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[jackhill/guix/guix.git] / gnu / packages / bioinformatics.scm

2020-02-25	Ricardo Wurmus	gnu: jamm: Update to 1.0.7.6.	blob \| commitdiff \| raw
2020-02-19	Ricardo Wurmus	gnu: r-scran: Update to 1.14.6.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-hdf5array: Update to 1.14.2.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-gviz: Update to 1.30.3.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-rhtslib: Update to 1.18.1.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-genomicfeatures: Update to 1.38.2.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-rsamtools: Update to 2.2.2.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-limma: Update to 3.42.2.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-shortread: Update to 1.44.3.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-seurat: Update to 3.1.3.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-qtl: Update to 1.45-11.	blob \| commitdiff \| raw \| diff to current
2020-02-18	Efraim Flashner	gn: edirect: Update to 12.1.20190829.	blob \| commitdiff \| raw \| diff to current
2020-02-13	Marius Bakke	gnu: python2-pbcore: Remove python2-sphinx dependency.	blob \| commitdiff \| raw \| diff to current
2020-01-29	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2020-01-27	Ricardo Wurmus	gnu: r-gviz: Update to 1.30.1.	blob \| commitdiff \| raw \| diff to current
2020-01-27	Ricardo Wurmus	gnu: r-genomicfeatures: Update to 1.38.1.	blob \| commitdiff \| raw \| diff to current
2020-01-27	Ricardo Wurmus	gnu: r-s4vectors: Update to 0.24.3.	blob \| commitdiff \| raw \| diff to current
2020-01-27	Ricardo Wurmus	gnu: r-diversitree: Update to 0.9-13.	blob \| commitdiff \| raw \| diff to current
2020-01-27	Julien Lepiller	gnu: ocaml: Switch to ocaml 4.09 by default.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: Use HTTPS for (gnu packages bioinformatics) home...	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: r-gage: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: sra-tools: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: raxml: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: prodigal: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: miso: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: grit: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: express-beta-diversity: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: dendropy: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-20	Tobias Geerinckx...	gnu: Use HTTPS for bioconductor.org.	blob \| commitdiff \| raw \| diff to current
2020-01-19	Tobias Geerinckx...	gnu: edirect: Use HTTPS home page.	blob \| commitdiff \| raw \| diff to current
2020-01-16	Marius Bakke	gnu: kentutils: Build with OpenSSL 1.0.	blob \| commitdiff \| raw \| diff to current
2020-01-16	Ricardo Wurmus	gnu: r-delayedarray: Update to 0.12.2.	blob \| commitdiff \| raw \| diff to current
2020-01-16	Ricardo Wurmus	gnu: r-iranges: Update to 2.20.2.	blob \| commitdiff \| raw \| diff to current
2020-01-16	Ricardo Wurmus	gnu: r-s4vectors: Update to 0.24.2.	blob \| commitdiff \| raw \| diff to current
2020-01-16	Ricardo Wurmus	gnu: r-biocstyle: Update to 2.14.4.	blob \| commitdiff \| raw \| diff to current
2020-01-09	Efraim Flashner	gnu: smithwaterman: Update to 0.0.0-2.2610e25.	blob \| commitdiff \| raw \| diff to current
2020-01-09	Efraim Flashner	gnu: vcflib: Update to 1.0.1.	blob \| commitdiff \| raw \| diff to current
2020-01-09	Efraim Flashner	gnu: fastahack: Update to 1.0.0.	blob \| commitdiff \| raw \| diff to current
2020-01-09	Efraim Flashner	gnu: Add intervaltree.	blob \| commitdiff \| raw \| diff to current
2020-01-09	Efraim Flashner	gnu: tabixpp: Update to 1.1.0.	blob \| commitdiff \| raw \| diff to current
2020-01-09	Efraim Flashner	gnu: bwa: Install static library.	blob \| commitdiff \| raw \| diff to current
2020-01-03	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2020-01-03	Pierre Neidhardt	gnu: uglify-js: Move back next to sbcl-cl-uglify-js...	blob \| commitdiff \| raw \| diff to current
2019-12-27	Ricardo Wurmus	gnu: r-topgo: Update to 2.38.1.	blob \| commitdiff \| raw \| diff to current
2019-12-27	Ricardo Wurmus	gnu: r-summarizedexperiment: Update to 1.16.1.	blob \| commitdiff \| raw \| diff to current
2019-12-27	Ricardo Wurmus	gnu: r-delayedarray: Update to 0.12.1.	blob \| commitdiff \| raw \| diff to current
2019-12-27	Ricardo Wurmus	gnu: r-biocparallel: Update to 1.20.1.	blob \| commitdiff \| raw \| diff to current
2019-12-27	Ricardo Wurmus	gnu: r-shortread: Update to 1.44.1.	blob \| commitdiff \| raw \| diff to current
2019-12-23	Brett Gilio	gnu: python-bbknn: Update to 1.3.6.	blob \| commitdiff \| raw \| diff to current
2019-12-23	Mădălin Ionel Patrașcu	gnu: tophat: Build with GCC 5	blob \| commitdiff \| raw \| diff to current
2019-12-21	Mădălin Ionel Patrașcu	gnu: fastx-toolkit: Build with GCC 6	blob \| commitdiff \| raw \| diff to current
2019-12-20	Ricardo Wurmus	gnu: r-scater: Update to 1.14.6.	blob \| commitdiff \| raw \| diff to current
2019-12-18	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2019-12-17	Ricardo Wurmus	gnu: Add libsbml.	blob \| commitdiff \| raw \| diff to current
2019-12-17	Ricardo Wurmus	gnu: r-seurat: Update to 3.1.2.	blob \| commitdiff \| raw \| diff to current
2019-12-16	Ricardo Wurmus	gnu: python-gffutils: Update description.	blob \| commitdiff \| raw \| diff to current
2019-12-16	Mădălin Ionel Patrașcu	gnu: Add python-gffutils.	blob \| commitdiff \| raw \| diff to current
2019-12-16	Mădălin Ionel Patrașcu	gnu: python-pyfaidx: Update to 0.5.7.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-genefilter: Update to 1.68.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-deseq2: Update to 1.26.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-dexseq: Update to 1.32.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-annotationforge: Update to 1.28.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-rbgl: Update to 1.62.1.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-gseabase: Update to 1.48.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-category: Update to 2.52.1.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-gostats: Update to 2.52.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-shortread: Update to 1.44.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-systempiper: Update to 1.20.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-grohmm: Update to 1.20.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-biocviews: Update to 1.54.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-biocstyle: Update to 2.14.2.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-bioccheck: Update to 1.22.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-s4vectors: Update to 0.24.1.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-iranges: Update to 2.20.1.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-genomeinfodb: Update to 1.22.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-edger: Update to 3.28.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-variantannotation: Update to 1.32.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-limma: Update to 3.42.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-xvector: Update to 0.26.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-genomicranges: Update to 1.38.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-biobase: Update to 2.46.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-annotationdbi: Update to 1.48.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-biomart: Update to 2.42.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-biocparallel: Update to 1.20.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-biostrings: Update to 2.54.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-rsamtools: Update to 2.2.1.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-delayedarray: Update to 0.12.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-summarizedexperiment: Update to 1.16.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-genomicalignments: Update to 1.22.1.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-rtracklayer: Update to 1.46.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-genomicfeatures: Update to 1.38.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-topgo: Update to 2.37.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-bsgenome: Update to 1.54.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-impute: Update to 1.60.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-seqpattern: Update to 1.18.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-genomation: Update to 1.18.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-seqlogo: Update to 1.52.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-motifrg: Update to 1.30.0.	blob \| commitdiff \| raw \| diff to current
2019-12-15	Ricardo Wurmus	gnu: r-zlibbioc: Update to 1.32.0.	blob \| commitdiff \| raw \| diff to current
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