Ricardo Wurmus [Sat, 14 Dec 2019 15:39:31 +0000 (16:39 +0100)]
gnu: Add r-ncdfflow.
* gnu/packages/bioconductor.scm (r-ncdfflow): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 15:38:06 +0000 (16:38 +0100)]
gnu: Add r-cytolib.
* gnu/packages/bioconductor.scm (r-cytolib): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 15:37:36 +0000 (16:37 +0100)]
gnu: Add r-multidataset.
* gnu/packages/bioconductor.scm (r-multidataset): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 15:37:03 +0000 (16:37 +0100)]
gnu: Add r-biocversion.
* gnu/packages/bioconductor.scm (r-biocversion): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 15:36:05 +0000 (16:36 +0100)]
gnu: Add r-qqman.
* gnu/packages/cran.scm (r-qqman): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 14:54:50 +0000 (15:54 +0100)]
guix: Upgrade to Bioconductor 3.10.
* guix/build-system/r.scm (bioconductor-uri): Switch to version 3.10.
* guix/import/cran.scm (%bioconductor-version): Same.
Ricardo Wurmus [Sat, 14 Dec 2019 14:52:29 +0000 (15:52 +0100)]
gnu: Add r-idpmisc.
* gnu/packages/cran.scm (r-idpmisc): New variable.
Björn Höfling [Sun, 15 Dec 2019 11:31:35 +0000 (12:31 +0100)]
gnu: java-svg-salamander: Return #t from snippet.
* gnu/packages/java.scm (java-svg-salamander)[origin]:
Return #t from snippet.
Brett Gilio [Sun, 15 Dec 2019 00:46:06 +0000 (18:46 -0600)]
gnu: emacs-cider: Update home-page.
* gnu/packages/emacs-xyz.scm (emacs-cider)[home-page]: Change to https://cider.mx/.
Brett Gilio [Sun, 15 Dec 2019 00:45:22 +0000 (18:45 -0600)]
gnu: emacs-cider: Update to 0.23.0.
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 0.23.0.
[propagated-inputs]: Add emacs-seq, emacs-parseedn.
Brett Gilio [Sun, 15 Dec 2019 00:44:50 +0000 (18:44 -0600)]
gnu: Add emacs-parseedn.
* gnu/packages/emacs-xyz.scm (emacs-parseedn): New variable.
Brett Gilio [Sun, 15 Dec 2019 00:44:25 +0000 (18:44 -0600)]
gnu: Add emacs-parseclj.
* gnu/packages/emacs-xyz.scm (emacs-parseclj): New variable.
Konrad Hinsen [Fri, 13 Dec 2019 12:53:47 +0000 (13:53 +0100)]
gnu: Add gfortran-toolchain
* gnu/packages/commencement.scm: (gfortran-toolchain): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Ludovic Courtès [Sat, 14 Dec 2019 23:19:17 +0000 (00:19 +0100)]
gnu: bootloaders: Avoid #:select on (gnu packages …) module.
* gnu/packages/bootloaders.scm: Remove use of #:select.
Ludovic Courtès [Sat, 14 Dec 2019 23:11:30 +0000 (00:11 +0100)]
base64: Do not use (rnrs).
* guix/base64.scm: Remove #:use-module clauses for (rnrs) and (srfi
srfi-13). Add other #:use-module clauses.
(fxbit-field): Define as an alias for 'bit-field.
(fx=?, fx+, mod): New aliases.
(assert): New macro.
Ludovic Courtès [Sat, 14 Dec 2019 13:59:32 +0000 (14:59 +0100)]
challenge: Fix type mismatch when comparing to a local hash.
* guix/scripts/challenge.scm (call-with-mismatches)[narinfo1]: When
LOCAL-HASH is true, call 'narinfo-hash->sha256' and use 'bytevector=?'
instead of 'string=?'.
Brett Gilio [Sat, 14 Dec 2019 20:07:22 +0000 (14:07 -0600)]
gnu: emacs-telega: Update to 0.5.3-1.
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.3-1.
[version]: Correct the version number used in the package elisp code itself.
Alex Griffin [Sat, 14 Dec 2019 18:34:59 +0000 (12:34 -0600)]
gnu: Add htmlcxx.
* gnu/packages/web.scm (htmlcxx): New variable.
Brett Gilio [Sat, 14 Dec 2019 19:06:07 +0000 (13:06 -0600)]
gnu: emacs-doom-themes: Update to 2.1.6-2.
* gnu/packages/emacs-xyz.scm (emacs-doom-themes): Update to 2.1.6-2.
[arguments]: Disable byte-compilation regarding issue in upstream.
<https://github.com/hlissner/emacs-doom-themes/issues/314>.
Julien Lepiller [Sat, 14 Dec 2019 16:42:33 +0000 (17:42 +0100)]
gnu: josm: Update to 15553.
* gnu/packages/geo.scm (josm): Update to 15553.
Mathieu Othacehe [Sat, 14 Dec 2019 16:37:23 +0000 (17:37 +0100)]
gnu: Add u-boot-pine64-lts-bootloader.
* gnu/bootloader/u-boot.scm (u-boot-pine64-lts-bootloader): New variable.
Mathieu Othacehe [Sat, 14 Dec 2019 16:35:02 +0000 (17:35 +0100)]
gnu: bootloaders: Fix make-u-boot-sunxi64-package cross-compilation.
* gnu/packages/bootloaders.scm (make-u-boot-sunxi64-package)[arguments]:
Search in native-inputs to fix cross-compilation.
Mathieu Othacehe [Sat, 14 Dec 2019 16:34:28 +0000 (17:34 +0100)]
gnu: Add u-boot-pine64-lts.
* gnu/packages/bootloaders.scm (u-boot-pine64-lts): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 12:34:53 +0000 (13:34 +0100)]
import: cran: Recognize LGPL 2.1+.
* guix/import/cran.scm (string->license): Add case for lgpl2.1+.
Ricardo Wurmus [Sat, 14 Dec 2019 12:34:32 +0000 (13:34 +0100)]
gnu: Add r-adamethods.
* gnu/packages/cran.scm (r-adamethods): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 12:34:09 +0000 (13:34 +0100)]
gnu: Add r-anthropometry.
* gnu/packages/cran.scm (r-anthropometry): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 12:32:49 +0000 (13:32 +0100)]
gnu: Add r-shapes.
* gnu/packages/cran.scm (r-shapes): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 12:32:39 +0000 (13:32 +0100)]
gnu: Add r-archetypes.
* gnu/packages/cran.scm (r-archetypes): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 12:32:19 +0000 (13:32 +0100)]
gnu: Add r-depth.
* gnu/packages/cran.scm (r-depth): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 12:32:02 +0000 (13:32 +0100)]
gnu: Add r-icge.
* gnu/packages/cran.scm (r-icge): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 12:31:40 +0000 (13:31 +0100)]
gnu: Add r-biclust.
* gnu/packages/cran.scm (r-biclust): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 12:31:21 +0000 (13:31 +0100)]
gnu: Add r-flexclust.
* gnu/packages/cran.scm (r-flexclust): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 12:30:50 +0000 (13:30 +0100)]
gnu: Add r-additivitytests.
* gnu/packages/cran.scm (r-additivitytests): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 10:29:56 +0000 (11:29 +0100)]
gnu: Add r-tolerance.
* gnu/packages/cran.scm (r-tolerance): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 10:29:40 +0000 (11:29 +0100)]
gnu: Add r-univoutl.
* gnu/packages/cran.scm (r-univoutl): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 10:29:24 +0000 (11:29 +0100)]
gnu: Add r-adagio.
* gnu/packages/cran.scm (r-adagio): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 10:28:50 +0000 (11:28 +0100)]
gnu: Add r-adabag.
* gnu/packages/cran.scm (r-adabag): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 10:28:35 +0000 (11:28 +0100)]
gnu: Add r-acuityview.
* gnu/packages/cran.scm (r-acuityview): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 10:28:11 +0000 (11:28 +0100)]
gnu: Add r-imager.
* gnu/packages/cran.scm (r-imager): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:57:29 +0000 (10:57 +0100)]
gnu: Add r-readbitmap.
* gnu/packages/cran.scm (r-readbitmap): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:57:13 +0000 (10:57 +0100)]
gnu: Add r-bmp.
* gnu/packages/cran.scm (r-bmp): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:56:56 +0000 (10:56 +0100)]
gnu: Add r-actuar.
* gnu/packages/cran.scm (r-actuar): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:56:41 +0000 (10:56 +0100)]
gnu: Add r-expint.
* gnu/packages/cran.scm (r-expint): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:56:22 +0000 (10:56 +0100)]
gnu: Add r-actogrammr.
* gnu/packages/cran.scm (r-actogrammr): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:56:03 +0000 (10:56 +0100)]
gnu: Add r-activpalprocessing.
* gnu/packages/cran.scm (r-activpalprocessing): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:55:14 +0000 (10:55 +0100)]
gnu: Add r-activpal.
* gnu/packages/cran.scm (r-activpal): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:55:01 +0000 (10:55 +0100)]
gnu: Add r-activityindex.
* gnu/packages/cran.scm (r-activityindex): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:54:49 +0000 (10:54 +0100)]
gnu: Add r-activitycounts.
* gnu/packages/cran.scm (r-activitycounts): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:54:34 +0000 (10:54 +0100)]
gnu: Add r-activedriver.
* gnu/packages/cran.scm (r-activedriver): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:52:27 +0000 (10:52 +0100)]
gnu: Add r-actigraphy.
* gnu/packages/cran.scm (r-actigraphy): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:11:09 +0000 (10:11 +0100)]
gnu: Add r-fda.
* gnu/packages/cran.scm (r-fda): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:10:56 +0000 (10:10 +0100)]
gnu: Add r-actfrag.
* gnu/packages/cran.scm (r-actfrag): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:10:38 +0000 (10:10 +0100)]
gnu: Add r-ineq.
* gnu/packages/cran.scm (r-ineq): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:07:48 +0000 (10:07 +0100)]
gnu: Add r-actcd.
* gnu/packages/cran.scm (r-actcd): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:07:26 +0000 (10:07 +0100)]
gnu: Add r-gdina.
* gnu/packages/cran.scm (r-gdina): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:07:18 +0000 (10:07 +0100)]
gnu: Add r-alabama.
* gnu/packages/cran.scm (r-alabama): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 09:07:08 +0000 (10:07 +0100)]
gnu: Add r-acswr.
* gnu/packages/cran.scm (r-acswr): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 08:22:36 +0000 (09:22 +0100)]
gnu: Add r-acss.
* gnu/packages/cran.scm (r-acss): New variable.
Ricardo Wurmus [Sat, 14 Dec 2019 08:22:21 +0000 (09:22 +0100)]
gnu: Add r-acss-data.
* gnu/packages/cran.scm (r-acss-data): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:12:24 +0000 (23:12 +0100)]
gnu: Add r-acs.
* gnu/packages/cran.scm (r-acs): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:12:12 +0000 (23:12 +0100)]
gnu: Add r-acrt.
* gnu/packages/cran.scm (r-acrt): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:11:55 +0000 (23:11 +0100)]
gnu: Add r-acrosstic.
* gnu/packages/cran.scm (r-acrosstic): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:11:26 +0000 (23:11 +0100)]
gnu: Add r-treeclust.
* gnu/packages/cran.scm (r-treeclust): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:10:23 +0000 (23:10 +0100)]
gnu: Add r-acrm.
* gnu/packages/cran.scm (r-acrm): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:10:09 +0000 (23:10 +0100)]
gnu: Add r-dummies.
* gnu/packages/cran.scm (r-dummies): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:09:52 +0000 (23:09 +0100)]
gnu: Add r-kernelfactory.
* gnu/packages/cran.scm (r-kernelfactory): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:09:40 +0000 (23:09 +0100)]
gnu: Add r-genalg.
* gnu/packages/cran.scm (r-genalg): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:09:24 +0000 (23:09 +0100)]
gnu: Add r-ada.
* gnu/packages/cran.scm (r-ada): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:08:51 +0000 (23:08 +0100)]
gnu: Add r-acp.
* gnu/packages/cran.scm (r-acp): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:08:25 +0000 (23:08 +0100)]
gnu: Add r-acousticndlcoder.
* gnu/packages/cran.scm (r-acousticndlcoder): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:05:27 +0000 (23:05 +0100)]
gnu: Add r-seewave.
* gnu/packages/cran.scm (r-seewave): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:05:18 +0000 (23:05 +0100)]
gnu: Add r-tuner.
* gnu/packages/cran.scm (r-tuner): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:03:31 +0000 (23:03 +0100)]
gnu: Add r-acopula.
* gnu/packages/cran.scm (r-acopula): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:03:13 +0000 (23:03 +0100)]
gnu: Add r-acnr.
* gnu/packages/cran.scm (r-acnr): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:02:28 +0000 (23:02 +0100)]
gnu: Add r-r-devices.
* gnu/packages/cran.scm (r-r-devices): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 22:01:20 +0000 (23:01 +0100)]
gnu: Add r-r-filesets.
* gnu/packages/cran.scm (r-r-filesets): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 21:57:59 +0000 (22:57 +0100)]
gnu: Add r-activepathways.
* gnu/packages/bioconductor.scm (r-activepathways): New variable.
Mark H Weaver [Sat, 14 Dec 2019 04:09:39 +0000 (23:09 -0500)]
gnu: linux-libre: Update to 5.3.16.
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.16.
(linux-libre-5.3-pristine-source): Update hash.
Mark H Weaver [Sat, 14 Dec 2019 04:08:25 +0000 (23:08 -0500)]
gnu: linux-libre@4.19: Update to 4.19.89.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.89.
(linux-libre-4.19-pristine-source): Update hash.
Ricardo Wurmus [Fri, 13 Dec 2019 21:53:19 +0000 (22:53 +0100)]
gnu: bluez-alsa: Update to 2.0.0.
* gnu/packages/audio.scm (bluez-alsa): Update to 2.0.0.
[source]: Use git-file-name.
[arguments]: Override ALSA plugin directory and dbus configuration directory.
[inputs]: Add dbus.
Ricardo Wurmus [Fri, 13 Dec 2019 18:26:05 +0000 (19:26 +0100)]
gnu: Add r-r-huge.
* gnu/packages/cran.scm (r-r-huge): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 18:25:07 +0000 (19:25 +0100)]
gnu: Add r-acmer.
* gnu/packages/cran.scm (r-acmer): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 18:24:31 +0000 (19:24 +0100)]
gnu: Add r-acmeeqtl.
* gnu/packages/cran.scm (r-acmeeqtl): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 18:10:33 +0000 (19:10 +0100)]
gnu: Add r-filematrix.
* gnu/packages/cran.scm (r-filematrix): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 18:10:05 +0000 (19:10 +0100)]
gnu: Add r-acm4r.
* gnu/packages/cran.scm (r-acm4r): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:59:33 +0000 (18:59 +0100)]
gnu: Add r-acid.
* gnu/packages/cran.scm (r-acid): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:59:02 +0000 (18:59 +0100)]
gnu: Add r-gamlss.
* gnu/packages/cran.scm (r-gamlss): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:56:55 +0000 (18:56 +0100)]
gnu: Add r-gamlss-data.
* gnu/packages/cran.scm (r-gamlss-data): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:56:39 +0000 (18:56 +0100)]
gnu: Add r-acfmperiod.
* gnu/packages/cran.scm (r-acfmperiod): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:56:16 +0000 (18:56 +0100)]
gnu: Add r-acet.
* gnu/packages/cran.scm (r-acet): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:53:16 +0000 (18:53 +0100)]
gnu: Add r-acebayes.
* gnu/packages/cran.scm (r-acebayes): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:53:00 +0000 (18:53 +0100)]
gnu: Add r-lhs.
* gnu/packages/cran.scm (r-lhs): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:52:39 +0000 (18:52 +0100)]
gnu: Add r-randtoolbox.
* gnu/packages/cran.scm (r-randtoolbox): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:51:44 +0000 (18:51 +0100)]
gnu: Add r-rngwell.
* gnu/packages/cran.scm (r-rngwell): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:51:11 +0000 (18:51 +0100)]
gnu: Add r-ace2fastq.
* gnu/packages/cran.scm (r-ace2fastq): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:50:49 +0000 (18:50 +0100)]
gnu: Add r-accsda.
* gnu/packages/cran.scm (r-accsda): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:50:26 +0000 (18:50 +0100)]
gnu: Add r-sparselda.
* gnu/packages/cran.scm (r-sparselda): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:50:09 +0000 (18:50 +0100)]
gnu: Add r-elasticnet.
* gnu/packages/cran.scm (r-elasticnet): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:49:53 +0000 (18:49 +0100)]
gnu: Add r-mda.
* gnu/packages/cran.scm (r-mda): New variable.
Ricardo Wurmus [Fri, 13 Dec 2019 17:49:29 +0000 (18:49 +0100)]
gnu: Add r-accrued.
* gnu/packages/cran.scm (r-accrued): New variable.
HCoop / jackhill / guix / guix.git / log