1.
[source]: Fetch from git.
[arguments]: Delete tests requiring internet access; use "invoke".
[inputs]: Add curl.

5 years agognu: python-plotly: Add python-pandas to inputs.
Ricardo Wurmus [Thu, 4 Oct 2018 19:31:24 +0000 (21:31 +0200)]
gnu: python-plotly: Add python-pandas to inputs.

* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add
python-pandas.

5 years agognu: bcftools: Update to 1.9.
Ricardo Wurmus [Thu, 4 Oct 2018 19:18:34 +0000 (21:18 +0200)]
gnu: bcftools: Update to 1.9.

* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9.
[arguments]: Remove obsolete make flags.

5 years agognu: samtools: Update to 1.9.
Ricardo Wurmus [Thu, 4 Oct 2018 19:15:47 +0000 (21:15 +0200)]
gnu: samtools: Update to 1.9.

* gnu/packages/bioinformatics.scm (samtools): Update to 1.9.
[origin]: Remove bundled htslib sources.
[arguments]: Remove obsolete make-flags.

5 years agognu: htslib: Update to 1.9.
Ricardo Wurmus [Thu, 4 Oct 2018 19:14:43 +0000 (21:14 +0200)]
gnu: htslib: Update to 1.9.

* gnu/packages/bioinformatics.scm (htslib): Update to 1.9.

5 years agognu: icecat: Add fixes from mozilla-esr60 [security fixes].
Mark H Weaver [Thu, 4 Oct 2018 23:24:39 +0000 (19:24 -0400)]
gnu: icecat: Add fixes from mozilla-esr60 [security fixes].

Includes fixes for CVE-2018-12386 and CVE-2018-12387.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr60 repository.

5 years agognu: linux-libre: Update to 4.18.12.
Mark H Weaver [Fri, 5 Oct 2018 00:35:38 +0000 (20:35 -0400)]
gnu: linux-libre: Update to 4.18.12.

* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.12.
(%linux-libre-hash): Update hash.

5 years agognu: linux-libre@4.14: Update to 4.14.74.
Mark H Weaver [Fri, 5 Oct 2018 00:34:50 +0000 (20:34 -0400)]
gnu: linux-libre@4.14: Update to 4.14.74.

* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.74.
(%linux-libre-4.14-hash): Update hash.

5 years agognu: linux-libre@4.9: Update to 4.9.131.
Mark H Weaver [Fri, 5 Oct 2018 00:34:08 +0000 (20:34 -0400)]
gnu: linux-libre@4.9: Update to 4.9.131.

* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.131.

5 years agognu: petsc-openmpi: Configure with support for MUMPS solver.
Paul Garlick [Wed, 26 Sep 2018 11:59:54 +0000 (12:59 +0100)]
gnu: petsc-openmpi: Configure with support for MUMPS solver.

* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis,
mumps-openmpi, scalapack and pt-scotch.
[arguments]: Add "--with-PACKAGENAME=1" flags.  Move 'mpi-setup' phase
ahead of 'configure' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
5 years agognu: hiawatha: Set sane run-time directory defaults.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 17:52:03 +0000 (19:52 +0200)]
gnu: hiawatha: Set sane run-time directory defaults.

* gnu/packages/web.scm (hiawatha)[arguments]: Set sane default
directories. Replace the 'remove-empty-dirs' phase with a
'install-no-empty-directories' one.

5 years agognu: hwloc: Update to 2.0.2.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 19:26:38 +0000 (21:26 +0200)]
gnu: hwloc: Update to 2.0.2.

* gnu/packages/mpi.scm (hwloc): Update to 2.0.2.

5 years agognu: Add nsd.
Tobias Geerinckx-Rice [Wed, 7 Mar 2018 15:54:43 +0000 (16:54 +0100)]
gnu: Add nsd.

* gnu/packages/dns.scm (nsd): New public variable.

5 years agognu: guile-next: Update to commit 6f3357b0df64c4be17e72079864c09a542f1c779.
David Thompson [Thu, 4 Oct 2018 16:09:55 +0000 (12:09 -0400)]
gnu: guile-next: Update to commit 6f3357b0df64c4be17e72079864c09a542f1c779.

* gnu/packages/guile.scm (guile-next): Update to commit
6f3357b0df64c4be17e72079864c09a542f1c779.

5 years agognu: guile-next: Add the correct native search paths.
David Thompson [Thu, 4 Oct 2018 15:05:06 +0000 (11:05 -0400)]
gnu: guile-next: Add the correct native search paths.

* gnu/packages/guile.scm (guile-next): Add native search paths for version 3.0.

5 years agognu: hiawatha: Support HTTP/2.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 17:04:37 +0000 (19:04 +0200)]
gnu: hiawatha: Support HTTP/2.

* gnu/packages/web.sck (hiawatha)[arguments]: USE_SYSTEM_NGHTTP2
to ENABLE_HTTP2.
[inputs]: Add nghttp2:lib.

5 years agognu: hiawatha: Update to 10.8.3.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 15:26:57 +0000 (17:26 +0200)]
gnu: hiawatha: Update to 10.8.3.

* gnu/packages/web.scm (hiawatha): Update to 10.8.3.
[source]: Also delete bundled copy of nghttp2.
[inputs]: Use mbedtls-for-hiawatha instead of vanilla mbedtls-apache.
* gnu/packages/tls.scm (mbedtls-for-hiawatha): New public variable.

5 years agognu: mbedtls-apache: Update to 2.13.0 [security fixes].
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 14:09:53 +0000 (16:09 +0200)]
gnu: mbedtls-apache: Update to 2.13.0 [security fixes].

* gnu/packages/tls.scm (mbedtls-apache): Update to 2.13.0.
[native-inputs]: Add python.

5 years agognu: geos: Update to 3.7.0.
Arun Isaac [Thu, 4 Oct 2018 14:29:35 +0000 (19:59 +0530)]
gnu: geos: Update to 3.7.0.

* gnu/packages/geo.scm (geos): Update to 3.7.0.

5 years agognu: hexedit: Update to 1.4.2.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 13:42:03 +0000 (15:42 +0200)]
gnu: hexedit: Update to 1.4.2.

* gnu/packages/hexedit.scm (hexedit): Update to 1.4.2.
[source]: Use the author's more up-to-date git repository.
[native-inputs]: Add autoconf and automake.

5 years agognu: html-xml-utils: Update to 7.7.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 13:46:01 +0000 (15:46 +0200)]
gnu: html-xml-utils: Update to 7.7.

* gnu/packages/xml.scm (html-xml-utils): Update to 7.7.

5 years agognu: perl-xml-feed: Update to 0.54.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 13:54:57 +0000 (15:54 +0200)]
gnu: perl-xml-feed: Update to 0.54.

* gnu/packages/xml.scm (perl-xml-feed): Update to 0.54.

5 years agognu: guix: Update to 1d0be47.
Ludovic Courtès [Thu, 4 Oct 2018 09:21:37 +0000 (11:21 +0200)]
gnu: guix: Update to 1d0be47.

* gnu/packages/package-management.scm (guix): Update to 1d0be47.

5 years agoprogress: Generate valid 'download-progress' traces when the size is unknown.
Ludovic Courtès [Thu, 4 Oct 2018 08:24:34 +0000 (10:24 +0200)]
progress: Generate valid 'download-progress' traces when the size is unknown.

Fixes <https://bugs.gnu.org/32895>.
Reported by Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>.

* guix/progress.scm (progress-reporter/trace): In 'stop', make sure SIZE
is an integer.  Previously we'd generate a "@ download-progress" trace
with #f for the 'transferred' number when downloading files whose size
is not known in advance.

5 years agognu: escpr: Update to 1.6.30.
Diego Nicola Barbato [Wed, 3 Oct 2018 20:39:34 +0000 (22:39 +0200)]
gnu: escpr: Update to 1.6.30.

* gnu/packages/cups.scm (escpr): Update to 1.6.30.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: opencv: Update to 3.4.3.
Björn Höfling [Wed, 3 Oct 2018 20:28:19 +0000 (22:28 +0200)]
gnu: opencv: Update to 3.4.3.

[[PGP Signed Part:Good signature from BF286CB6593E5FFD Björn Höfling <bjoern.hoefling@bjoernhoefling.de> (trust undefined) created at 2018-10-03T22:28:20+0200 using DSA]]

* gnu/packages/image-processing.scm (opencv): Update to 3.4.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: r-acclma: Fix uses of @acronym in description.
Ludovic Courtès [Thu, 4 Oct 2018 07:46:43 +0000 (09:46 +0200)]
gnu: r-acclma: Fix uses of @acronym in description.

* gnu/packages/cran.scm (r-acclma)[description]: Fix order of arguments
to @acronym.  The wrong order was causing 'stexi->shtml' to fail (match
error).

5 years agoservices: rottlog: Use command strings in the mcron jobs.
Ludovic Courtès [Wed, 3 Oct 2018 20:44:11 +0000 (22:44 +0200)]
services: rottlog: Use command strings in the mcron jobs.

* gnu/services/admin.scm (default-jobs): Remove the lambda around
"/…/bin/rottlog" to make "herd schedule mcron" more
transparent (otherwise it just says "Lambda function").

5 years agognu: mpv: Update to 0.29.1.
Rutger Helling [Thu, 4 Oct 2018 06:12:39 +0000 (08:12 +0200)]
gnu: mpv: Update to 0.29.1.

* gnu/packages/video.scm (mpv): Update to 0.29.1.

5 years agognu: retroarch: Update to 1.7.5.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 03:56:12 +0000 (05:56 +0200)]
gnu: retroarch: Update to 1.7.5.

* gnu/packages/emulators.scm (retroarch): Update to 1.7.5.

5 years agognu: retroarch: Don't use unstable tarball.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 03:45:02 +0000 (05:45 +0200)]
gnu: retroarch: Don't use unstable tarball.

* gnu/packages/emulators.scm (retroarch)[source]: Use GIT-FETCH and GIT-FILE-NAME.

5 years agognu: ephoto: Fix typos in description.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 03:50:49 +0000 (05:50 +0200)]
gnu: ephoto: Fix typos in description.

* gnu/packages/enlightenment.scm (ephoto)[description]: Fix typos.
Wrap at 80 columns.

5 years agognu: perl-string-copyright: Update to 0.003006.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 03:58:52 +0000 (05:58 +0200)]
gnu: perl-string-copyright: Update to 0.003006.

* gnu/packages/license.scm (perl-string-copyright): Update to 0.003006.

5 years agognu: rpm: Update to 4.14.2.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 04:25:53 +0000 (06:25 +0200)]
gnu: rpm: Update to 4.14.2.

* gnu/packages/package-management.scm (rpm): Update to 4.14.2.
[arguments]: Rename 'set-nspr-search-path' phase to
'set-nss-library-path' and remove CPATH work-around.
Remove obsolete 'fix-rpm-symlinks' phase.
[home-page]: Drop www.

5 years agognu: imapfilter: Update to 2.6.12.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 04:05:31 +0000 (06:05 +0200)]
gnu: imapfilter: Update to 2.6.12.

* gnu/packages/mail.scm (imapfilter): Update to 2.6.12.

5 years agognu: imapfilter: Don't use unstable tarball.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 04:04:02 +0000 (06:04 +0200)]
gnu: imapfilter: Don't use unstable tarball.

* gnu/packages/mail.scm (imapfilter)[source]: Use GIT-FETCH and GIT-FILE-NAME.

5 years agognu: nickle: Update to 2.82.
Tobias Geerinckx-Rice [Thu, 4 Oct 2018 04:12:18 +0000 (06:12 +0200)]
gnu: nickle: Update to 2.82.

* gnu/packages/nickle.scm (nickle): Update to 2.82.

5 years agognu: ddcutil: Update to 0.9.2.
Tobias Geerinckx-Rice [Mon, 1 Oct 2018 21:11:08 +0000 (23:11 +0200)]
gnu: ddcutil: Update to 0.9.2.

* gnu/packages/hardware.scm (ddcutil): Update to 0.9.2.

5 years agognu: ndctl: Return #t from phases.
Tobias Geerinckx-Rice [Mon, 1 Oct 2018 21:29:04 +0000 (23:29 +0200)]
gnu: ndctl: Return #t from phases.

* gnu/packages/disk (ndctl)[arguments]: Rename inaccurately named
'autogen' phase to 'patch-FHS-file-names'. Explicitly return #t.

5 years agognu: disorderfs: Update to 0.5.4.
Tobias Geerinckx-Rice [Mon, 1 Oct 2018 21:22:11 +0000 (23:22 +0200)]
gnu: disorderfs: Update to 0.5.4.

* gnu/packages/file-systems.scm (disorderfs): Update to 0.5.4.

5 years agognu: packagekit: Update to 1.1.11.
Tobias Geerinckx-Rice [Mon, 1 Oct 2018 21:19:45 +0000 (23:19 +0200)]
gnu: packagekit: Update to 1.1.11.

* gnu/packages/freedesktop.scm (packagekit): Update to 1.1.11.

5 years agognu: Add freedroidrpg.
Tobias Geerinckx-Rice [Mon, 24 Sep 2018 18:32:07 +0000 (20:32 +0200)]
gnu: Add freedroidrpg.

* gnu/packages/games.scm (freedroidrpg): New public variable.

5 years agognu: wpa-supplicant-gui: Remove redundant code.
Tobias Geerinckx-Rice [Wed, 3 Oct 2018 22:14:21 +0000 (00:14 +0200)]
gnu: wpa-supplicant-gui: Remove redundant code.

* gnu/packages/admin.scm (wpa-supplicant-gui)[arguments]: Remove
substitution already handled by the build system.

5 years agognu: rubberband: Use HTTPS home page.
Tobias Geerinckx-Rice [Wed, 3 Oct 2018 00:48:01 +0000 (02:48 +0200)]
gnu: rubberband: Use HTTPS home page.

* gnu/packages/audio.scm (rubberband)[home-page]: Use HTTPS.

5 years agognu: Add memtester.
Tobias Geerinckx-Rice [Mon, 1 Oct 2018 14:11:22 +0000 (16:11 +0200)]
gnu: Add memtester.

* gnu/packages/hardware.scm (memtester): New public variable.

5 years agognu: Add memtest86+.
Tobias Geerinckx-Rice [Mon, 1 Oct 2018 10:36:50 +0000 (12:36 +0200)]
gnu: Add memtest86+.

* gnu/packages/hardware.scm (memtest86+): New public variable.

5 years agognu: rtags: Don't use unstable tarball.
Tobias Geerinckx-Rice [Wed, 3 Oct 2018 20:31:03 +0000 (22:31 +0200)]
gnu: rtags: Don't use unstable tarball.

* gnu/packages/code.scm (rtags)[source]: Use GIT-FETCH and GIT-FILE-NAME.

5 years agognu: Add java-fasterxml-jackson-modules-base-mrbean.
Danny Milosavljevic [Thu, 4 Oct 2018 01:02:30 +0000 (03:02 +0200)]
gnu: Add java-fasterxml-jackson-modules-base-mrbean.

* gnu/packages/java.scm (java-fasterxml-jackson-modules-base-mrbean): New
variable.

5 years agognu: Add stlink.
Clément Lassieur [Tue, 2 Oct 2018 14:32:03 +0000 (16:32 +0200)]
gnu: Add stlink.

* gnu/packages/embedded.scm (stlink): New variable.

5 years agognu: Add java-commons-exec.
Danny Milosavljevic [Wed, 3 Oct 2018 21:56:44 +0000 (23:56 +0200)]
gnu: Add java-commons-exec.

* gnu/packages/java.scm (java-commons-exec-1.1): New variable.
(java-commons-exec): New variable.

5 years agognu: azr3: Fix build.
Ricardo Wurmus [Wed, 3 Oct 2018 21:04:32 +0000 (23:04 +0200)]
gnu: azr3: Fix build.

Fixes <https://bugs.gnu.org/32698>.

* gnu/packages/audio.scm (azr3)[arguments]: Add build phase to reset timestamp
of man page source.

5 years agognu: tiled: Update to 1.2.0.
David Thompson [Wed, 3 Oct 2018 18:28:11 +0000 (14:28 -0400)]
gnu: tiled: Update to 1.2.0.

* gnu/packages/game-development.scm (tiled): Update to 1.2.0.

5 years agognu: Add emacs-spaceline.
Nicolas Goaziou [Wed, 26 Sep 2018 21:27:06 +0000 (23:27 +0200)]
gnu: Add emacs-spaceline.

* gnu/packages/emacs.scm (emacs-spaceline): New variable.

5 years agognu: Add emacs-powerline.
Nicolas Goaziou [Wed, 26 Sep 2018 21:25:24 +0000 (23:25 +0200)]
gnu: Add emacs-powerline.

* gnu/packages/emacs.scm (emacs-powerline): New variable.

5 years agognu: Add emacs-all-the-icons.
Nicolas Goaziou [Wed, 26 Sep 2018 21:15:59 +0000 (23:15 +0200)]
gnu: Add emacs-all-the-icons.

* gnu/packages/emacs.scm (emacs-all-the-icons): New variable.

5 years agoquilt: Remove test workarounds.
Eric Bavier [Wed, 3 Oct 2018 15:23:51 +0000 (10:23 -0500)]
quilt: Remove test workarounds.

* gnu/packages/patches/quilt-compat-getopt-fix-second-separator.patch,
gnu/packages/patches/quilt-compat-getopt-fix-option-with-nondigit-param.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/patchutils.scm (quilt)[source]: Use them.
[arguments]: Remove workarounds in 'patch-tests' phase.

5 years agognu: Go 1.11: Update to 1.11.1
Katherine Cox-Buday [Tue, 2 Oct 2018 21:38:52 +0000 (16:38 -0500)]
gnu: Go 1.11: Update to 1.11.1

* gnu/packages/golang.scm (go-1.11): Update to 1.11.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
5 years agognu: emacs-racket-mode: Update to commit b977873.
Christopher Lemmer Webber [Wed, 26 Sep 2018 01:09:32 +0000 (21:09 -0400)]
gnu: emacs-racket-mode: Update to commit b977873.

* gnu/packages/emacs.scm (emacs-racket-mode): Update to commit b977873.

5 years agognu: guile-chickadee: Update to 0.3.0.
宋文武 [Wed, 3 Oct 2018 13:32:49 +0000 (21:32 +0800)]
gnu: guile-chickadee: Update to 0.3.0.

* gnu/packages/game-development.scm (guile-chickadee): Update to 0.3.0.
[arguments]: Add 'patch-godir' phase.

5 years agoquilt: Add diffstat input.
Eric Bavier [Tue, 2 Oct 2018 19:50:45 +0000 (14:50 -0500)]
quilt: Add diffstat input.

* gnu/packages/patchutils.scm (quilt)[inputs]: Add diffstat.
[arguments]: Add it to wrapper.

5 years agoquilt: Install translations.
Eric Bavier [Tue, 2 Oct 2018 19:01:55 +0000 (14:01 -0500)]
quilt: Install translations.

* gnu/packages/patchutils.scm (quilt)[native-inputs]: New field.

5 years agoquilt: Upgrade to 0.65.
Eric Bavier [Tue, 2 Oct 2018 18:53:13 +0000 (13:53 -0500)]
quilt: Upgrade to 0.65.

* gnu/packages/patches/quilt-test-fix-regex.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patchutils.scm (quilt)[version]: Upgrade to 0.65.
[source]: Use patch.
[arguments]: Adjust 'patch-tests' phase for new tests.  Re-enable "mail"
test.

5 years agognu: grammalecte: Update source hash.
Pierre-Antoine Rouby [Thu, 27 Sep 2018 19:01:25 +0000 (21:01 +0200)]
gnu: grammalecte: Update source hash.

The zip file was modified in-place by the maintainers to push fixes to
the "server-side code", as discussed at <https://bugs.gnu.org/32856>.

* gnu/packages/dictionaries.scm (grammalecte): Update source hash.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agodaemon: Remove unused 'Settings' fields.
Ludovic Courtès [Tue, 2 Oct 2018 20:57:13 +0000 (22:57 +0200)]
daemon: Remove unused 'Settings' fields.

* nix/libstore/globals.hh (Settings)[sshSubstituterHosts]
[useSshSubstituter, logServers, enableImportNative]: Remove fields.
* nix/libstore/globals.cc (Settings::Settings, Settings::update): Remove
references to these.

5 years agodaemon: Remove "case hack" for nars.
Ludovic Courtès [Tue, 2 Oct 2018 20:53:47 +0000 (22:53 +0200)]
daemon: Remove "case hack" for nars.

This code has never been of any use in Guix.

* nix/libutil/archive.cc (useCaseHack): Remove.
(parse): Keep only the alternate branch in "if (useCaseHack)".

5 years agognu: guile-cairo: Update to 1.10.0.
Ludovic Courtès [Tue, 2 Oct 2018 14:18:30 +0000 (16:18 +0200)]
gnu: guile-cairo: Update to 1.10.0.

* gnu/packages/gtk.scm (guile-cairo): Update to 1.10.0.
[source]: Add 'snippet'.
[arguments]: Remove.

5 years agognu: Add r-acclma.
Leo Famulari [Tue, 2 Oct 2018 20:29:25 +0000 (16:29 -0400)]
gnu: Add r-acclma.

* gnu/packages/cran.scm (r-acclma): New variable.

5 years agognu: Add r-acceptancesampling.
pimi [Tue, 2 Oct 2018 20:28:42 +0000 (16:28 -0400)]
gnu: Add r-acceptancesampling.

* gnu/packages/cran.scm (r-acceptancesampling): New variable.

5 years agognu: Add r-aca.
pimi [Tue, 2 Oct 2018 20:27:12 +0000 (16:27 -0400)]
gnu: Add r-aca.

* gnu/packages/cran.scm (r-aca): New variable.

5 years agognu: Add r-ac3net.
pimi [Tue, 2 Oct 2018 20:26:10 +0000 (16:26 -0400)]
gnu: Add r-ac3net.

* gnu/packages/cran.scm (r-ac3net): New variable.

5 years agognu: Add r-absfiltergsea.
pimi [Tue, 2 Oct 2018 20:23:12 +0000 (16:23 -0400)]
gnu: Add r-absfiltergsea.

* gnu/packages/bioinformatics.scm (r-absfiltergsea): New variable.

5 years agognu: Add r-absim.
pimi [Tue, 2 Oct 2018 20:16:45 +0000 (16:16 -0400)]
gnu: Add r-absim.

* gnu/packages/cran.scm (r-absim): New variable.

5 years agognu: Add poretools.
pimi [Tue, 2 Oct 2018 20:03:59 +0000 (16:03 -0400)]
gnu: Add poretools.

* gnu/packages/bioinformatics.scm (poretools): New variable.

5 years agognu: Add r-accelerometry.
pimi [Tue, 11 Sep 2018 13:18:27 +0000 (15:18 +0200)]
gnu: Add r-accelerometry.

gnu/packages/cran.scm (r-accelerometry): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
5 years agognu: Add r-dvmisc.
pimi [Tue, 11 Sep 2018 13:18:26 +0000 (15:18 +0200)]
gnu: Add r-dvmisc.

gnu/packages/cran.scm (r-dvmisc): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
5 years agognu: Add r-rbenchmark.
pimi [Tue, 11 Sep 2018 13:18:25 +0000 (15:18 +0200)]
gnu: Add r-rbenchmark.

gnu/packages/cran.scm (r-rbenchmark): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
5 years agognu: Syncthing: Update to 0.14.51.
Leo Famulari [Sat, 29 Sep 2018 21:21:20 +0000 (17:21 -0400)]
gnu: Syncthing: Update to 0.14.51.

* gnu/packages/syncthing.scm (syncthing): Update to 0.14.51.
[arguments]: Adjust the 'increase-test-timeout' phase.
[inputs]: Add go-gopkg.in-ldap.v2.

5 years agognu: go-github-com-thejerf-suture: Update to 3.0.0-0.bf6ee6a.
Leo Famulari [Sat, 29 Sep 2018 21:20:31 +0000 (17:20 -0400)]
gnu: go-github-com-thejerf-suture: Update to 3.0.0-0.bf6ee6a.

* gnu/packages/syncthing.scm (go-github-com-thejerf-suture): Update to
3.0.0-0.bf6ee6a.

5 years agognu: Add gopkg.in/ldap.v2.
Leo Famulari [Sat, 29 Sep 2018 21:19:58 +0000 (17:19 -0400)]
gnu: Add gopkg.in/ldap.v2.

* gnu/packages/syncthing.scm (go-gopkg.in-ldap.v2): New variable.

5 years agognu: Add gopkg.in/asn1-ber.v1.
Leo Famulari [Sat, 29 Sep 2018 21:19:26 +0000 (17:19 -0400)]
gnu: Add gopkg.in/asn1-ber.v1.

* gnu/packages/syncthing.scm (go-gopkg.in-asn1-ber.v1): New variable.

5 years agognu: LibreOffice: Fix "File > Open" crash on foreign distros.
Leo Famulari [Sat, 29 Sep 2018 03:30:55 +0000 (23:30 -0400)]
gnu: LibreOffice: Fix "File > Open" crash on foreign distros.

Fixes <https://bugs.gnu.org/30642>.

* gnu/packages/libreoffice.scm (libreoffice)[build-system]: Use
glib-or-gtk-build-system.
[arguments]: Set '#:out-of-source #f'.

5 years agognu: Audacity: Use glib-or-gtk-build-system instead of a wrapper.
Leo Famulari [Sun, 30 Sep 2018 16:59:01 +0000 (12:59 -0400)]
gnu: Audacity: Use glib-or-gtk-build-system instead of a wrapper.

* gnu/packages/audio.scm (audacity)[build-system]: Use glib-or-gtk-build-system.
[arguments]: Remove the 'wrap-program' phase. Set #:out-of-source #f.

5 years agobuild-system/asdf: Properly handle dependency specification casing.
Andy Patterson [Tue, 2 Oct 2018 08:57:31 +0000 (04:57 -0400)]
build-system/asdf: Properly handle dependency specification casing.

* guix/build/lisp-utils.scm (normalize-dependency): Modify match
clauses to match the upper-case symbols that lisp produces.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: enlightenment: Fix keyboard switching
Timo Eisenmann [Mon, 1 Oct 2018 16:10:35 +0000 (18:10 +0200)]
gnu: enlightenment: Fix keyboard switching

* gnu/packages/enlightenment.scm (enlightenment)[inputs]: Add 'setxkbmap'
[arguments]: Set absolute file name to 'setxkbmap'

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agodoc: Add static network example.
Simon Josefsson [Mon, 1 Oct 2018 10:45:59 +0000 (12:45 +0200)]
doc: Add static network example.

* doc/guix.texi (Networking Services): Add example for static-networking-service.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
5 years agognu: cuirass: Update to fe2b73c.
Clément Lassieur [Tue, 2 Oct 2018 11:19:44 +0000 (13:19 +0200)]
gnu: cuirass: Update to fe2b73c.

* gnu/packages/ci.scm (cuirass): Update to fe2b73c.

5 years agoservices: Add Gitolite.
Christopher Baines [Fri, 13 Jul 2018 19:39:46 +0000 (20:39 +0100)]
services: Add Gitolite.

* gnu/services/version-control.scm (<gitolite-configuration>,
<gitolite-rc-file>): New record types.
(gitolite-accounts, gitolite-activation): New procedures.
(gitolite-service-type): New variables.
* gnu/tests/version-control.scm (%gitolite-test-admin-keypair, %gitolite-os,
%test-gitolite): New variables.
(run-gitolite-test): New procedure.
* doc/guix.texi (Version Control): Document the gitolite service.

5 years agognu: re2c: Update to 1.1.1.
Tobias Geerinckx-Rice [Mon, 1 Oct 2018 20:08:46 +0000 (22:08 +0200)]
gnu: re2c: Update to 1.1.1.

* gnu/packages/re2c.scm (re2c): Update to 1.1.1.

5 years agognu: perl-socket6: Update to 0.29.
Tobias Geerinckx-Rice [Mon, 1 Oct 2018 20:12:45 +0000 (22:12 +0200)]
gnu: perl-socket6: Update to 0.29.

* gnu/packages/networking.scm (perl-socket6): Update to 0.29.

5 years agognu: recode: Update to 3.7.1.
Tobias Geerinckx-Rice [Mon, 1 Oct 2018 20:58:19 +0000 (22:58 +0200)]
gnu: recode: Update to 3.7.1.

* gnu/packages/textutils.scm (recode): Update to 3.7.1.

5 years agognu: Add r-acc.
pimi [Mon, 1 Oct 2018 12:53:00 +0000 (08:53 -0400)]
gnu: Add r-acc.

* gnu/packages/cran.scm (r-acc): New variable.

5 years agognu: Add r-physicalactivity.
pimi [Mon, 1 Oct 2018 12:52:34 +0000 (08:52 -0400)]
gnu: Add r-physicalactivity.

* gnu/packages/cran.scm (r-physicalactivity): New variable.

5 years agognu: Add r-nleqslv.
pimi [Mon, 1 Oct 2018 12:52:01 +0000 (08:52 -0400)]
gnu: Add r-nleqslv.

* gnu/packages/cran.scm (r-nleqslv): New variable.

5 years agognu: Add r-mhsmm.
pimi [Mon, 1 Oct 2018 12:49:21 +0000 (08:49 -0400)]
gnu: Add r-mhsmm.

* gnu/packages/cran.scm (r-mhsmm): New variable.

5 years agognu: wine-staging: Update to 3.17.
Rutger Helling [Mon, 1 Oct 2018 12:54:46 +0000 (14:54 +0200)]
gnu: wine-staging: Update to 3.17.

* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.17.
* gnu/packages/wine.scm (wine-staging): Update to 3.17.

5 years agognu: Add r-accelmissing.
pimi [Mon, 1 Oct 2018 12:30:37 +0000 (08:30 -0400)]
gnu: Add r-accelmissing.

* gnu/packages/cran.scm (r-accelmissing): New variable.