jackhill/guix/guix.git
3 years agognu: Add xnotify.
Oleg Pykhalov [Tue, 6 Oct 2020 19:43:18 +0000 (22:43 +0300)]
gnu: Add xnotify.

* gnu/packages/wm.scm (xnotify): New variable.

3 years agognu: Add emacs-ob-sclang.
Pierre Langlois [Sat, 3 Oct 2020 11:13:50 +0000 (12:13 +0100)]
gnu: Add emacs-ob-sclang.

Remove emacs-org-contrib's dependency on SuperCollider by extracting
ob-sclang.el into its own package.

* gnu/packages/emacs-xyz.scm (emacs-org-contrib)[source]: Add snippet
that deletes ob-sclang.el.
[propagated-inputs]: Remove emacs-scel.
(emacs-ob-sclang): New variable.

3 years agognu: emacs-geiser: Update to 0.12.
Nicolas Goaziou [Tue, 6 Oct 2020 19:34:23 +0000 (21:34 +0200)]
gnu: emacs-geiser: Update to 0.12.

* gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.12.

3 years agognu: texlive-mathpazo: Include virtual font files.
Paul Garlick [Tue, 6 Oct 2020 16:46:22 +0000 (17:46 +0100)]
gnu: texlive-mathpazo: Include virtual font files.

* gnu/packages/tex.scm (texlive-mathpazo)[inherit]: Add directory.

3 years agognu: gnumeric: Update to 1.12.48.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 15:57:23 +0000 (17:57 +0200)]
gnu: gnumeric: Update to 1.12.48.

This brings Python 3 support & fixes building against goffice@0.10.48.

* gnu/packages/gnome.scm (gnumeric): Update to 1.12.48.
[inputs]: Replace python-2 and python2-gobject with python and
python-pygobject, respectively.

3 years agognu: perl-digest-md5: Update to 2.58.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 13:25:13 +0000 (15:25 +0200)]
gnu: perl-digest-md5: Update to 2.58.

* gnu/packages/perl.scm (perl-digest-md5): Update to 2.58.
[arguments]: Remove field.

3 years agognu: knot: Enable XDP.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 10:46:28 +0000 (12:46 +0200)]
gnu: knot: Enable XDP.

* gnu/packages/dns.scm (knot)[source]: Snip out bundled libbpf sources.
[arguments]: Add ‘--enable-xdp=auto’ to #:configure-flags.
Add a ‘link-missing-libbpf-dependency’ phase.
[inputs]: Add libbpf and libelf.

3 years agognu: knot: Fix typo.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 01:52:34 +0000 (03:52 +0200)]
gnu: knot: Fix typo.

* gnu/packages/dns.scm (knot)[arguments]: Fix a typo in
the #:configure-flags.

3 years agognu: knot: Fix test failure on aarch64-linux.
Simon South [Tue, 6 Oct 2020 13:56:45 +0000 (09:56 -0400)]
gnu: knot: Fix test failure on aarch64-linux.

* gnu/packages/dns.scm (knot)[source]: Apply patch from upstream that
helps ensure the "test_net_shortwrite" test suite can complete
regardless of platform or configuration.
* gnu/packages/patches/knot-test_net_shortwrite-ensure-connection.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
3 years agognu: knot: Build & install the Info manual.
Simon South [Tue, 6 Oct 2020 13:56:44 +0000 (09:56 -0400)]
gnu: knot: Build & install the Info manual.

* gnu/packages/dns.scm (knot)[arguments]: Add "build-info" and
"install-info" phases.
[native-inputs]: Add texinfo and python-sphinx.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
3 years agognu: knot: Enable DNS-over-HTTPS support in kdig.
Simon South [Tue, 6 Oct 2020 13:56:43 +0000 (09:56 -0400)]
gnu: knot: Enable DNS-over-HTTPS support in kdig.

* gnu/packages/dns.scm (knot)[inputs]: Add nghttp2:lib.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
3 years agoRevert "build: svn: Handle fetch errors."
Paul Garlick [Tue, 6 Oct 2020 13:44:09 +0000 (14:44 +0100)]
Revert "build: svn: Handle fetch errors."

This reverts commit 2fb12dd1bb725592e1561ac8f4b32fb68accb161, which
causes the 'svn export' command to fail with:

svn: E155000: Destination directory exists; please remove the directory
or use --force to overwrite

3 years agognu: Add texlive-mathpazo.
Paul Garlick [Tue, 6 Oct 2020 13:25:00 +0000 (14:25 +0100)]
gnu: Add texlive-mathpazo.

* gnu/packages/tex.scm (texlive-mathpazo): New variable.

3 years agognu: vim: Update to 8.2.1805.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 13:14:03 +0000 (15:14 +0200)]
gnu: vim: Update to 8.2.1805.

* gnu/packages/vim.scm (vim): Update to 8.2.1805.

3 years agognu: pipewire: Update to 0.3.13.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 13:10:37 +0000 (15:10 +0200)]
gnu: pipewire: Update to 0.3.13.

* gnu/packages/linux.scm (pipewire): Update to 0.3.13.

3 years agognu: praat: Update to 6.1.26.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 12:48:33 +0000 (14:48 +0200)]
gnu: praat: Update to 6.1.26.

* gnu/packages/language.scm (praat): Update to 6.1.26.

3 years agognu: libtsm: Remove bundled libxkbcommon header.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 12:32:35 +0000 (14:32 +0200)]
gnu: libtsm: Remove bundled libxkbcommon header.

* gnu/packages/terminals.scm (libtsm)[source]: Snip xkbcommon-keysyms.h.

3 years agognu: libtsm: Make all inputs native.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 12:30:19 +0000 (14:30 +0200)]
gnu: libtsm: Make all inputs native.

* gnu/packages/terminals.scm (libtsm)[inputs]: Move check & libxkbcommon
from here…
[native-inputs]: …to here.

3 years agognu: stockfish: Update to 12.
Michael Rohleder [Tue, 6 Oct 2020 10:32:57 +0000 (12:32 +0200)]
gnu: stockfish: Update to 12.

* gnu/packages/games.scm (stockfish): Update to 12.
[inputs]: Add fetching of the official neural network file.
[arguments]: Add phase 'copy-net to copy this file and embed it.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
3 years agognu: r-gqtlbase: Update to 1.20.4.
Ricardo Wurmus [Tue, 6 Oct 2020 11:12:11 +0000 (13:12 +0200)]
gnu: r-gqtlbase: Update to 1.20.4.

* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.20.4.

3 years agognu: r-rhdf5: Update to 2.32.3.
Ricardo Wurmus [Tue, 6 Oct 2020 11:12:08 +0000 (13:12 +0200)]
gnu: r-rhdf5: Update to 2.32.3.

* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.3.

3 years agognu: r-biocstyle: Update to 2.16.1.
Ricardo Wurmus [Tue, 6 Oct 2020 11:12:05 +0000 (13:12 +0200)]
gnu: r-biocstyle: Update to 2.16.1.

* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.16.1.

3 years agognu: r-bgx: Update to 1.54.1.
Ricardo Wurmus [Tue, 6 Oct 2020 11:12:02 +0000 (13:12 +0200)]
gnu: r-bgx: Update to 1.54.1.

* gnu/packages/bioconductor.scm (r-bgx): Update to 1.54.1.

3 years agognu: r-xcms: Update to 3.10.2.
Ricardo Wurmus [Tue, 6 Oct 2020 11:11:59 +0000 (13:11 +0200)]
gnu: r-xcms: Update to 3.10.2.

* gnu/packages/bioconductor.scm (r-xcms): Update to 3.10.2.

3 years agognu: r-atacseqqc: Update to 1.12.5.
Ricardo Wurmus [Tue, 6 Oct 2020 11:11:56 +0000 (13:11 +0200)]
gnu: r-atacseqqc: Update to 1.12.5.

* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.5.

3 years agognu: r-gosemsim: Update to 2.14.2.
Ricardo Wurmus [Tue, 6 Oct 2020 11:11:53 +0000 (13:11 +0200)]
gnu: r-gosemsim: Update to 2.14.2.

* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.2.

3 years agognu: r-karyoploter: Update to 1.14.1.
Ricardo Wurmus [Tue, 6 Oct 2020 11:11:50 +0000 (13:11 +0200)]
gnu: r-karyoploter: Update to 1.14.1.

* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.14.1.

3 years agognu: r-diffbind: Update to 2.16.2.
Ricardo Wurmus [Tue, 6 Oct 2020 11:11:40 +0000 (13:11 +0200)]
gnu: r-diffbind: Update to 2.16.2.

* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.16.2.

3 years agognu: sbcl-cl-base64: Declare a source file-name.
Efraim Flashner [Tue, 6 Oct 2020 10:46:35 +0000 (13:46 +0300)]
gnu: sbcl-cl-base64: Declare a source file-name.

* gnu/packages/lisp-xyz.scm (sbcl-cl-base64)[source]: Add file-name
field.

3 years agognu: memkind: Declare a source file-name.
Efraim Flashner [Tue, 6 Oct 2020 10:45:35 +0000 (13:45 +0300)]
gnu: memkind: Declare a source file-name.

* gnu/packages/disk.scm (memkind)[source]: Add file-name field.

3 years agognu: python-tox: Update to 3.20.0.
Joseph LaFreniere [Tue, 6 Oct 2020 01:27:35 +0000 (20:27 -0500)]
gnu: python-tox: Update to 3.20.0.

* gnu/packages/python-xyz.scm (python-tox): Update to 3.20.0.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
3 years agognu: Add emacs-python-black.
Joseph LaFreniere [Sun, 4 Oct 2020 22:29:36 +0000 (17:29 -0500)]
gnu: Add emacs-python-black.

* gnu/packages/emacs-xyz.scm (emacs-python-black): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
3 years agognu: Add python-black-macchiato.
Joseph LaFreniere [Sun, 4 Oct 2020 22:29:17 +0000 (17:29 -0500)]
gnu: Add python-black-macchiato.

* gnu/packages/python-xyz.scm (python-black-macchiato): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
3 years agognu: zrythm: Update to 1.0.0-alpha.3.0.1.
Alexandros Theodotou [Fri, 2 Oct 2020 17:19:00 +0000 (18:19 +0100)]
gnu: zrythm: Update to 1.0.0-alpha.3.0.1.

* gnu/packages/music.scm (zrythm): Update to 1.0.0-alpha.3.0.1.
[arguments]: Explicitly enable RtMidi support in #:configure-flags.
<phases>: Remove xdg-open patch (no longer needed).

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
3 years agognu: stockfish: Fix typo in description.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 09:02:10 +0000 (11:02 +0200)]
gnu: stockfish: Fix typo in description.

* gnu/packages/games.scm (stockfish)[description]: Fix typo.

3 years agognu: libbpf: Fix erroneous use of DESTDIR.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 08:28:29 +0000 (10:28 +0200)]
gnu: libbpf: Fix erroneous use of DESTDIR.

It broke the pkg-config file and is almost always a mistake.

* gnu/packages/linux.scm (libbpf)[arguments]: Correctly set PREFIX.

3 years agobuild: svn: Handle fetch errors.
zimoun [Mon, 5 Oct 2020 16:47:39 +0000 (18:47 +0200)]
build: svn: Handle fetch errors.

* guix/build/svn.scm (svn-fetch): Add 'guard' to handle errors.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
3 years agobuild: hg: Handle fetch errors.
zimoun [Mon, 5 Oct 2020 16:36:34 +0000 (18:36 +0200)]
build: hg: Handle fetch errors.

* guix/build/hg.scm (hg-fetch): Add 'guard' to handle errors.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
3 years agognu: chatty: Update to 0.1.16.
Michael Rohleder [Mon, 5 Oct 2020 06:57:44 +0000 (08:57 +0200)]
gnu: chatty: Update to 0.1.16.

* gnu/packages/messaging.scm (chatty): Update to 0.1.16.
[inputs]: Add gsettings-desktop-schemas.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
3 years agognu: emacs-dtrt-indent: Update to 1.2.
Joseph LaFreniere [Sun, 4 Oct 2020 18:58:06 +0000 (13:58 -0500)]
gnu: emacs-dtrt-indent: Update to 1.2.

* gnu/packages/emacs-xyz.scm (emacs-dtrt-indent): Update to 1.2.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
3 years agognu: emacs-helpful: Update to 0.18.
Michael Rohleder [Sun, 4 Oct 2020 10:17:47 +0000 (12:17 +0200)]
gnu: emacs-helpful: Update to 0.18.

* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.18.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
3 years agognu: Add memkind.
Danny Milosavljevic [Tue, 6 Oct 2020 07:54:31 +0000 (09:54 +0200)]
gnu: Add memkind.

* gnu/packages/disk.scm (memkind): New variable.

3 years agoimages: Add pine64-barebones-raw-image.
Mathieu Othacehe [Tue, 6 Oct 2020 07:50:55 +0000 (09:50 +0200)]
images: Add pine64-barebones-raw-image.

* gnu/system/images/pine64.scm (pine64-barebones-raw-image): New variable.
* gnu/ci.scm (%guix-system-images): Add it.

3 years agobuild-system/cargo: Don't install .crates.toml file.
Efraim Flashner [Tue, 6 Oct 2020 07:29:47 +0000 (10:29 +0300)]
build-system/cargo: Don't install .crates.toml file.

Fixes <https://issues.guix.gnu.org/43810>.

* guix/build/cargo-build-system.scm (install): Remove installed
.crates.toml file.

3 years agognu: emacs-ivy-posframe: Update to 0.5.0.
Nicolas Goaziou [Tue, 6 Oct 2020 07:09:48 +0000 (09:09 +0200)]
gnu: emacs-ivy-posframe: Update to 0.5.0.

* gnu/packages/emacs-xyz.scm (emacs-ivy-posframe): Update to 0.5.0.

3 years agognu: vlang: Correctly refer to output directories.
Efraim Flashner [Tue, 6 Oct 2020 06:45:13 +0000 (09:45 +0300)]
gnu: vlang: Correctly refer to output directories.

* gnu/packages/vlang.scm (vlang)[arguments]: In custom 'install phase
correctly refer to 'outputs'.

3 years agognu: vlang: Use cc-for-target.
Efraim Flashner [Tue, 6 Oct 2020 06:44:25 +0000 (09:44 +0300)]
gnu: vlang: Use cc-for-target.

* gnu/packages/vlang.scm (vlang)[arguments]: Don't hardcode gcc in
make-flags. In custom 'patch-makefile, don't hardcode gcc.

3 years agoservices: dnsmasq: Add TFTP configuration fields.
Danny Milosavljevic [Sun, 27 Sep 2020 19:06:30 +0000 (21:06 +0200)]
services: dnsmasq: Add TFTP configuration fields.

* gnu/services/dns.scm (<dnsmasq-configuration>): Add TFTP configuration
fields.
(dnsmasq-shepherd-service): Use them.
* doc/guix.texi (DNS Services): Document them.

3 years agognu: lsh: Enable some tests.
Maxim Cournoyer [Tue, 6 Oct 2020 03:52:24 +0000 (23:52 -0400)]
gnu: lsh: Enable some tests.

* gnu/packages/ssh.scm (lsh)[native-inputs]: Add autoconf and automake.
[arguments]: Remove #:tests? argument.
[phases]{disable-failing-tests}: New phase.

3 years agognu: lsh: Fix X11 forwarding.
Maxim Cournoyer [Tue, 6 Oct 2020 03:48:45 +0000 (23:48 -0400)]
gnu: lsh: Fix X11 forwarding.

Fixes <https://issues.guix.gnu.org/24049>.

* gnu/packages/patches/lsh-fix-x11-forwarding.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/ssh.scm (lsh)[source]: Apply it.
[inputs]: Add libxau.

Reported-by: myglc2 <myglc2@gmail.com>
3 years agognu: perl-cgi: Update to 4.51.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 00:53:24 +0000 (02:53 +0200)]
gnu: perl-cgi: Update to 4.51.

* gnu/packages/web.scm (perl-cgi): Update to 4.51.

3 years agognu: python-flake8: Update to 3.8.4.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 00:53:13 +0000 (02:53 +0200)]
gnu: python-flake8: Update to 3.8.4.

* gnu/packages/python-xyz.scm (python-flake8): Update to 3.8.4.

3 years agognu: seahorse: Update to 3.36.2.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 00:45:39 +0000 (02:45 +0200)]
gnu: seahorse: Update to 3.36.2.

* gnu/packages/gnome.scm (seahorse): Update to 3.36.2.

3 years agognu: s6-portable-utils: Update to 2.2.3.0.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 00:40:51 +0000 (02:40 +0200)]
gnu: s6-portable-utils: Update to 2.2.3.0.

* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.3.0.

3 years agognu: s6-dns: Update to 2.3.3.0.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 00:40:49 +0000 (02:40 +0200)]
gnu: s6-dns: Update to 2.3.3.0.

* gnu/packages/skarnet.scm (s6-dns): Update to 2.3.3.0.

3 years agognu: obs: Update to 26.0.1.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 00:40:14 +0000 (02:40 +0200)]
gnu: obs: Update to 26.0.1.

* gnu/packages/video.scm (obs): Update to 26.0.1.

3 years agognu: goffice: Update to 0.10.48.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 00:40:02 +0000 (02:40 +0200)]
gnu: goffice: Update to 0.10.48.

* gnu/packages/gnome.scm (goffice): Update to 0.10.48.

3 years agognu: spice-protocol: Update to 0.14.3.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 00:35:12 +0000 (02:35 +0200)]
gnu: spice-protocol: Update to 0.14.3.

* gnu/packages/spice.scm (spice-protocol): Update to 0.14.3.

3 years agognu: Fix up package copyright headers.
Tobias Geerinckx-Rice [Tue, 6 Oct 2020 00:03:42 +0000 (02:03 +0200)]
gnu: Fix up package copyright headers.

3 years agognu: libshout: Update to 2.4.4.
Tobias Geerinckx-Rice [Mon, 5 Oct 2020 19:29:33 +0000 (21:29 +0200)]
gnu: libshout: Update to 2.4.4.

* gnu/packages/xiph.scm (libshout): Update to 2.4.4.

3 years agognu: vlang: Run mosts tests.
Tobias Geerinckx-Rice [Mon, 5 Oct 2020 23:02:53 +0000 (01:02 +0200)]
gnu: vlang: Run mosts tests.

* gnu/packages/vlang.scm (vlang)[arguments]: Enable tests and add a new
‘delete-failing-tests’ and custom ‘check’ phase.
[native-inputs]: Add libx11, node, openssl, and sqlite.

3 years agognu: vlang: Update to 0.1.29.
Tobias Geerinckx-Rice [Mon, 5 Oct 2020 23:01:33 +0000 (01:01 +0200)]
gnu: vlang: Update to 0.1.29.

* gnu/packages/vlang.scm (vlang): Update to 0.1.29.

3 years agognu: execline: Update to 2.6.1.1.
Tobias Geerinckx-Rice [Mon, 5 Oct 2020 22:01:22 +0000 (00:01 +0200)]
gnu: execline: Update to 2.6.1.1.

* gnu/packages/skarnet.scm (execline): Update to 2.6.1.1.

3 years agognu: skalibs: Update to 2.9.3.0.
Tobias Geerinckx-Rice [Mon, 5 Oct 2020 22:01:16 +0000 (00:01 +0200)]
gnu: skalibs: Update to 2.9.3.0.

* gnu/packages/skarnet.scm (skalibs): Update to 2.9.3.0.

3 years agognu: libde265: Update to 1.0.7.
Tobias Geerinckx-Rice [Mon, 5 Oct 2020 21:58:47 +0000 (23:58 +0200)]
gnu: libde265: Update to 1.0.7.

* gnu/packages/video.scm (libde265): Update to 1.0.7.

3 years agognu: vim: Update to 8.2.1801.
Tobias Geerinckx-Rice [Mon, 5 Oct 2020 21:53:29 +0000 (23:53 +0200)]
gnu: vim: Update to 8.2.1801.

* gnu/packages/vim.scm (vim): Update to 8.2.1801.

3 years agognu: youtube-viewer: Update to 3.7.9.
Tobias Geerinckx-Rice [Mon, 5 Oct 2020 20:56:44 +0000 (22:56 +0200)]
gnu: youtube-viewer: Update to 3.7.9.

* gnu/packages/video.scm (youtube-viewer): Update to 3.7.9.
[inputs]: Add perl-memoize.

3 years agognu: r-tclust: Update to 1.4-2.
Ricardo Wurmus [Mon, 5 Oct 2020 20:46:41 +0000 (22:46 +0200)]
gnu: r-tclust: Update to 1.4-2.

* gnu/packages/statistics.scm (r-tclust): Update to 1.4-2.

3 years agognu: r-car: Update to 3.0-10.
Ricardo Wurmus [Mon, 5 Oct 2020 20:46:38 +0000 (22:46 +0200)]
gnu: r-car: Update to 3.0-10.

* gnu/packages/statistics.scm (r-car): Update to 3.0-10.

3 years agognu: r-quantreg: Update to 5.73.
Ricardo Wurmus [Mon, 5 Oct 2020 20:46:35 +0000 (22:46 +0200)]
gnu: r-quantreg: Update to 5.73.

* gnu/packages/statistics.scm (r-quantreg): Update to 5.73.

3 years agognu: r-fpc: Update to 2.2-8.
Ricardo Wurmus [Mon, 5 Oct 2020 20:46:32 +0000 (22:46 +0200)]
gnu: r-fpc: Update to 2.2-8.

* gnu/packages/statistics.scm (r-fpc): Update to 2.2-8.

3 years agognu: r-gplots: Update to 3.1.0.
Ricardo Wurmus [Mon, 5 Oct 2020 20:46:29 +0000 (22:46 +0200)]
gnu: r-gplots: Update to 3.1.0.

* gnu/packages/statistics.scm (r-gplots): Update to 3.1.0.
[propagated-inputs]: Remove r-gdata.

3 years agognu: r-matrixstats: Update to 0.57.0.
Ricardo Wurmus [Mon, 5 Oct 2020 20:46:24 +0000 (22:46 +0200)]
gnu: r-matrixstats: Update to 0.57.0.

* gnu/packages/statistics.scm (r-matrixstats): Update to 0.57.0.

3 years agognu: r-rsqlite: Update to 2.2.1.
Ricardo Wurmus [Mon, 5 Oct 2020 20:46:21 +0000 (22:46 +0200)]
gnu: r-rsqlite: Update to 2.2.1.

* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.1.
[native-inputs]: Add r-knitr.

3 years agognu: r-rmarkdown: Update to 2.4.
Ricardo Wurmus [Mon, 5 Oct 2020 20:46:17 +0000 (22:46 +0200)]
gnu: r-rmarkdown: Update to 2.4.

* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.4.
[propagated-inputs]: Remove r-base64enc.

3 years agognu: r-readr: Update to 1.4.0.
Ricardo Wurmus [Mon, 5 Oct 2020 20:46:13 +0000 (22:46 +0200)]
gnu: r-readr: Update to 1.4.0.

* gnu/packages/statistics.scm (r-readr): Update to 1.4.0.
[propagated-inputs]: Remove r-rcpp; add r-cli, r-cpp11, r-lifecycle, and r-rlang.
[native-inputs]: Add r-knitr.

3 years agognu: r-withr: Update to 2.3.0.
Ricardo Wurmus [Mon, 5 Oct 2020 20:46:05 +0000 (22:46 +0200)]
gnu: r-withr: Update to 2.3.0.

* gnu/packages/statistics.scm (r-withr): Update to 2.3.0.

3 years agognu: r-devtools: Update to 2.3.2.
Ricardo Wurmus [Mon, 5 Oct 2020 20:46:02 +0000 (22:46 +0200)]
gnu: r-devtools: Update to 2.3.2.

* gnu/packages/statistics.scm (r-devtools): Update to 2.3.2.

3 years agognu: r-openssl: Update to 1.4.3.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:59 +0000 (22:45 +0200)]
gnu: r-openssl: Update to 1.4.3.

* gnu/packages/statistics.scm (r-openssl): Update to 1.4.3.

3 years agognu: r-backports: Update to 1.1.10.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:55 +0000 (22:45 +0200)]
gnu: r-backports: Update to 1.1.10.

* gnu/packages/statistics.scm (r-backports): Update to 1.1.10.

3 years agognu: r-multitaper: Update to 1.0-15.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:52 +0000 (22:45 +0200)]
gnu: r-multitaper: Update to 1.0-15.

* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-15.

3 years agognu: r-coda: Update to 0.19-4.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:49 +0000 (22:45 +0200)]
gnu: r-coda: Update to 0.19-4.

* gnu/packages/statistics.scm (r-coda): Update to 0.19-4.

3 years agognu: r-knitr: Update to 1.30.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:46 +0000 (22:45 +0200)]
gnu: r-knitr: Update to 1.30.

* gnu/packages/statistics.scm (r-knitr): Update to 1.30.

3 years agognu: r-survival: Update to 3.2-7.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:43 +0000 (22:45 +0200)]
gnu: r-survival: Update to 3.2-7.

* gnu/packages/statistics.scm (r-survival): Update to 3.2-7.

3 years agognu: r-seurat: Update to 3.2.2.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:40 +0000 (22:45 +0200)]
gnu: r-seurat: Update to 3.2.2.

* gnu/packages/cran.scm (r-seurat): Update to 3.2.2.

3 years agognu: r-tidytext: Update to 0.2.6.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:37 +0000 (22:45 +0200)]
gnu: r-tidytext: Update to 0.2.6.

* gnu/packages/cran.scm (r-tidytext): Update to 0.2.6.

3 years agognu: r-tidypredict: Update to 0.4.7.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:34 +0000 (22:45 +0200)]
gnu: r-tidypredict: Update to 0.4.7.

* gnu/packages/cran.scm (r-tidypredict): Update to 0.4.7.
[propagated-inputs]: Add r-stringr and r-tidyr.

3 years agognu: r-dials: Update to 0.0.9.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:29 +0000 (22:45 +0200)]
gnu: r-dials: Update to 0.0.9.

* gnu/packages/cran.scm (r-dials): Update to 0.0.9.

3 years agognu: r-rsample: Update to 0.0.8.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:26 +0000 (22:45 +0200)]
gnu: r-rsample: Update to 0.0.8.

* gnu/packages/cran.scm (r-rsample): Update to 0.0.8.
[propagated-inputs]: Add r-ellipsis, r-modeldata, and r-slider.

3 years agognu: r-workflows: Update to 0.2.0.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:20 +0000 (22:45 +0200)]
gnu: r-workflows: Update to 0.2.0.

* gnu/packages/cran.scm (r-workflows): Update to 0.2.0.
[propagated-inputs]: Add r-tidyselect.

3 years agognu: r-cpp11: Update to 0.2.2.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:16 +0000 (22:45 +0200)]
gnu: r-cpp11: Update to 0.2.2.

* gnu/packages/cran.scm (r-cpp11): Update to 0.2.2.

3 years agognu: r-gaston: Update to 1.5.7.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:13 +0000 (22:45 +0200)]
gnu: r-gaston: Update to 1.5.7.

* gnu/packages/cran.scm (r-gaston): Update to 1.5.7.

3 years agognu: r-binman: Update to 0.1.2.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:09 +0000 (22:45 +0200)]
gnu: r-binman: Update to 0.1.2.

* gnu/packages/cran.scm (r-binman): Update to 0.1.2.

3 years agognu: r-rxnat: Update to 1.0.14.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:06 +0000 (22:45 +0200)]
gnu: r-rxnat: Update to 1.0.14.

* gnu/packages/cran.scm (r-rxnat): Update to 1.0.14.
[propagated-inputs]: Add r-tibble.

3 years agognu: r-aws: Update to 2.5.
Ricardo Wurmus [Mon, 5 Oct 2020 20:45:02 +0000 (22:45 +0200)]
gnu: r-aws: Update to 2.5.

* gnu/packages/cran.scm (r-aws): Update to 2.5.

3 years agognu: r-rpf: Update to 1.0.5.
Ricardo Wurmus [Mon, 5 Oct 2020 20:44:59 +0000 (22:44 +0200)]
gnu: r-rpf: Update to 1.0.5.

* gnu/packages/cran.scm (r-rpf): Update to 1.0.5.

3 years agognu: r-regsem: Update to 1.6.2.
Ricardo Wurmus [Mon, 5 Oct 2020 20:44:56 +0000 (22:44 +0200)]
gnu: r-regsem: Update to 1.6.2.

* gnu/packages/cran.scm (r-regsem): Update to 1.6.2.
[native-inputs]: Add r-knitr.

3 years agognu: r-stm: Update to 1.3.6.
Ricardo Wurmus [Mon, 5 Oct 2020 20:44:52 +0000 (22:44 +0200)]
gnu: r-stm: Update to 1.3.6.

* gnu/packages/cran.scm (r-stm): Update to 1.3.6.

3 years agognu: r-quanteda: Update to 2.1.2.
Ricardo Wurmus [Mon, 5 Oct 2020 20:44:49 +0000 (22:44 +0200)]
gnu: r-quanteda: Update to 2.1.2.

* gnu/packages/cran.scm (r-quanteda): Update to 2.1.2.

3 years agognu: r-diagram: Update to 1.6.5.
Ricardo Wurmus [Mon, 5 Oct 2020 20:44:45 +0000 (22:44 +0200)]
gnu: r-diagram: Update to 1.6.5.

* gnu/packages/cran.scm (r-diagram): Update to 1.6.5.