`(("r-bsgenome" ,r-bsgenome)
("r-bsgenome-mmusculus-ucsc-mm9"
,r-bsgenome-mmusculus-ucsc-mm9)))
- (home-page "http://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm9.masked/")
+ (home-page "https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm9.masked/")
(synopsis "Full masked genome sequences for Mouse")
(description
"This package provides full genome sequences for Mus musculus (Mouse) as
(define-public r-regioner
(package
(name "r-regioner")
- (version "1.18.0")
+ (version "1.18.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "regioneR" version))
(sha256
(base32
- "0m073hrqp62zpd2blnqm5ka539hcilir05m8av14vdhzhjzp13ya"))))
+ "0if7r6njz3ahm545383z5mzmzw8fdvw80a9lfz160j5pcgpx2dq9"))))
(properties `((upstream-name . "regioneR")))
(build-system r-build-system)
(propagated-inputs
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-systempiper" ,r-systempiper)))
- (home-page "http://bioconductor.org/packages/DiffBind")
+ (home-page "https://bioconductor.org/packages/DiffBind")
(synopsis "Differential binding analysis of ChIP-Seq peak data")
(description
"This package computes differentially bound sites from multiple
("r-rsamtools" ,r-rsamtools)
("r-genomicalignments" ,r-genomicalignments)
("r-rtracklayer" ,r-rtracklayer)))
- (home-page "http://bioconductor.org/packages/RIPSeeker")
+ (home-page "https://bioconductor.org/packages/RIPSeeker")
(synopsis
"Identifying protein-associated transcripts from RIP-seq experiments")
(description
("r-biocgenerics" ,r-biocgenerics)
("r-biobase" ,r-biobase)
("r-mass" ,r-mass)))
- (home-page "http://bioconductor.org/packages/multtest")
+ (home-page "https://bioconductor.org/packages/multtest")
(synopsis "Resampling-based multiple hypothesis testing")
(description
"This package can do non-parametric bootstrap and permutation
("r-seqinr" ,r-seqinr)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-venndiagram" ,r-venndiagram)))
- (home-page "http://bioconductor.org/packages/ChIPpeakAnno")
+ (home-page "https://bioconductor.org/packages/ChIPpeakAnno")
(synopsis "Peaks annotation from ChIP-seq and ChIP-chip experiments")
(description
"The package includes functions to retrieve the sequences around the peak,
(build-system r-build-system)
(propagated-inputs
`(("r-limma" ,r-limma)))
- (home-page "http://bioconductor.org/packages/marray")
+ (home-page "https://bioconductor.org/packages/marray")
(synopsis "Exploratory analysis for two-color spotted microarray data")
(description "This package contains class definitions for two-color spotted
microarray data. It also includes functions for data input, diagnostic plots,
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-marray" ,r-marray)))
- (home-page "http://bioconductor.org/packages/CGHbase")
+ (home-page "https://bioconductor.org/packages/CGHbase")
(synopsis "Base functions and classes for arrayCGH data analysis")
(description "This package contains functions and classes that are needed by
the @code{arrayCGH} packages.")
("r-impute" ,r-impute)
("r-dnacopy" ,r-dnacopy)
("r-snowfall" ,r-snowfall)))
- (home-page "http://bioconductor.org/packages/CGHcall")
+ (home-page "https://bioconductor.org/packages/CGHcall")
(synopsis "Base functions and classes for arrayCGH data analysis")
(description "This package contains functions and classes that are needed by
@code{arrayCGH} packages.")
("r-matrixstats" ,r-matrixstats)
("r-r-utils" ,r-r-utils)
("r-rsamtools" ,r-rsamtools)))
- (home-page "http://bioconductor.org/packages/QDNAseq")
+ (home-page "https://bioconductor.org/packages/QDNAseq")
(synopsis "Quantitative DNA sequencing for chromosomal aberrations")
(description "The genome is divided into non-overlapping fixed-sized bins,
number of sequence reads in each counted, adjusted with a simultaneous
(define-public r-inspect
(package
(name "r-inspect")
- (version "1.16.1")
+ (version "1.16.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "INSPEcT" version))
(sha256
(base32
- "03cf9c94ra4f847ndlf8sn2cq1kl1055514wjq0lqbvlbfdj1dq3"))))
+ "1g8la7k4pnyr2hvk4yjd1bwvjy6nqbbb0fwxrrh2ifgqf4h21x2p"))))
(properties `((upstream-name . "INSPEcT")))
(build-system r-build-system)
(propagated-inputs
(define-public r-clusterprofiler
(package
(name "r-clusterprofiler")
- (version "3.14.2")
+ (version "3.14.3")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "clusterProfiler" version))
(sha256
(base32
- "1y1l3yf1r1ykl9ngipvyzl5hbxxsfz7z5q5rcywkyss2b2b6gsg8"))))
+ "08pd7bmqmyxncj09ilz8yb9sf1pv9ni98y8b93pz2giy7pl407hg"))))
(properties
`((upstream-name . "clusterProfiler")))
(build-system r-build-system)
(define-public r-mlinterfaces
(package
(name "r-mlinterfaces")
- (version "1.66.0")
+ (version "1.66.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MLInterfaces" version))
(sha256
(base32
- "1vnzqd3y3jk1wgxybckzrcgwk0ly7zgcz5ki1ib0bk1jwv6xk5x8"))))
+ "1wc280iw9vllg6f58vsdj895yaqs8w42kl7jk8sgii009gwlaj8d"))))
(properties `((upstream-name . "MLInterfaces")))
(build-system r-build-system)
(propagated-inputs
("r-mlbench" ,r-mlbench)
("r-pls" ,r-pls)
("r-rcolorbrewer" ,r-rcolorbrewer)
- ("r-rda" ,r-rda)
("r-rpart" ,r-rpart)
("r-sfsmisc" ,r-sfsmisc)
("r-shiny" ,r-shiny)
(define-public r-ropls
(package
(name "r-ropls")
- (version "1.18.0")
+ (version "1.18.6")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ropls" version))
(sha256
(base32
- "05w1zrq92w3jfwq5sdyj27m5qjg4zv7acywia8vd6y5fbgcnyzlp"))))
+ "1sm2fmygrra9gdcs90lmk5y1ag6arga6159kggx4ij8bkhyc66vb"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
(define-public r-flowworkspace
(package
(name "r-flowworkspace")
- (version "3.34.0")
+ (version "3.34.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "flowWorkspace" version))
(sha256
(base32
- "0hvbkxyylsygra31l1lxyvbsr5hc50lqy1y7gwrfgrfil4a2m762"))))
+ "1ijbc6z9ljhrw3cqr02smgplhrfg44gzrb1dq4gbrpq3nj4khhpn"))))
(properties `((upstream-name . "flowWorkspace")))
(build-system r-build-system)
(propagated-inputs
(define-public r-variancepartition
(package
(name "r-variancepartition")
- (version "1.16.0")
+ (version "1.16.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "variancePartition" version))
(sha256
(base32
- "1ygx7f2sp4b7ilgspm6vqcbjxs7br9s6g3gwcdb978kx03ymp4i8"))))
+ "02pzsff14j4am2d949mh8xgi0c7k44g09q4lr6nqm08vf92brb6g"))))
(properties
`((upstream-name . "variancePartition")))
(build-system r-build-system)