X-Git-Url: https://git.hcoop.net/jackhill/guix/guix.git/blobdiff_plain/ae55cd9630f43ad974f5cdc0558cbf67b8f37c19..b6574660e3cbbeb88bd38c10ca9e0d069f51706f:/gnu/packages/statistics.scm diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 46cd691ed3..13d64be498 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -183,7 +183,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") (define r-with-tests (package (name "r-with-tests") - (version "3.6.2") + (version "3.6.3") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -191,7 +191,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") version ".tar.gz")) (sha256 (base32 - "0m69pfi0nxyriyb2yz74xfzaxwfkinnf9kpvf1rz727vvmfa8rdx")))) + "13xaxwfbzj0bd6rn2n27z0n04lb93mcyq991w4vdbbg8v282jc49")))) (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-for-tests) @@ -504,14 +504,14 @@ code for possible problems.") (define-public r-foreign (package (name "r-foreign") - (version "0.8-75") + (version "0.8-76") (source (origin (method url-fetch) (uri (cran-uri "foreign" version)) (sha256 (base32 - "0g4mi101srjbl17ydb2hl3854m3xj0llj6861lfr30sp08nkqavl")))) + "1z6x2x1z12wnv0z4p74d91r5wfaq30sdz4ynwx0lncz1q45mhbh5")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/foreign") (synopsis "Read data stored by other statistics software") @@ -590,13 +590,13 @@ and operations on them using LAPACK and SuiteSparse.") (define-public r-nlme (package (name "r-nlme") - (version "3.1-144") + (version "3.1-145") (source (origin (method url-fetch) (uri (cran-uri "nlme" version)) (sha256 - (base32 "1gqyq53fdq23wsi3f4n9vg4mn5i0v18zam5lnzlpg581xifx2779")))) + (base32 "1i9a3afdmn2ziks0imz0j09ay9n0zb9mhrymy9mg97vvlz5diwrh")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -635,14 +635,14 @@ distributions beyond the exponential family.") (define-public r-nnet (package (name "r-nnet") - (version "7.3-12") + (version "7.3-13") (source (origin (method url-fetch) (uri (cran-uri "nnet" version)) (sha256 (base32 - "17amqnw9dpap2w8ivx53hxha2xrm0drwfnj32li0xk41hlz548r7")))) + "1z0rj5cm4ycw1y0gd5wwwg8c2298v90iybgqdqh17967jbi2125f")))) (build-system r-build-system) (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") (synopsis "Feed-forward neural networks and multinomial log-linear models") @@ -693,14 +693,14 @@ analysis.") (define-public r-survival (package (name "r-survival") - (version "3.1-8") + (version "3.1-11") (source (origin (method url-fetch) (uri (cran-uri "survival" version)) (sha256 (base32 - "15fj4y8c107bwq22amx88r5hw7qndlcbr9sapzrpkpr7iqz3kkyf")))) + "1fbhbm3bnpg1nmj37h1d76x813ggvwk0cp51ixmmgb3pz47i5xj4")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) @@ -804,13 +804,13 @@ effects of different types of color-blindness.") (define-public r-digest (package (name "r-digest") - (version "0.6.24") + (version "0.6.25") (source (origin (method url-fetch) (uri (cran-uri "digest" version)) (sha256 - (base32 "01xsmcgqva9bza30zh7kj4lzapxgg4yiljfk99g4v6xng50mp604")))) + (base32 "1r9dkq0kxkps54gkmgcdngsd068p054va2vhnqhs5jmwp2vsvk0m")))) (build-system r-build-system) ;; Vignettes require r-knitr, which requires r-digest, so we have to ;; disable them and the tests. @@ -933,13 +933,13 @@ in which the whole-plots or split-plots or both can be freely exchangeable.") (define-public r-plyr (package (name "r-plyr") - (version "1.8.5") + (version "1.8.6") (source (origin (method url-fetch) (uri (cran-uri "plyr" version)) (sha256 - (base32 "0x4mbb3rgv1ayxqidw0p9i10khbg51fz5r62vw4il8d7licqq07a")))) + (base32 "11sjjdn146w95s1vsfmmgdls082cbnm1slv98xvyjhsl2mpx4mga")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) (home-page "http://had.co.nz/plyr") @@ -1088,26 +1088,25 @@ using just two functions: melt and dcast (or acast).") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "3.2.1") + (version "3.3.0") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "0mjswqiqcwm0aqxll16bx2kwa6c9km3aql87bdj4347n1ali94g3")))) + (base32 "0j21am605kqqzlwhm45kaj0m2irnmy2vz0j7kzi9f0qdzrv3q3ij")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) + ("r-glue" ,r-glue) ("r-gtable" ,r-gtable) - ("r-lazyeval" ,r-lazyeval) + ("r-isoband" ,r-isoband) ("r-mass" ,r-mass) ("r-mgcv" ,r-mgcv) ("r-tibble" ,r-tibble) - ("r-reshape2" ,r-reshape2) ("r-rlang" ,r-rlang) ("r-scales" ,r-scales) ("r-svglite" ,r-svglite) ; Needed for 'ggsave' - ("r-viridislite" ,r-viridislite) ("r-withr" ,r-withr))) (home-page "https://ggplot2.tidyverse.org") (synopsis "An implementation of the grammar of graphics") @@ -1555,13 +1554,13 @@ R packages that praise their users.") (define-public r-testthat (package (name "r-testthat") - (version "2.3.1") + (version "2.3.2") (source (origin (method url-fetch) (uri (cran-uri "testthat" version)) (sha256 (base32 - "0m8xchdpgn9iwj6gb2qw46zr85v9zf1gkbr9nnahmy5sp1s9bbky")))) + "0v70v2fs0f2ir962z9csbjlj8snrq9mbjfyhhb9dhz3zy26qs9hs")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -1607,13 +1606,13 @@ defined in different packages.") (define-public r-rlang (package (name "r-rlang") - (version "0.4.4") + (version "0.4.5") (source (origin (method url-fetch) (uri (cran-uri "rlang" version)) (sha256 (base32 - "1kqmrk00lnkbclnvj1dizjbdav0g1w44yd6ja4yy3bivwan9jf23")))) + "1a0h3dr519p3jj6aygbhwi9f2zwlan6d07f1gkh2db56y5vaq7yd")))) (build-system r-build-system) (home-page "http://rlang.tidyverse.org") (synopsis "Functions for base types, core R and Tidyverse features") @@ -1651,13 +1650,13 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "0.8.4") + (version "0.8.5") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "1nd0mmvqjbzbknawa520f64p9zlj9lwdlq0hh7c1mciyy7ah6641")))) + "0602b4a9nffxx67q57csqp87nkrv33nn9wlaw1458yys9fzx6l2p")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -1672,6 +1671,8 @@ and printing capabilities than traditional data frames.") ("r-rlang" ,r-rlang) ("r-tibble" ,r-tibble) ("r-tidyselect" ,r-tidyselect))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/hadley/dplyr") (synopsis "Tools for working with data frames in R") (description @@ -1879,14 +1880,14 @@ building design matrices.") (define-public python-statsmodels (package (name "python-statsmodels") - (version "0.9.0") + (version "0.11.1") (source (origin (method url-fetch) (uri (pypi-uri "statsmodels" version)) (sha256 (base32 - "0fxs8a7sp4d7jvqlm36yi45i2d28kjfvraf9q8i9jr1chhxgjqb4")))) + "1w6mf8b86vizi2895j11szqryr2v1ckjig3wp9fv94aslfh3zpjv")))) (build-system python-build-system) (arguments `(;; The test suite is very large and rather brittle. Tests often fail @@ -3553,13 +3554,13 @@ vignettes.") (define-public r-mvtnorm (package (name "r-mvtnorm") - (version "1.0-12") + (version "1.1-0") (source (origin (method url-fetch) (uri (cran-uri "mvtnorm" version)) (sha256 (base32 - "03rfmii9j8x8fjv7hp8qd28z0svl4w0x54k2f4jpwv4qa7079i24")))) + "0pfb6qk4yb6xaya8i1wvx6dnc3jj4s2g94sq2kzv4p8zn4pf24l1")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -3608,6 +3609,8 @@ memory usage.") `(("r-ggplot2" ,r-ggplot2) ("r-gridextra" ,r-gridextra) ("r-viridislite" ,r-viridislite))) + (native-inputs + `(("r-knitr" ,r-knitr))) ; for vignettes (home-page "https://github.com/sjmgarnier/viridis") (synopsis "Matplotlib default color map") (description @@ -4179,14 +4182,14 @@ including: (define-public r-gplots (package (name "r-gplots") - (version "3.0.1.2") + (version "3.0.3") (source (origin (method url-fetch) (uri (cran-uri "gplots" version)) (sha256 (base32 - "0vrm7wqrmqsmfrc070r9chpzb0vv60pay2lyar9qxfry6bsrvx86")))) + "0hs6mk48i9yd43rg9wfjc2nxsjjwrnpifxqvxkv8ah18kvpd6xnp")))) (build-system r-build-system) (propagated-inputs `(("r-catools" ,r-catools) @@ -4638,14 +4641,14 @@ original public code has been corrected.") (define-public r-modeltools (package (name "r-modeltools") - (version "0.2-22") + (version "0.2-23") (source (origin (method url-fetch) (uri (cran-uri "modeltools" version)) (sha256 (base32 - "1s9lmkac3rl0nknf4wizfhg7ryq7c8yvvyc4z619238br27hhsi5")))) + "1vqh69256h344sbj5affm0kmc77dakrxp6442xfdnfd0y5d8sgkb")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/modeltools") (synopsis "Tools and classes for statistical models") @@ -4853,14 +4856,14 @@ generally.") (define-public r-robust (package (name "r-robust") - (version "0.4-18.2") + (version "0.5-0.0") (source (origin (method url-fetch) (uri (cran-uri "robust" version)) (sha256 (base32 - "02x7d6dgx3skiadvx5m3c44b4bhz37ycpfhc25dhhv50y1db6l3k")))) + "1ks5scp8bnicl9j1r8yrmz668fjs6ifdmi540zw6d2ck500bbw42")))) (build-system r-build-system) (propagated-inputs `(("r-fit-models" ,r-fit-models) @@ -5098,14 +5101,14 @@ expected shortfall risk are also included.") (define-public r-nloptr (package (name "r-nloptr") - (version "1.2.1") + (version "1.2.2") (source (origin (method url-fetch) (uri (cran-uri "nloptr" version)) (sha256 (base32 - "15yz60kljxwnhm2m3gryjzxl3ynhkhd5jiwc179b1hz6rlzf71hz")))) + "19k7nd3a7cg35k5i1cwj1lhgfs02jb7bc2gwlammpq6j41rh4vr7")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr) ; for building vignettes @@ -5480,14 +5483,14 @@ and the corresponding decision threshold.") (define-public r-forcats (package (name "r-forcats") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "forcats" version)) (sha256 (base32 - "1cnjh23z59fhbjmy7y95425hcq3m5wrwqvahsxwi7zm6d9bwp0vw")))) + "1i4hblsjgwkrcwgvgsb5yj33pw1hwdj3lr9dvxymkv1kjdw0x5lg")))) (build-system r-build-system) (propagated-inputs `(("r-ellipsis" ,r-ellipsis)