Marius Bakke [Thu, 22 Mar 2018 13:30:19 +0000 (14:30 +0100)]
gnu: nmap: Update to 7.70.
* gnu/packages/admin.scm (nmap): Update to 7.70.
[source](snippet): End on #t.
[inputs]: Add ZLIB.
Marius Bakke [Thu, 22 Mar 2018 13:16:36 +0000 (14:16 +0100)]
gnu: talloc: Update to 2.1.12.
* gnu/packages/samba.scm (talloc): Update to 2.1.12.
Marius Bakke [Thu, 22 Mar 2018 13:14:09 +0000 (14:14 +0100)]
gnu: certbot: Update to 0.22.2.
* gnu/packages/tls.scm (python-acme, certbot): Update to 0.22.2.
Marius Bakke [Thu, 22 Mar 2018 13:02:11 +0000 (14:02 +0100)]
gnu: python-cryptography: Update to 2.2.1.
* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.2.1.
Ludovic Courtès [Thu, 22 Mar 2018 11:54:31 +0000 (12:54 +0100)]
publish: Always build a new derivation for the "/log/NAME" test.
Fixes <https://bugs.gnu.org/30868>.
Reported by Martin Castillo <castilma@uni-bremen.de>.
* tests/publish.scm ("/log/NAME"): Use #$(random-text) in the builder.
Ludovic Courtès [Thu, 22 Mar 2018 11:51:23 +0000 (12:51 +0100)]
publish: Add test for non-GET queries.
* tests/publish.scm ("non-GET query"): New test.
Maxim Cournoyer [Mon, 5 Mar 2018 04:03:26 +0000 (23:03 -0500)]
gnu: Add supercollider.
* gnu/packages/audio.scm (supercollider): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Maxim Cournoyer [Tue, 6 Mar 2018 01:15:35 +0000 (20:15 -0500)]
gnu: yaml-cpp: Update to 0.6.1.
* gnu/packages/serialization.scm (yaml-cpp): Update to 0.6.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Maxim Cournoyer [Mon, 5 Mar 2018 03:50:04 +0000 (22:50 -0500)]
gnu: Add boost-sync.
* gnu/packages/boost.scm (boost-sync): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Maxim Cournoyer [Sun, 11 Mar 2018 04:09:56 +0000 (23:09 -0500)]
doc: Add index entries for realtime and jackd in the manual.
* doc/guix.texi (Base Services): Add realtime and jackd indices to the
`pam-limits-service' service, as the examples shows how they can be
configured.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Ludovic Courtès [Thu, 22 Mar 2018 10:42:22 +0000 (11:42 +0100)]
gnu: shepherd: Update to 0.4.0.
* gnu/packages/admin.scm (shepherd): Update to 0.4.0. Remove patches.
* gnu/packages/patches/shepherd-close-fds.patch,
gnu/packages/patches/shepherd-herd-status-sorted.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/services/admin.scm (%default-rotations): Remove
/var/log/shepherd.log.
Ludovic Courtès [Thu, 22 Mar 2018 10:18:26 +0000 (11:18 +0100)]
services: rottlog: Add /var/log/debug to '%default-rotations'.
* gnu/services/admin.scm (%rotated-files): Add "/var/log/debug".
Mark H Weaver [Thu, 22 Mar 2018 00:48:49 +0000 (20:48 -0400)]
gnu: linux-libre: Update to 4.15.12.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.12.
(%linux-libre-hash): Update hash.
Mark H Weaver [Thu, 22 Mar 2018 00:47:53 +0000 (20:47 -0400)]
gnu: linux-libre@4.14: Update to 4.14.29.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.29.
(%linux-libre-4.14-hash): Update hash.
Vasile Dumitrascu [Wed, 21 Mar 2018 20:42:54 +0000 (21:42 +0100)]
gnu: emacs-deferred: Update to 0.5.1.
* gnu/packages/emacs.scm (emacs-deferred): Update to 0.5.1.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Vasile Dumitrascu [Wed, 21 Mar 2018 20:18:04 +0000 (21:18 +0100)]
gnu: emacs-clojure-mode: Update to 5.6.1.
* gnu/packages/emacs.scm (emacs-clojure-mode): Update to 5.6.1.
Leo Famulari [Wed, 21 Mar 2018 22:23:15 +0000 (18:23 -0400)]
Fix copyright notice for Nils Gillmann.
This is a followup to commit
af23710ff522bb4e6cedf841c4fb977d96c9d8b3.
* gnu/packages/linux.scm: Fix name and email address for Nils Gillmann.
Leo Famulari [Wed, 21 Mar 2018 16:18:00 +0000 (12:18 -0400)]
gnu: mpd: Update to 0.20.18.
* gnu/packages/mpd.scm (mpd): Update to 0.20.18.
Tobias Geerinckx-Rice [Fri, 9 Mar 2018 01:40:28 +0000 (02:40 +0100)]
gnu: Add tinyscheme.
* gnu/packages/scheme.scm (tinyscheme): New public variable.
Tobias Geerinckx-Rice [Wed, 21 Mar 2018 15:59:31 +0000 (16:59 +0100)]
gnu: libosinfo: Update usb.ids.
This follows up commit
0def9120882f90372fd6bb2e80e8330d67745610, which
tried to use the CVS ID as the SVN revision, which unfortunately doesn't
work.
* gnu/packages/virtualization.scm (libosinfo)[native-inputs]: Update
revision and hash for ‘usb.ids’.
Leo Famulari [Wed, 21 Mar 2018 15:43:00 +0000 (11:43 -0400)]
gnu: rawtherapee: Update to 5.4.
* gnu/packages/photo.scm (rawtherapee): Update to 5.4.
Ricardo Wurmus [Wed, 21 Mar 2018 10:52:56 +0000 (11:52 +0100)]
gnu: pigx-chipseq: Update to 0.0.10.
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.10.
[inputs]: Remove r-rcas and duplicate of snakemake; add r-biocparallel,
r-biostrings, r-dplyr, r-genomicalignments, rsamtools, r-s4vectors, r-tibble,
r-tidyr, r-htmlwidgets, and r-rmarkdown.
Danny Milosavljevic [Wed, 21 Mar 2018 07:20:38 +0000 (08:20 +0100)]
gnu: libosinfo: Fix URL for usb.ids.
Fixes <http://bugs.gnu.org/30890>.
* gnu/packages/virtualization.scm (libosinfo)[native-inputs]: Fix URL of
"usb.ids".
Danny Milosavljevic [Wed, 21 Mar 2018 00:34:34 +0000 (01:34 +0100)]
gnu: texlive-fonts-amsfonts: Make build reproducible.
* gnu/packages/tex.scm (texlive-fonts-amsfonts)[arguments]<#:phases>[build]:
Make build reproducible.
Leo Famulari [Mon, 19 Mar 2018 21:13:26 +0000 (17:13 -0400)]
gnu: util-linux: Fix CVE-2018-7738 without grafting.
* gnu/packages/linux.scm (util-linux)[replacement]: Remove field.
(util-linux-2.31.1): New variable.
* gnu/system.scm (%base-packages): Use util-linux-2.31.1.
Tobias Geerinckx-Rice [Tue, 20 Mar 2018 18:41:05 +0000 (19:41 +0100)]
gnu: gparted: Update to 0.31.0.
* gnu/packages/disk.scm (gparted): Update to 0.31.0.
Tobias Geerinckx-Rice [Tue, 20 Mar 2018 16:49:01 +0000 (17:49 +0100)]
gnu: coq-flocq: Update phase style.
* gnu/packages/ocaml.scm (coq-flocq)[arguments]: Substitute INVOKE for
SYSTEM* and end all phases with an explicit #t.
Tobias Geerinckx-Rice [Tue, 20 Mar 2018 05:15:52 +0000 (06:15 +0100)]
gnu: leocad: Use HTTPS home page.
* gnu/packages/lego.scm (leocad)[home-page]: Use HTTPS.
Tobias Geerinckx-Rice [Tue, 20 Mar 2018 05:14:28 +0000 (06:14 +0100)]
gnu: leocad: Update phase style.
* gnu/packages/lego.scm (leocad)[arguments]: Substitute INVOKE for
SYSTEM* and end all phases with an explicit #t.
Tobias Geerinckx-Rice [Tue, 20 Mar 2018 01:03:27 +0000 (02:03 +0100)]
gnu: leocad: Update to 18.02.
* gnu/packages/lego.scm (leocad): Update to 18.02.
Tobias Geerinckx-Rice [Tue, 20 Mar 2018 15:48:53 +0000 (16:48 +0100)]
gnu: gmp-ecm: Update to 7.0.4.
* gnu/packages/algebra.scm (gmp-ecm): Update to 7.0.4.
[source]: Use predictable URI.
Tobias Geerinckx-Rice [Tue, 20 Mar 2018 15:45:45 +0000 (16:45 +0100)]
gnu: r-spams: Use predictable source URI.
* gnu/packages/statistics.scm (r-spams)[source]: Use predictable
URI.
Ricardo Wurmus [Tue, 20 Mar 2018 18:07:59 +0000 (19:07 +0100)]
gnu: pigx-chipseq: Update to 0.0.9.
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.9.
[inputs]: Add coreutils and grep.
Vijayalakshmi [Mon, 19 Mar 2018 16:50:25 +0000 (22:20 +0530)]
gnu: Add python-logwrap.
* gnu/packages/python.scm (python-logwrap): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Oleg Pykhalov [Tue, 20 Mar 2018 18:42:03 +0000 (21:42 +0300)]
gnu: python-ptyprocess: Update source URL.
* gnu/packages/python.scm (python-ptyprocess)[origin](source): Update URL.
Marius Bakke [Tue, 20 Mar 2018 18:23:34 +0000 (19:23 +0100)]
gnu: rofi: Update source hash.
The tarball was updated in-place with a bugfix; see
<https://github.com/DaveDavenport/rofi/issues/782>.
* gnu/packages/xdisorg.scm (rofi)[source](sha256): Adjust hash.
[arguments]: Remove phase 'add-missing-configuration-files'.
ng0 [Tue, 20 Mar 2018 15:39:45 +0000 (15:39 +0000)]
Correct name and Email for ng0.
* .mailmap: Correct name and Email for ng0.
* Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm,
gnu/packages/emacs.scm, gnu/packages/enlightenment.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm,
gnu/packages/games.scm, gnu/packages/gl.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm,
gnu/packages/gtk.scm, gnu/packages/guile-wm.scm,
gnu/packages/guile.scm, gnu/packages/haskell-check.scm,
gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm,
gnu/packages/image-viewers.scm, gnu/packages/image.scm,
gnu/packages/irc.scm, gnu/packages/language.scm,
gnu/packages/libcanberra.scm, gnu/packages/linux.scm,
gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm,
gnu/packages/mail.scm, gnu/packages/markup.scm,
gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm,
gnu/packages/music.scm, gnu/packages/ncurses.scm,
gnu/packages/networking.scm, gnu/packages/nickle.scm,
gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-crypto.scm, gnu/packages/python-web.scm,
gnu/packages/python.scm, gnu/packages/qt.scm,
gnu/packages/ruby.scm, gnu/packages/rust.scm,
gnu/packages/scheme.scm, gnu/packages/serialization.scm,
gnu/packages/shells.scm, gnu/packages/ssh.scm,
gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm,
gnu/packages/tls.scm, gnu/packages/tor.scm,
gnu/packages/version-control.scm, gnu/packages/video.scm,
gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm,
gnu/packages/xfce.scm, gnu/packages/xml.scm,
gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm,
guix/licenses.scm: Likewise.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
Kei Kebreau [Tue, 20 Mar 2018 14:07:00 +0000 (10:07 -0400)]
gnu: ruby-sanitize: Update to 4.6.3.
This fixes CVE-2018-3740.
* gnu/packages/ruby.scm (ruby-sanitize): Update to 4.6.3.
宋文武 [Tue, 20 Mar 2018 13:11:00 +0000 (21:11 +0800)]
gnu: cdogs-sdl: Update to commit
bab20313.
Fixes <https://bugs.gnu.org/30623>.
* gnu/packages/games.scm (cdogs-sdl): Update to commit
bab2031369b9ea2dbeb7eedbde10a43dd8ca83db.
[source]: Use git-fetch.
Sahithi Yarlagadda [Tue, 20 Mar 2018 02:08:55 +0000 (07:38 +0530)]
gnu: Add r-dyn.
* gnu/packages/cran.scm (r-dyn): New variable.
Ricardo Wurmus [Tue, 20 Mar 2018 13:56:05 +0000 (14:56 +0100)]
gnu: pigx-bsseq: Update to 0.0.8.
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.8.
Marius Bakke [Tue, 20 Mar 2018 13:13:05 +0000 (14:13 +0100)]
Merge branch 'staging'
Ricardo Wurmus [Tue, 20 Mar 2018 11:16:37 +0000 (12:16 +0100)]
gnu: pigx-rnaseq: Update to 0.0.3.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.3.
[inputs]: Add gzip.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 22:00:01 +0000 (23:00 +0100)]
gnu: dnsmasq: Fix description typos.
* gnu/packages/dns.scm (dnsmasq)[description]: Fix some typos.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 21:58:48 +0000 (22:58 +0100)]
gnu: dnsmasq: Update to 2.79.
* gnu/packages/dns.scm (dnsmasq): Update to 2.79.
Marius Bakke [Tue, 20 Mar 2018 00:40:07 +0000 (01:40 +0100)]
gnu: certbot: Update to 0.22.1.
* gnu/packages/tls.scm (python-acme, certbot): Update to 0.22.1.
Marius Bakke [Tue, 20 Mar 2018 00:25:10 +0000 (01:25 +0100)]
gnu: python-cryptography: Update to 2.2.
* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.2.
Marius Bakke [Tue, 20 Mar 2018 00:24:48 +0000 (01:24 +0100)]
gnu: imlib2: Update to 1.5.1.
* gnu/packages/image.scm (imlib2): Update to 1.5.1.
Marius Bakke [Tue, 20 Mar 2018 00:09:16 +0000 (01:09 +0100)]
gnu: imagemagick: Update to 6.9.9-39.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-39.
Marius Bakke [Tue, 20 Mar 2018 00:02:13 +0000 (01:02 +0100)]
gnu: zziplib: Correct license.
* gnu/packages/compression.scm (zziplib)[license]: Add MPL1.1.
Marius Bakke [Mon, 19 Mar 2018 23:56:04 +0000 (00:56 +0100)]
gnu: zziplib: Update to 0.13.69.
* gnu/packages/compression.scm (zziplib): Update to 0.13.69.
[home-page]: Use new GitHub home.
[source](uri): Adjust accordingly.
[arguments]: Remove.
Marius Bakke [Mon, 19 Mar 2018 23:27:07 +0000 (00:27 +0100)]
gnu: rofi: Update to 1.5.1.
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.1.
Marius Bakke [Mon, 19 Mar 2018 23:20:59 +0000 (00:20 +0100)]
Revert "Revert "gnu: patchelf: Update argument phase.""
This change only affects armhf, which doesn't use PatchELF. My bad!
This reverts commit
b1d096f869ed53b84486855d73c7e9070fdf3ae2.
Marius Bakke [Mon, 19 Mar 2018 23:03:05 +0000 (00:03 +0100)]
Revert "build-system/meson: Use 'target-arm32?' for armhf-linux case."
This requires adding (guix utils) to the build inputs, and causes too many
rebuilds for now.
This reverts commit
24a2e9172a2d8970d57865c6130f2184385183a3.
Marius Bakke [Mon, 19 Mar 2018 22:46:25 +0000 (23:46 +0100)]
Revert "gnu: patchelf: Update argument phase."
It causes too many rebuilds this late in the 'staging' cycle.
This reverts commit
c1d1cd817c7ab8d99e962e286c207943765a8e8f.
Leo Famulari [Mon, 19 Mar 2018 22:55:50 +0000 (18:55 -0400)]
gnu: uwsgi: Update to 2.0.17 [fixes CVE-2018-7490].
* gnu/packages/web.scm (uwsgi): Update to 2.0.17.
[source]: Use HTTPS URL.
Ludovic Courtès [Mon, 19 Mar 2018 22:16:48 +0000 (23:16 +0100)]
gnu: mcron: Update to 1.1 and deprecate "mcron2".
* gnu/packages/guile.scm (mcron): Update to 1.1.
[native-inputs]: Add TZDATA-FOR-TESTS.
[arguments]: New field.
(mcron2): Define using 'deprecated-package'.
* gnu/services/mcron.scm: Replace 'mcron2' with 'mcron'.
* doc/guix.texi (Scheduled Job Execution): Likewise.
* gnu/tests/base.scm (%mcron-os): Remove comment about mcron2.
Mark H Weaver [Mon, 19 Mar 2018 22:02:29 +0000 (18:02 -0400)]
gnu: linux-libre: Update to 4.15.11.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.11.
(%linux-libre-hash): Update hash.
Mark H Weaver [Mon, 19 Mar 2018 22:01:49 +0000 (18:01 -0400)]
gnu: linux-libre@4.14: Update to 4.14.28.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.28.
(%linux-libre-4.14-hash): Update hash.
Mark H Weaver [Mon, 19 Mar 2018 22:01:12 +0000 (18:01 -0400)]
gnu: linux-libre@4.9: Update to 4.9.88.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.88.
Mark H Weaver [Mon, 19 Mar 2018 22:00:37 +0000 (18:00 -0400)]
gnu: linux-libre@4.4: Update to 4.4.122.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.122.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 21:06:24 +0000 (22:06 +0100)]
gnu: weechat: Update to 2.1.
* gnu/packages/irc.scm (weechat): Update to 2.1.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 18:06:53 +0000 (19:06 +0100)]
gnu: perl-xml-compile-soap: Update to 3.24.
* gnu/packages/xml.scm (perl-xml-compile-soap): Update to 3.24.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 18:06:33 +0000 (19:06 +0100)]
gnu: perl-xml-simple: Update to 2.25.
* gnu/packages/xml.scm (perl-xml-simple): Update to 2.25.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 17:13:21 +0000 (18:13 +0100)]
gnu: perl-math-random-secure: Fix typo.
* gnu/packages/crypto.scm (perl-math-random-secure)[description]: Fix
the spelling of ‘millennia’.
Efraim Flashner [Mon, 19 Mar 2018 20:06:22 +0000 (22:06 +0200)]
build-system/meson: Use 'target-arm32?' for armhf-linux case.
* guix/build-system/meson.scm (lower, meson-build): Replace armhf-linux
detection with 'target-arm32?' macro.
Ricardo Wurmus [Mon, 19 Mar 2018 20:03:07 +0000 (21:03 +0100)]
gnu: pigx-bsseq: Update to 0.0.7.
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.7.
[inputs]: Add coreutils, sed, and grep.
Ricardo Wurmus [Mon, 19 Mar 2018 19:53:27 +0000 (20:53 +0100)]
gnu: bismark: Fix references to gunzip.
* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to
gunzip executable.
[inputs]: Add gzip.
Ricardo Wurmus [Mon, 19 Mar 2018 19:39:53 +0000 (20:39 +0100)]
gnu: pigx-scrnaseq: Update to 0.0.3.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.3.
[inputs]: Add coreutils and perl.
Efraim Flashner [Mon, 19 Mar 2018 19:44:50 +0000 (21:44 +0200)]
patchelf: Use 'https' for source uri.
* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri.
Efraim Flashner [Mon, 19 Mar 2018 19:44:50 +0000 (21:44 +0200)]
patchelf: Use 'https' for source uri.
* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri.
Efraim Flashner [Mon, 19 Mar 2018 19:43:09 +0000 (21:43 +0200)]
gnu: patchelf: Update argument phase.
* gnu/packages/elf.scm (patchelf)[arguments]: Use 'modify-phases'
syntax. Replace 'system*' with 'invoke'.
Efraim Flashner [Mon, 19 Mar 2018 19:33:29 +0000 (21:33 +0200)]
gnu: patchelf: Use 'target-arm32?' for armhf-linux case.
* gnu/packages/elf.scm (patchelf)[inputs]: Replace armhf-linux detection
logic with 'target-arm32?' macro.
[arguments]: Same.
Leo Famulari [Mon, 19 Mar 2018 16:17:24 +0000 (12:17 -0400)]
gnu: python-paramiko: Update to 2.1.5.
* gnu/packages/python-crypto.scm (python-paramiko, python2-paramiko):
Update to 2.1.5.
Leo Famulari [Mon, 19 Mar 2018 16:20:22 +0000 (12:20 -0400)]
gnu: python-pynacl: Update to 1.2.0.
* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.2.0.
[native-inputs]: Add python-hypothesis.
Ricardo Wurmus [Mon, 19 Mar 2018 15:55:08 +0000 (16:55 +0100)]
gnu: pigx: Update to 0.0.2.
* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.2.
Ricardo Wurmus [Mon, 19 Mar 2018 10:51:35 +0000 (11:51 +0100)]
gnu: r-rcas: Use ghc-pandoc-citeproc-with-pandoc-1.
* gnu/packages/bioinformatics.scm (r-rcas)[inputs]: Replace
ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 13:43:23 +0000 (14:43 +0100)]
gnu: bash-completion: Update to 2.8.
* gnu/packages/bash.scm (bash-completion): Update to 2.8.
* gnu/packages/patches/bash-completion-directories.patch: Update context.
Tobias Geerinckx-Rice [Mon, 19 Mar 2018 13:41:47 +0000 (14:41 +0100)]
gnu: hdparm: Update to 9.55.
* gnu/packages/linux.scm (hdparm): Update to 9.55.
Tobias Geerinckx-Rice [Sat, 17 Mar 2018 18:40:48 +0000 (19:40 +0100)]
gnu: libtirpc: Update to 1.0.3.
* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.3.
[source]: Remove patch.
* gnu/packages/patches/libtirpc-missing-headers.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Tobias Geerinckx-Rice [Sat, 17 Mar 2018 18:39:48 +0000 (19:39 +0100)]
gnu: libtirpc: Always return #t from phases.
* gnu/packages/onc-rpc.scm (libtirpc)[arguments]: End phase with #t.
Tobias Geerinckx-Rice [Sat, 17 Mar 2018 20:03:44 +0000 (21:03 +0100)]
gnu: perl-file-basedir: Update to 0.08.
* gnu/packages/freedesktop.scm (perl-file-basedir): Update to 0.08.
Tobias Geerinckx-Rice [Sat, 17 Mar 2018 17:58:40 +0000 (18:58 +0100)]
gnu: enlightenment: Update to 0.22.2.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.2.
Tobias Geerinckx-Rice [Sat, 17 Mar 2018 18:41:51 +0000 (19:41 +0100)]
gnu: python-oslo.utils: Update to 3.36.0.
* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.36.0.
Tobias Geerinckx-Rice [Sat, 17 Mar 2018 18:41:33 +0000 (19:41 +0100)]
gnu: python-oslo.i18n: Update to 3.20.0.
* gnu/packages/openstack.scm (python-oslo.i18n): Update to 3.20.0.
Tobias Geerinckx-Rice [Sat, 17 Mar 2018 18:03:56 +0000 (19:03 +0100)]
gnu: r-withr: Update to 2.1.2.
* gnu/packages/statistics.scm (r-withr): Update to 2.1.2.
Efraim Flashner [Mon, 19 Mar 2018 12:21:20 +0000 (14:21 +0200)]
gnu: tilda: Update to 1.4.1.
* gnu/packages/terminals.scm (tilda): Update to 1.4.1.
[arguments]: Rename 'autogen phase to 'bootstrap. Clean up 'bootstrap
phase.
Ricardo Wurmus [Mon, 19 Mar 2018 09:45:40 +0000 (10:45 +0100)]
gnu: pigx-chipseq: Update to 0.0.8.
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.8.
[inputs]: Add python-magic, python-xlrd, and trim-galore.
[arguments]: Disable tests.
Ricardo Wurmus [Mon, 19 Mar 2018 09:45:17 +0000 (10:45 +0100)]
gnu: pigx-scrnaseq: Use pandoc-1.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
Ricardo Wurmus [Mon, 19 Mar 2018 09:44:55 +0000 (10:44 +0100)]
gnu: pigx-bsseq: Use pandoc-1.
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
Ricardo Wurmus [Mon, 19 Mar 2018 09:44:32 +0000 (10:44 +0100)]
gnu: pigx-chipseq: Use pandoc-1.
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
Ricardo Wurmus [Mon, 19 Mar 2018 09:43:28 +0000 (10:43 +0100)]
gnu: pigx-rnaseq: Use pandoc-1.
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
Ricardo Wurmus [Mon, 19 Mar 2018 09:43:06 +0000 (10:43 +0100)]
gnu: Add ghc-pandoc-citeproc-with-pandoc-1.
* gnu/packages/haskell.scm (ghc-pandoc-citeproc-with-pandoc-1): New variable.
Marius Bakke [Mon, 19 Mar 2018 02:50:39 +0000 (03:50 +0100)]
Merge branch 'master' into staging
Eric Bavier [Fri, 16 Mar 2018 04:25:01 +0000 (23:25 -0500)]
git-download: Fix recursive checkouts.
* guix/git-download.scm (git-fetch)<build>: Fix match on INPUTS, which may
contain package outputs.
Vijayalakshmi Vedantham [Sun, 18 Mar 2018 19:09:05 +0000 (00:39 +0530)]
gnu: Add r-abbyyr.
* gnu/packages/cran.scm (r-abbyyr): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Ludovic Courtès [Sun, 18 Mar 2018 21:54:34 +0000 (22:54 +0100)]
glob: Add an extra glob pattern compilation stage.
* guix/glob.scm (compile-glob-pattern): Rename to...
(string->sglob): ... this.
(compile-sglob, string->compiled-sglob): New procedures.
(glob-match?): Replace '?, 'range, and 'set with a single clause.
* tests/glob.scm (test-compile-glob-pattern): Rename to...
(test-string->sglob): ... this. Adjust accordingly.
(test-glob-match): Use 'string->compiled-sglob' instead of
'compile-glob-pattern'.
* gnu/build/linux-modules.scm (read-module-aliases): Use
'string->compiled-sglob' instead of 'compile-glob-pattern'.
Ludovic Courtès [Fri, 16 Mar 2018 22:35:07 +0000 (23:35 +0100)]
glob: Support square brackets in patterns.
* guix/glob.scm (wildcard-indices): Remove.
(parse-bracket): New procedure.
(compile-glob-pattern): Rewrite. Support square brackets for sets and
ranges.
(glob-match?): Support sets and ranges.
* tests/glob.scm (test-compile-glob-pattern)
(test-glob-match): New macros.
Use them to rewrite the existing tests, and add new tests.
Ludovic Courtès [Sun, 18 Mar 2018 17:26:12 +0000 (18:26 +0100)]
linux-modules: 'load-linux-module*' honors BLACK-LIST in recursive calls.
* gnu/build/linux-modules.scm (load-linux-module*): Pass BLACK-LIST in
recursive call.
Ludovic Courtès [Wed, 14 Mar 2018 22:09:57 +0000 (23:09 +0100)]
linux-modules: Add 'current-kernel-directory'.
* gnu/build/linux-modules.scm (current-kernel-directory): New procedure.
(current-alias-file): Use it.
HCoop / jackhill / guix / guix.git / log