X-Git-Url: https://git.hcoop.net/jackhill/guix/guix.git/blobdiff_plain/3a2747ab74911c0c22f71ae06f72fe0d528d7f25..12e210d90744948785b6ac007afae88456adc080:/gnu/packages/bioinformatics.scm

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 475aa019d0..54641c6906 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8,7 +8,7 @@
 ;;; Copyright © 2016, 2020 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo@gmail.com>
 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2017, 2021 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
 ;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
 ;;; Copyright © 2018, 2019, 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
@@ -2596,15 +2596,27 @@ accessing bigWig files.")
 (define-public python-schema-salad
   (package
     (name "python-schema-salad")
-    (version "7.0.20200811075006")
+    (version "7.1.20210316164414")
     (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "schema-salad" version))
         (sha256
          (base32
-          "0wanbwmqb189x1m0vacnhpivfsr8rwbqknngivzxxs8j46yj80bg"))))
+          "04jaykdpgfnkrghvli5swxzqp7yba842am4bz42hcfljsmkrxvrk"))))
     (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'skip-failing-tests
+           (lambda _
+             ;; Skip tests that require network access.
+             (substitute* "schema_salad/tests/test_cwl11.py"
+               (("^def test_(secondaryFiles|outputBinding)" all)
+                (string-append "@pytest.mark.skip(reason="
+                               "\"test requires network access\")\n"
+                               all)))
+             #t)))))
     (propagated-inputs
      `(("python-cachecontrol" ,python-cachecontrol-0.11)
        ("python-lockfile" ,python-lockfile)