jackhill/guix/guix.git
3 years agognu: Add r-msmstests.
zimoun [Fri, 4 Dec 2020 01:08:41 +0000 (02:08 +0100)]
gnu: Add r-msmstests.

* gnu/packages/bioconductor.scm (r-msmstests): New variable.

3 years agognu: Add r-msmseda.
zimoun [Fri, 4 Dec 2020 01:07:45 +0000 (02:07 +0100)]
gnu: Add r-msmseda.

* gnu/packages/bioconductor.scm (r-msmseq): New variable.

3 years agognu: r-pcamethods: Update to 1.82.0.
zimoun [Fri, 30 Oct 2020 15:00:34 +0000 (16:00 +0100)]
gnu: r-pcamethods: Update to 1.82.0.

* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.82.0.

3 years agognu: r-mzid: Update to 1.28.0.
zimoun [Fri, 30 Oct 2020 15:00:31 +0000 (16:00 +0100)]
gnu: r-mzid: Update to 1.28.0.

* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.28.0.
[propagated-inputs]: Remove r-rcpp.

3 years agognu: r-vsn: Update to 3.58.0.
zimoun [Fri, 30 Oct 2020 15:00:28 +0000 (16:00 +0100)]
gnu: r-vsn: Update to 3.58.0.

* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.58.0.

3 years agognu: r-affy: Update to 1.68.0.
zimoun [Fri, 30 Oct 2020 15:00:25 +0000 (16:00 +0100)]
gnu: r-affy: Update to 1.68.0.

* gnu/packages/bioinformatics.scm (r-affy): Update to 1.68.0.

3 years agognu: r-affyio: Update to 1.60.0.
zimoun [Fri, 30 Oct 2020 15:00:21 +0000 (16:00 +0100)]
gnu: r-affyio: Update to 1.60.0.

* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.60.0.

3 years agognu: r-mzr: Fix linking.
Ricardo Wurmus [Sat, 21 Nov 2020 06:36:40 +0000 (07:36 +0100)]
gnu: r-mzr: Fix linking.

* gnu/packages/bioinformatics.scm (r-mzr)[arguments]: Fix linking with rhdf5
libraries.

3 years agognu: r-mzr: Update to 2.24.1.
Ricardo Wurmus [Sat, 21 Nov 2020 06:37:49 +0000 (07:37 +0100)]
gnu: r-mzr: Update to 2.24.1.

* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.24.1.

3 years agognu: r-protgenerics: Update to 1.22.0.
zimoun [Fri, 30 Oct 2020 15:00:14 +0000 (16:00 +0100)]
gnu: r-protgenerics: Update to 1.22.0.

* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.22.0.

3 years agognu: r-sva: Update to 3.38.0.
zimoun [Fri, 30 Oct 2020 15:00:11 +0000 (16:00 +0100)]
gnu: r-sva: Update to 3.38.0.

* gnu/packages/bioinformatics.scm (r-sva): Update to 3.38.0.

3 years agognu: r-methylkit: Update to 1.16.0.
zimoun [Fri, 30 Oct 2020 15:00:08 +0000 (16:00 +0100)]
gnu: r-methylkit: Update to 1.16.0.

* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.16.0.

3 years agognu: r-copywriter: Update to 2.22.0.
zimoun [Fri, 30 Oct 2020 15:00:05 +0000 (16:00 +0100)]
gnu: r-copywriter: Update to 2.22.0.

* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.22.0.

3 years agognu: r-chipseq: Update to 1.40.0.
zimoun [Fri, 30 Oct 2020 15:00:02 +0000 (16:00 +0100)]
gnu: r-chipseq: Update to 1.40.0.

* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.40.0.

3 years agognu: r-annotationfilter: Update to 1.14.0.
zimoun [Fri, 30 Oct 2020 14:59:59 +0000 (15:59 +0100)]
gnu: r-annotationfilter: Update to 1.14.0.

* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.14.0.

3 years agognu: r-tximport: Update to 1.18.0.
zimoun [Fri, 30 Oct 2020 14:59:53 +0000 (15:59 +0100)]
gnu: r-tximport: Update to 1.18.0.

* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.18.0.

3 years agognu: r-mutationalpatterns: Update to 3.0.1.
Roel Janssen [Wed, 18 Nov 2020 15:06:22 +0000 (16:06 +0100)]
gnu: r-mutationalpatterns: Update to 3.0.1.

* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 3.0.1.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-bsgenome, r-dplyr, r-ggalluvial,
r-magrittr, r-purrr, r-stringr, r-tibble, and r-tidyr; remove
r-reshape2 and r-summarizedexperiment.

3 years agognu: r-rcas: Update to 1.16.0.
zimoun [Fri, 30 Oct 2020 14:59:46 +0000 (15:59 +0100)]
gnu: r-rcas: Update to 1.16.0.

* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.16.0.

3 years agognu: r-bamsignals: Update to 1.22.0.
zimoun [Fri, 30 Oct 2020 14:59:43 +0000 (15:59 +0100)]
gnu: r-bamsignals: Update to 1.22.0.

* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.22.0.

3 years agognu: r-rhtslib: Update to 1.22.0.
zimoun [Fri, 30 Oct 2020 14:59:40 +0000 (15:59 +0100)]
gnu: r-rhtslib: Update to 1.22.0.

* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.22.0.

3 years agognu: r-zlibbioc: Update to 1.36.0.
zimoun [Fri, 30 Oct 2020 14:59:37 +0000 (15:59 +0100)]
gnu: r-zlibbioc: Update to 1.36.0.

* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.36.0.

3 years agognu: r-seqlogo: Update to 1.56.0.
zimoun [Fri, 30 Oct 2020 14:59:34 +0000 (15:59 +0100)]
gnu: r-seqlogo: Update to 1.56.0.

* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.56.0.

3 years agognu: r-genomation: Update to 1.22.0.
zimoun [Fri, 30 Oct 2020 14:59:31 +0000 (15:59 +0100)]
gnu: r-genomation: Update to 1.22.0.

* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.22.0.

3 years agognu: r-seqpattern: Update to 1.22.0.
zimoun [Fri, 30 Oct 2020 14:59:28 +0000 (15:59 +0100)]
gnu: r-seqpattern: Update to 1.22.0.

* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.22.0.

3 years agognu: r-impute: Update to 1.64.0.
zimoun [Fri, 30 Oct 2020 14:59:25 +0000 (15:59 +0100)]
gnu: r-impute: Update to 1.64.0.

* gnu/packages/bioinformatics.scm (r-impute): Update to 1.64.0.

3 years agognu: r-bsgenome: Update to 1.58.0.
zimoun [Fri, 30 Oct 2020 14:59:22 +0000 (15:59 +0100)]
gnu: r-bsgenome: Update to 1.58.0.

* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.58.0.

3 years agognu: r-topgo: Update to 2.42.0.
Roel Janssen [Wed, 18 Nov 2020 15:04:40 +0000 (16:04 +0100)]
gnu: r-topgo: Update to 2.42.0.

* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.42.0.

3 years agognu: r-genomicfeatures: Update to 1.42.1.
Roel Janssen [Wed, 18 Nov 2020 15:03:39 +0000 (16:03 +0100)]
gnu: r-genomicfeatures: Update to 1.42.1.

* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.42.1.

3 years agognu: r-rtracklayer: Update to 1.50.0.
zimoun [Fri, 30 Oct 2020 14:59:12 +0000 (15:59 +0100)]
gnu: r-rtracklayer: Update to 1.50.0.

* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.50.0.

3 years agognu: r-genomicalignments: Update to 1.26.0.
zimoun [Fri, 30 Oct 2020 14:59:09 +0000 (15:59 +0100)]
gnu: r-genomicalignments: Update to 1.26.0.

* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.26.0.

3 years agognu: r-variantannotation: Update to 1.36.0.
zimoun [Fri, 30 Oct 2020 14:58:32 +0000 (15:58 +0100)]
gnu: r-variantannotation: Update to 1.36.0.

* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.36.0.
[propagated-inputs]: Add r-matrixgenerics.

3 years agognu: r-summarizedexperiment: Update to 1.20.0.
zimoun [Fri, 30 Oct 2020 14:59:06 +0000 (15:59 +0100)]
gnu: r-summarizedexperiment: Update to 1.20.0.

* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.20.0.
[propagated-inputs]: Add r-matrixgenerics.

3 years agognu: r-rsamtools: Update to 2.6.0.
zimoun [Fri, 30 Oct 2020 14:59:00 +0000 (15:59 +0100)]
gnu: r-rsamtools: Update to 2.6.0.

* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.6.0.

3 years agognu: r-biostrings: Update to 2.58.0.
zimoun [Fri, 30 Oct 2020 14:58:57 +0000 (15:58 +0100)]
gnu: r-biostrings: Update to 2.58.0.

* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.58.0.

3 years agognu: r-biocparallel: Update to 1.24.1.
Roel Janssen [Wed, 18 Nov 2020 15:01:34 +0000 (16:01 +0100)]
gnu: r-biocparallel: Update to 1.24.1.

* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.24.1.

3 years agognu: r-biomart: Update to 2.46.0.
zimoun [Fri, 30 Oct 2020 14:58:51 +0000 (15:58 +0100)]
gnu: r-biomart: Update to 2.46.0.

* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.46.0.

3 years agognu: r-annotationdbi: Update to 1.52.0.
zimoun [Fri, 30 Oct 2020 14:58:48 +0000 (15:58 +0100)]
gnu: r-annotationdbi: Update to 1.52.0.

* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.52.0.

3 years agognu: r-biobase: Update to 2.50.0.
zimoun [Fri, 30 Oct 2020 14:58:44 +0000 (15:58 +0100)]
gnu: r-biobase: Update to 2.50.0.

* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.50.0.

3 years agognu: r-genomicranges: Update to 1.42.0.
zimoun [Fri, 30 Oct 2020 14:58:41 +0000 (15:58 +0100)]
gnu: r-genomicranges: Update to 1.42.0.

* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.42.0.

3 years agognu: r-limma: Update to 3.46.0.
zimoun [Fri, 30 Oct 2020 14:58:35 +0000 (15:58 +0100)]
gnu: r-limma: Update to 3.46.0.

* gnu/packages/bioinformatics.scm (r-limma): Update to 3.46.0.

3 years agognu: r-edger: Update to 3.32.0.
zimoun [Fri, 30 Oct 2020 14:58:29 +0000 (15:58 +0100)]
gnu: r-edger: Update to 3.32.0.

* gnu/packages/bioinformatics.scm (r-edger): Update to 3.32.0.

3 years agognu: r-genomeinfodb: Update to 1.26.0.
zimoun [Fri, 30 Oct 2020 14:58:26 +0000 (15:58 +0100)]
gnu: r-genomeinfodb: Update to 1.26.0.

* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.26.0.

3 years agognu: r-bioccheck: Update to 1.26.0.
zimoun [Fri, 30 Oct 2020 14:58:17 +0000 (15:58 +0100)]
gnu: r-bioccheck: Update to 1.26.0.

* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.26.0.

3 years agognu: r-biocstyle: Update to 2.18.0.
zimoun [Fri, 30 Oct 2020 14:58:13 +0000 (15:58 +0100)]
gnu: r-biocstyle: Update to 2.18.0.

* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.18.0.

3 years agognu: r-biocviews: Update to 1.58.0.
zimoun [Fri, 30 Oct 2020 14:58:10 +0000 (15:58 +0100)]
gnu: r-biocviews: Update to 1.58.0.

* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.58.0.

3 years agognu: r-grohmm: Update to 1.24.0.
zimoun [Fri, 30 Oct 2020 14:58:07 +0000 (15:58 +0100)]
gnu: r-grohmm: Update to 1.24.0.

* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.24.0.

3 years agognu: r-systempiper: Update to 1.24.2.
Roel Janssen [Wed, 18 Nov 2020 14:59:02 +0000 (15:59 +0100)]
gnu: r-systempiper: Update to 1.24.2.

* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.24.2.
[propagated-inputs]: Add r-iranges.

3 years agognu: r-shortread: Update to 1.48.0.
zimoun [Fri, 30 Oct 2020 14:58:01 +0000 (15:58 +0100)]
gnu: r-shortread: Update to 1.48.0.

* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.48.0.

3 years agognu: r-gostats: Update to 2.56.0.
zimoun [Fri, 30 Oct 2020 14:57:58 +0000 (15:57 +0100)]
gnu: r-gostats: Update to 2.56.0.

* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.56.0.

3 years agognu: r-category: Update to 2.56.0.
zimoun [Fri, 30 Oct 2020 14:57:55 +0000 (15:57 +0100)]
gnu: r-category: Update to 2.56.0.

* gnu/packages/bioinformatics.scm (r-category): Update to 2.56.0.

3 years agognu: r-gseabase: Update to 1.52.0.
zimoun [Fri, 30 Oct 2020 14:57:52 +0000 (15:57 +0100)]
gnu: r-gseabase: Update to 1.52.0.

* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.52.0.

3 years agognu: r-rbgl: Update to 1.66.0.
zimoun [Fri, 30 Oct 2020 14:57:49 +0000 (15:57 +0100)]
gnu: r-rbgl: Update to 1.66.0.

* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.66.0.

3 years agognu: r-annotationforge: Update to 1.32.0.
zimoun [Fri, 30 Oct 2020 14:57:46 +0000 (15:57 +0100)]
gnu: r-annotationforge: Update to 1.32.0.

* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.32.0.

3 years agognu: r-dexseq: Update to 1.36.0.
zimoun [Fri, 30 Oct 2020 14:57:43 +0000 (15:57 +0100)]
gnu: r-dexseq: Update to 1.36.0.

* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.36.0.

3 years agognu: r-deseq2: Update to 1.30.0.
zimoun [Fri, 30 Oct 2020 14:57:39 +0000 (15:57 +0100)]
gnu: r-deseq2: Update to 1.30.0.

* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.30.0.

3 years agognu: r-genefilter: Update to 1.72.0.
zimoun [Fri, 30 Oct 2020 14:57:36 +0000 (15:57 +0100)]
gnu: r-genefilter: Update to 1.72.0.

* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.72.0.

3 years agognu: r-beachmat: Update to 2.6.1.
Roel Janssen [Wed, 18 Nov 2020 16:20:48 +0000 (17:20 +0100)]
gnu: r-beachmat: Update to 2.6.1.

* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.1.

3 years agognu: r-ncdfflow: Fix r-rhdf5libs link.
zimoun [Fri, 4 Dec 2020 02:35:34 +0000 (03:35 +0100)]
gnu: r-ncdfflow: Fix r-rhdf5libs link.

* gnu/packages/bioconductor.scm (r-ncdfflow): [arguments]: Avoid to have a
plain directory on the list of libraries to link.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
3 years agognu: r-cytoml: Fix r-rhdf5libs linking.
zimoun [Fri, 4 Dec 2020 04:07:38 +0000 (05:07 +0100)]
gnu: r-cytoml: Fix r-rhdf5libs linking.

* gnu/packages/bioconductor.scm (r-cytoml): [arguments]: Avoid to have
a plain directory on the list of libraries to link.

3 years agognu: r-flowworkspace: Fix r-rhdf5libs linking.
zimoun [Fri, 4 Dec 2020 03:55:45 +0000 (04:55 +0100)]
gnu: r-flowworkspace: Fix r-rhdf5libs linking.

* gnu/packages/bioconductor.scm (r-flowworkspace): [arguments]: Avoid to have
a plain directory on the list of libraries to link.

3 years agognu: r-hdf5array: Fix r-rhdf5libs linking.
zimoun [Fri, 4 Dec 2020 02:20:55 +0000 (03:20 +0100)]
gnu: r-hdf5array: Fix r-rhdf5libs linking.

* gnu/packages/bioconductor.scm (r-hdf5array): [arguments]: Avoid to have a
plain directory on the list of libraries to link.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
3 years agognu: r-cytolib: Fix r-rhdf5libs linking.
zimoun [Fri, 4 Dec 2020 02:06:21 +0000 (03:06 +0100)]
gnu: r-cytolib: Fix r-rhdf5libs linking.

* gnu/packages/bioconductor.scm (r-cytolib): [arguments]: Avoid to have a
plain directory on the list of libraries to link.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
3 years agognu: r-rhdf5lib: Fix build.
Roel Janssen [Thu, 19 Nov 2020 14:31:09 +0000 (15:31 +0100)]
gnu: r-rhdf5lib: Fix build.

* gnu/packages/bioconductor.scm (r-rhdf5lib)[arguments]: Fix build.

3 years agognu: r-rhdf5lib: Update to 1.12.0.
zimoun [Fri, 30 Oct 2020 14:57:18 +0000 (15:57 +0100)]
gnu: r-rhdf5lib: Update to 1.12.0.

* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.0.

3 years agognu: r-hdf5array: Update to 1.18.0.
zimoun [Fri, 30 Oct 2020 14:57:15 +0000 (15:57 +0100)]
gnu: r-hdf5array: Update to 1.18.0.

* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.0.

3 years agognu: r-delayedarray: Update to 0.16.0.
zimoun [Fri, 30 Oct 2020 14:59:03 +0000 (15:59 +0100)]
gnu: r-delayedarray: Update to 0.16.0.

* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.16.0.
[propagated-inputs]: Add r-matrixgenerics; remove r-matrixstats.

3 years agognu: Add r-matrixgenerics.
Roel Janssen [Wed, 18 Nov 2020 14:51:14 +0000 (15:51 +0100)]
gnu: Add r-matrixgenerics.

* gnu/packages/bioconductor.scm (r-matrixgenerics): New variable.

3 years agognu: Add r-ggalluvial.
Roel Janssen [Wed, 18 Nov 2020 14:45:14 +0000 (15:45 +0100)]
gnu: Add r-ggalluvial.

* gnu/packages/cran.scm (r-ggalluvial): New variable.

3 years agognu: r-iranges: Update to 2.24.0.
zimoun [Fri, 30 Oct 2020 14:58:23 +0000 (15:58 +0100)]
gnu: r-iranges: Update to 2.24.0.

* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.24.0.

3 years agognu: r-s4vectors: Update to 0.28.0.
zimoun [Fri, 30 Oct 2020 14:58:20 +0000 (15:58 +0100)]
gnu: r-s4vectors: Update to 0.28.0.

* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.28.0.

3 years agognu: r-hitc: Update to 1.34.0.
zimoun [Fri, 30 Oct 2020 14:57:12 +0000 (15:57 +0100)]
gnu: r-hitc: Update to 1.34.0.

* gnu/packages/bioconductor.scm (r-hitc): Update to 1.34.0.

3 years agognu: r-fithic: Update to 1.16.0.
zimoun [Fri, 30 Oct 2020 14:57:09 +0000 (15:57 +0100)]
gnu: r-fithic: Update to 1.16.0.

* gnu/packages/bioconductor.scm (r-fithic): Update to 1.16.0.

3 years agognu: r-xvector: Update to 0.30.0.
zimoun [Fri, 30 Oct 2020 14:58:38 +0000 (15:58 +0100)]
gnu: r-xvector: Update to 0.30.0.

* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.30.0.

3 years agognu: r-rgraphviz: Update to 2.34.0.
zimoun [Fri, 30 Oct 2020 14:57:06 +0000 (15:57 +0100)]
gnu: r-rgraphviz: Update to 2.34.0.

* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.34.0.

3 years agognu: r-preprocesscore: Update to 1.52.0.
zimoun [Fri, 30 Oct 2020 14:57:03 +0000 (15:57 +0100)]
gnu: r-preprocesscore: Update to 1.52.0.

* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.0.

3 years agognu: r-fourcseq: Update to 1.24.0.
zimoun [Fri, 30 Oct 2020 14:56:59 +0000 (15:56 +0100)]
gnu: r-fourcseq: Update to 1.24.0.

* gnu/packages/bioconductor.scm (r-fourcseq): Update to 1.24.0.

3 years agognu: r-icens: Update to 1.62.0.
zimoun [Fri, 30 Oct 2020 14:56:56 +0000 (15:56 +0100)]
gnu: r-icens: Update to 1.62.0.

* gnu/packages/bioconductor.scm (r-icens): Update to 1.62.0.

3 years agognu: r-m3c: Update to 1.12.0.
zimoun [Fri, 30 Oct 2020 14:56:53 +0000 (15:56 +0100)]
gnu: r-m3c: Update to 1.12.0.

* gnu/packages/bioconductor.scm (r-m3c): Update to 1.12.0.

3 years agognu: r-rgreat: Update to 1.22.0.
zimoun [Fri, 30 Oct 2020 14:56:50 +0000 (15:56 +0100)]
gnu: r-rgreat: Update to 1.22.0.

* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.22.0.

3 years agognu: r-biodist: Update to 1.62.0.
zimoun [Fri, 30 Oct 2020 14:56:44 +0000 (15:56 +0100)]
gnu: r-biodist: Update to 1.62.0.

* gnu/packages/bioconductor.scm (r-biodist): Update to 1.62.0.

3 years agognu: r-biocworkflowtools: Update to 1.16.0.
zimoun [Fri, 30 Oct 2020 14:56:41 +0000 (15:56 +0100)]
gnu: r-biocworkflowtools: Update to 1.16.0.

* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.16.0.

3 years agognu: r-biocset: Update to 1.4.0.
zimoun [Fri, 30 Oct 2020 14:56:38 +0000 (15:56 +0100)]
gnu: r-biocset: Update to 1.4.0.

* gnu/packages/bioconductor.scm (r-biocset): Update to 1.4.0.
[propagated-inputs]: Add r-s4vectors; remove r-rtracklayer.

3 years agognu: Add r-biocio.
zimoun [Thu, 3 Dec 2020 13:33:05 +0000 (14:33 +0100)]
gnu: Add r-biocio.

* gnu/packages/bioconductor.scm (r-biocio): New variable.

3 years agognu: r-biocpkgtools: Update to 1.8.0.
zimoun [Fri, 30 Oct 2020 14:56:35 +0000 (15:56 +0100)]
gnu: r-biocpkgtools: Update to 1.8.0.

* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.0.

3 years agognu: r-biocor: Update to 1.14.0.
zimoun [Fri, 30 Oct 2020 14:56:32 +0000 (15:56 +0100)]
gnu: r-biocor: Update to 1.14.0.

* gnu/packages/bioconductor.scm (r-biocor): Update to 1.14.0.

3 years agognu: r-bioconcotk: Update to 1.10.0.
zimoun [Fri, 30 Oct 2020 14:56:29 +0000 (15:56 +0100)]
gnu: r-bioconcotk: Update to 1.10.0.

* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.10.0.

3 years agognu: r-multiassayexperiment: Update to 1.16.0.
zimoun [Fri, 30 Oct 2020 14:56:26 +0000 (15:56 +0100)]
gnu: r-multiassayexperiment: Update to 1.16.0.

* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.16.0.

3 years agognu: r-experimenthub: Update to 1.16.0.
zimoun [Fri, 30 Oct 2020 14:56:23 +0000 (15:56 +0100)]
gnu: r-experimenthub: Update to 1.16.0.

* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.0.

3 years agognu: r-biocgraph: Update to 1.52.0.
zimoun [Fri, 30 Oct 2020 14:56:20 +0000 (15:56 +0100)]
gnu: r-biocgraph: Update to 1.52.0.

* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.52.0.

3 years agognu: r-bioccasestudies: Update to 1.52.0.
zimoun [Fri, 30 Oct 2020 14:56:16 +0000 (15:56 +0100)]
gnu: r-bioccasestudies: Update to 1.52.0.

* gnu/packages/bioconductor.scm (r-bioccasestudies): Update to 1.52.0.

3 years agognu: r-ebarrays: Update to 2.54.0.
zimoun [Fri, 30 Oct 2020 14:56:13 +0000 (15:56 +0100)]
gnu: r-ebarrays: Update to 2.54.0.

* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.54.0.

3 years agognu: r-reactomepa: Update to 1.34.0.
zimoun [Fri, 30 Oct 2020 14:56:10 +0000 (15:56 +0100)]
gnu: r-reactomepa: Update to 1.34.0.

* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.34.0.

3 years agognu: r-graphite: Update to 1.36.0.
zimoun [Fri, 30 Oct 2020 14:56:07 +0000 (15:56 +0100)]
gnu: r-graphite: Update to 1.36.0.

* gnu/packages/bioconductor.scm (r-graphite): Update to 1.36.0.

3 years agognu: r-biobroom: Update to 1.22.0.
zimoun [Fri, 30 Oct 2020 14:56:04 +0000 (15:56 +0100)]
gnu: r-biobroom: Update to 1.22.0.

* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.22.0.

3 years agognu: r-bioassayr: Update to 1.28.0.
zimoun [Fri, 30 Oct 2020 14:56:01 +0000 (15:56 +0100)]
gnu: r-bioassayr: Update to 1.28.0.

* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.0.

3 years agognu: r-chemminer: Update to 3.42.0.
zimoun [Fri, 30 Oct 2020 14:55:58 +0000 (15:55 +0100)]
gnu: r-chemminer: Update to 3.42.0.

* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.0.

3 years agognu: r-bigpint: Update to 1.6.0.
zimoun [Fri, 30 Oct 2020 14:55:55 +0000 (15:55 +0100)]
gnu: r-bigpint: Update to 1.6.0.

* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.6.0.

3 years agognu: r-bigmemoryextras: Update to 1.38.0.
zimoun [Fri, 30 Oct 2020 14:55:52 +0000 (15:55 +0100)]
gnu: r-bigmemoryextras: Update to 1.38.0.

* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.38.0.

3 years agognu: r-biggr: Update to 1.26.0.
zimoun [Fri, 30 Oct 2020 14:55:49 +0000 (15:55 +0100)]
gnu: r-biggr: Update to 1.26.0.

* gnu/packages/bioconductor.scm (r-biggr): Update to 1.26.0.

3 years agognu: r-hyperdraw: Update to 1.42.0.
zimoun [Fri, 30 Oct 2020 14:55:46 +0000 (15:55 +0100)]
gnu: r-hyperdraw: Update to 1.42.0.

* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.42.0.