;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2016, 2017 Ben Woodcroft <donttrustben@gmail.com>
-;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org>
+;;; Copyright © 2016, 2017, 2018, 2020, 2021 Roel Janssen <roel@gnu.org>
;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Raoul Bonnal <ilpuccio.febo@gmail.com>
;;; Copyright © 2018 Vijayalakshmi Vedantham <vijimay12@gmail.com>
into a pipeline of data manipulation and visualisation.")
(license license:gpl3)))
+(define-public r-hmm
+ (package
+ (name "r-hmm")
+ (version "1.0")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "HMM" version))
+ (sha256
+ (base32
+ "0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw"))))
+ (properties `((upstream-name . "HMM")))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/HMM/")
+ (synopsis "Hidden Markov Models")
+ (description "This package provides an easy to use library to setup, apply
+and make inference with discrete time and discrete space hidden Markov
+models.")
+ (license license:gpl2+)))
+
(define-public r-httpuv
(package
(name "r-httpuv")
(define-public r-arules
(package
(name "r-arules")
- (version "1.6-6")
+ (version "1.6-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "arules" version))
(sha256
(base32
- "1pk3jjizn2m5rwi7qkdkbq9f07acgpy0qdzzqmx0agg47cwahlkm"))))
+ "0m80kndfbannw8h53nqdd5wl8h33q2z259aa1cp1nwadaxf9fc1q"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)))
(define-public r-rastervis
(package
(name "r-rastervis")
- (version "0.50")
+ (version "0.50.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "rasterVis" version))
(sha256
(base32
- "0m7fjd53apxim0d0rjnyzc28vmfcg4spcrn0zbnk8llillxji1hi"))))
+ "1fkmyllydnmk3j2cmgf86r91wyxf2kh573x8bkck7wgkfniw4h7w"))))
(properties `((upstream-name . "rasterVis")))
(build-system r-build-system)
(propagated-inputs
(define-public r-renv
(package
(name "r-renv")
- (version "0.13.0")
+ (version "0.13.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "renv" version))
(sha256
(base32
- "16n2dz9jibc03f7q1wrzxss6l5jmaks7m2lnli9dz9anvcmxbdia"))))
+ "0jlsf6vfvqhr4i35xy3xf1ixkfillivzy3wbpl6ca9vyjpnhiwj1"))))
(properties `((upstream-name . "renv")))
(build-system r-build-system)
(native-inputs
(define-public r-rbibutils
(package
(name "r-rbibutils")
- (version "2.0")
+ (version "2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "rbibutils" version))
(sha256
(base32
- "1vfg2188i4dyhrmvnwpsh2la8qkd4wkryz2fpj4cppi1wfz3ml83"))))
+ "13phw0dk3p3s1z45ff7dbqnn27zws1209mp3d4763zh7xnsdsl44"))))
(properties `((upstream-name . "rbibutils")))
(build-system r-build-system)
(home-page "https://geobosh.github.io/rbibutils/")
(define-public r-officer
(package
(name "r-officer")
- (version "0.3.17")
+ (version "0.3.18")
(source
(origin
(method url-fetch)
(uri (cran-uri "officer" version))
(sha256
(base32
- "1apg0dh1zfhrqcbbmm8318l40gyjbqc2l9sdvwxx7qi8mzc1mqvw"))))
+ "1j3bv4j8x5ijj0j447vpdsk4p8pl3ncwdwnns6n3plfrqgsf3vsg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-r6" ,r-r6)
(define-public r-insight
(package
(name "r-insight")
- (version "0.13.1")
+ (version "0.13.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "insight" version))
(sha256
(base32
- "1la4yxzfl9fnknamnaziil6gvpdzl78z16lfzis9jgzg8r9q0y5l"))))
+ "03b7kd17h25mi1si40ibcp3jpasyqpj51mr8js0ywywyfw7909j1"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
`((upstream-name . "PhysicalActivity")))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/PhysicalActivity/")
- (synopsis "Procesing accelerometer data for physical activity measurement")
+ (synopsis "Processing accelerometer data for physical activity measurement")
(description
"This @code{r-physicalactivity} package provides a function @code{wearingMarking}
-for classification of monitor wear and nonwear time intervals in accelerometer
+for classification of monitored wear and nonwear time intervals in accelerometer
data collected to assess physical activity. The package also contains functions
for making plots of accelerometer data and obtaining the summary of various
information including daily monitor wear time and the mean monitor wear time
(define-public r-magick
(package
(name "r-magick")
- (version "2.7.0")
+ (version "2.7.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "magick" version))
(sha256
(base32
- "0m1kij6pp7dmsrhl80h60iyccjqmbbb3zdnqdc9sgy1kj1x3pscp"))))
+ "16svy84dq25g69axqgympsrh8dzssa1w3zz08zc8m6nprr3jqwqf"))))
(build-system r-build-system)
(inputs
`(("imagemagick" ,imagemagick)
(define-public r-emmeans
(package
(name "r-emmeans")
- (version "1.5.4")
+ (version "1.5.5-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "emmeans" version))
(sha256
(base32
- "1rbh3ls23fazrwpsam5llk3kqdzz2zvsms3i4f1cgn34ky3w8361"))))
+ "0l5dd71ihhs7zy6ygniy07iisgy7a1ai1w41hqf84swb0j3cl6iz"))))
(build-system r-build-system)
(propagated-inputs
`(("r-estimability" ,r-estimability)
(define-public r-ggeffects
(package
(name "r-ggeffects")
- (version "1.0.1")
+ (version "1.0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggeffects" version))
(sha256
(base32
- "1c5rvycaqp7zp1j6j17c84v8nlpi0w7bhfxmcha4n37m0snk1kgy"))))
+ "0qh8x8yi8gkb5x7zfxmb1c689k7bhc1f5947yymny34j7xdsb9s8"))))
(build-system r-build-system)
(propagated-inputs
`(("r-insight" ,r-insight)
(define-public r-effectsize
(package
(name "r-effectsize")
- (version "0.4.4")
+ (version "0.4.4-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "effectsize" version))
(sha256
(base32
- "0mgkq12ym72ncakkjpkzkjglhksyhj3iw8v4a8fjgpf7prvn191g"))))
+ "02rwf3lxnzgc8yh0wridsc6lqr9s6v0cqzbk4biwnr494rvs46zb"))))
(properties `((upstream-name . "effectsize")))
(build-system r-build-system)
(propagated-inputs
(define-public r-gh
(package
(name "r-gh")
- (version "1.2.0")
+ (version "1.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "gh" version))
(sha256
(base32
- "1zvy3ylxvni10lhvmbm9h14mg4wlsbdbzbzviwf28jxss8749219"))))
+ "16xa1qb1r28f8yc6ybjrxiq2zigxj886dp9k29jpsn5091xbzkq0"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cli" ,r-cli)
(define-public r-gert
(package
(name "r-gert")
- (version "1.2.0")
+ (version "1.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "gert" version))
(sha256
(base32
- "0ag2ia6cfb5drf3517lg5nhik1w0nv09a75wdy5jdciws1qra3d6"))))
+ "1fh72p92wj83yv1ch77jms6k1gjqfji8cmgw23vpxd0p8l9jj4h7"))))
(properties `((upstream-name . "gert")))
(build-system r-build-system)
(inputs
(define-public r-remotes
(package
(name "r-remotes")
- (version "2.2.0")
+ (version "2.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "remotes" version))
(sha256
(base32
- "1f1kdw9j1wald3fs8b3n68x1kljy07j60g3aw1aarx26ikyk9whj"))))
+ "0f35648bdxhvplcfj80r4hfj5w21f1s01kcz6b29d098c1mnfzb7"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(define-public r-summarytools
(package
(name "r-summarytools")
- (version "0.9.8")
+ (version "0.9.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "summarytools" version))
(sha256
(base32
- "0n7rad6bkfn9cb99wbfzbwl5qzch48r0gafhddfcqvyh4fbn2k0j"))))
+ "0ig7vgjvldbndwhky1bsi38zifr9ji8xvvfqbfffplac08llvrbr"))))
(build-system r-build-system)
(propagated-inputs
`(("r-base64enc" ,r-base64enc)
(define-public r-biocmanager
(package
(name "r-biocmanager")
- (version "1.30.10")
+ (version "1.30.12")
(source
(origin
(method url-fetch)
(uri (cran-uri "BiocManager" version))
(sha256
- (base32 "03n9s2vf7vgpgb5alpxwamf9xfkn32cbzngwyn6spq1bnh9a9dzk"))))
+ (base32 "0c2anza01pc36manj3cvycbq8p57qpq18dsimk3y3gpks70hhqf3"))))
(properties `((upstream-name . "BiocManager")))
(build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://cran.r-project.org/web/packages/BiocManager/")
(synopsis "Access the Bioconductor project package repository")
(description
(define-public r-tiff
(package
(name "r-tiff")
- (version "0.1-7")
+ (version "0.1-8")
(source
(origin
(method url-fetch)
(uri (cran-uri "tiff" version))
(sha256
(base32
- "101n6x70fr1dhcwx53g3s8q1j4wh93y0388v1s1316f8558rxqxh"))))
+ "18m17g5q3nz4v4wrqxnb129b1j02873g2vknddczkklf1pvq4x2b"))))
(build-system r-build-system)
(inputs
`(("libtiff" ,libtiff)
("libjpeg" ,libjpeg-turbo)
("zlib" ,zlib)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
(home-page "https://www.rforge.net/tiff/")
(synopsis "Read and write TIFF images")
(description
(define-public r-gargle
(package
(name "r-gargle")
- (version "1.0.0")
+ (version "1.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "gargle" version))
(sha256
(base32
- "0hsqn4hf935wn6vk2pwym7la4sdvy271y4cashp38pg4hkpg9zph"))))
+ "03y29dzz54bw9px5k8a72vmc000lcyrkc5l0izkqcciyi9ijkr3w"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-fs" ,r-fs)
+ `(("r-cli" ,r-cli)
+ ("r-fs" ,r-fs)
("r-glue" ,r-glue)
("r-httr" ,r-httr)
("r-jsonlite" ,r-jsonlite)
+ ("r-rappdirs" ,r-rappdirs)
("r-rlang" ,r-rlang)
+ ("r-rstudioapi" ,r-rstudioapi)
("r-withr" ,r-withr)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(define-public r-rmpfr
(package
(name "r-rmpfr")
- (version "0.8-2")
+ (version "0.8-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "Rmpfr" version))
(sha256
(base32
- "007pc7fpzl2mcg3qxa2vfjip6m2dr314qjsnybkj3kdj70bszxkl"))))
+ "1m9wwwch9wg886147brr2zfih65yfdfs3vmfvim1w6jykycasc9a"))))
(properties `((upstream-name . "Rmpfr")))
(build-system r-build-system)
(inputs
(define-public r-units
(package
(name "r-units")
- (version "0.7-0")
+ (version "0.7-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "units" version))
(sha256
(base32
- "0kwfcrrbcwl7s50n1wp33vswqzmprh91clvakbd1jpznqpg5m3js"))))
+ "0wwndzjjgqj795xvx1jwa86nwd8adfiwj0pn15yyzzk9baky2axw"))))
(build-system r-build-system)
(inputs
`(("udunits" ,udunits)))
(define-public r-sf
(package
(name "r-sf")
- (version "0.9-7")
+ (version "0.9-8")
(source
(origin
(method url-fetch)
(uri (cran-uri "sf" version))
(sha256
(base32
- "175fmnnw11fjhfgjv9sn9b0jfjcqbybpgwsvv99d5yddigvw5jja"))))
+ "096gg2hbynn6mv3w8n69x987fklg5rrgd0d4nbqaw7vhg1jhlmqi"))))
(build-system r-build-system)
(inputs
`(("gdal" ,gdal)
(define-public r-spdep
(package
(name "r-spdep")
- (version "1.1-5")
+ (version "1.1-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "spdep" version))
(sha256
(base32
- "0pbd7wrg5v44p2yxsjp774lpyzap3madir5mn5p3ix7ibk7ldjs7"))))
+ "0sg417d95paww625663lgmk6jwhs88djqzc96gbs1hxazlf77qb1"))))
(build-system r-build-system)
(propagated-inputs
`(("r-boot" ,r-boot)
(define-public r-rms
(package
(name "r-rms")
- (version "6.1-1")
+ (version "6.2-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "rms" version))
(sha256
- (base32 "1zgfd60lzbakcv7x0i5k3lkw3s0xx5bzssjgangna5lq2j17cdli"))))
+ (base32 "1di4xvsx0rwkr77nfqiysbg4qf699199xqil70i39d4zwfzqrm8h"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cluster" ,r-cluster)
(define-public r-tweenr
(package
(name "r-tweenr")
- (version "1.0.1")
+ (version "1.0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "tweenr" version))
(sha256
(base32
- "0sq90pbln6lkc2q3zflhkxxwpqdw5dd7igrxhdnlynkdrmi83mpg"))))
+ "17znizh4yabh2zs9mzyr0sl6p0pw49961i61br7cl1b7v9sza18q"))))
(build-system r-build-system)
(propagated-inputs
`(("r-farver" ,r-farver)
(description
"The aim of the ggplot2 package is to aid in visual data investigations.
This focus has led to a lack of facilities for composing specialized plots.
-Thi package aims to be a collection of mainly new statistics and geometries
+This package aims to be a collection of mainly new statistics and geometries
that fills this gap.")
(license license:expat)))
(define-public r-styler
(package
(name "r-styler")
- (version "1.3.2")
+ (version "1.4.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "styler" version))
(sha256
(base32
- "1waglhsy2c53qjgd2qhlzda3z0lbzbwx9fkrfhac41y6h91mgkrz"))))
+ "10fj4cnazicb2z9djbv5pszcmrf7wbzagbjvksffqpdc5vbbbw5x"))))
(build-system r-build-system)
(propagated-inputs
`(("r-backports" ,r-backports)
("r-tibble" ,r-tibble)
("r-withr" ,r-withr)
("r-xfun" ,r-xfun)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/r-lib/styler")
(synopsis "Non-invasive pretty printing of R code")
(description
(define-public r-dae
(package
(name "r-dae")
- (version "3.1-32")
+ (version "3.1-37")
(source
(origin
(method url-fetch)
(uri (cran-uri "dae" version))
(sha256
(base32
- "126w1lb9pz8mb2ajl2vz5dj798nbifp0dypnzfgcwixif5g5bpqi"))))
+ "102fgbdpn7yvm1zj180cv4sr1096sz35d4gndsv7w9kriqyi1c1l"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
(define-public r-dalex
(package
(name "r-dalex")
- (version "2.1.1")
+ (version "2.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "DALEX" version))
(sha256
(base32
- "1dnqsml94s648w8swsrq8spddnd4mj5pl3q6xxr917w6a1jxgyfz"))))
+ "1qnjbhilv4jfmwqxfi9xc5ysrh8gr84a2a5imjfci7d1n3zcnryn"))))
(properties `((upstream-name . "DALEX")))
(build-system r-build-system)
(propagated-inputs
(define-public r-gamlss-data
(package
(name "r-gamlss-data")
- (version "5.1-4")
+ (version "6.0-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "gamlss.data" version))
(sha256
(base32
- "1dgfspbmps6ipzcmw681wjdp320nm50dwsxafgrcwxndqgc7fdqd"))))
+ "1cjb2n5i5mnhmb5qbqycdbfg65j7nxb9s74yihqs9kpa39byrzcq"))))
(properties `((upstream-name . "gamlss.data")))
(build-system r-build-system)
(home-page "http://www.gamlss.org/")
(define-public r-gamlss
(package
(name "r-gamlss")
- (version "5.3-1")
+ (version "5.3-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "gamlss" version))
(sha256
(base32
- "1ngf6g4zixwm6ni5r0fs0f6132xd2f2a6mlski9hlqnvvwb46iwr"))))
+ "06mh00jjxnqwknbv777hawjk0zm81ixrp35fg59mrlqz8y3p2w3j"))))
(properties `((upstream-name . "gamlss")))
(build-system r-build-system)
(propagated-inputs
(define-public r-actuar
(package
(name "r-actuar")
- (version "3.1-1")
+ (version "3.1-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "actuar" version))
(sha256
(base32
- "0sxn1mskh7x164f1vbrqnadgxnq7y2p3a9mlmqc0sp6cqkw9lhp9"))))
+ "0gaqm8bkjly2b1jkr1nqnxlp5vqvfpj0a4jd70jv4f9ndlif676y"))))
(properties `((upstream-name . "actuar")))
(build-system r-build-system)
(propagated-inputs `(("r-expint" ,r-expint)))
(define-public r-imager
(package
(name "r-imager")
- (version "0.42.7")
+ (version "0.42.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "imager" version))
(sha256
(base32
- "1dq0rblnrmnk689bcdmml179gk9lff8x92s2npkjllgjq5q2vfpd"))))
+ "1kzl93l6k9i4528bbycbqxdn28mj7hnx0fbxisva859xl1wys5c5"))))
(properties `((upstream-name . "imager")))
(build-system r-build-system)
(inputs
(define-public r-univoutl
(package
(name "r-univoutl")
- (version "0.2")
+ (version "0.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "univOutl" version))
(sha256
(base32
- "0rlc3w7cx2hfxacpjs9kmjzv5p8v9wxnlpxi3rh276wiy5zdr91v"))))
+ "1hhpxrpmp2wbrynx9xjndnp2sccirgky2x6ksd6yk6phmk0rbzjp"))))
(properties `((upstream-name . "univOutl")))
(build-system r-build-system)
(propagated-inputs
(define-public r-shapes
(package
(name "r-shapes")
- (version "1.2.5")
+ (version "1.2.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "shapes" version))
(sha256
(base32
- "0gfpdydfysp5mwg7qmkn73s67gvh2szb40mzqrx97h41ijgcgd8s"))))
+ "1p9fr95zk3q2v277c5ksb0nh26mcpzwjzjb2lmag51z6hck8cb66"))))
(properties `((upstream-name . "shapes")))
(build-system r-build-system)
(propagated-inputs
(define-public r-quanteda
(package
(name "r-quanteda")
- (version "2.1.2")
+ (version "3.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "quanteda" version))
(sha256
(base32
- "13rjwgmg5v1dbryrs9ifyy76s5ib6wrbrm2y5af44vhf1h6p9cvy"))))
+ "0b1jfkdhpsg5jhjz4p0nf4cmi9p8w40wv3i2f17jf2x1n1y2hjj8"))))
(properties `((upstream-name . "quanteda")))
(build-system r-build-system)
(propagated-inputs
- `(("r-data-table" ,r-data-table)
- ("r-digest" ,r-digest)
- ("r-extrafont" ,r-extrafont)
- ("r-fastmatch" ,r-fastmatch)
- ("r-ggplot2" ,r-ggplot2)
- ("r-ggrepel" ,r-ggrepel)
- ("r-jsonlite" ,r-jsonlite)
+ `(("r-fastmatch" ,r-fastmatch)
("r-magrittr" ,r-magrittr)
("r-matrix" ,r-matrix)
- ("r-network" ,r-network)
- ("r-proxyc" ,r-proxyc)
("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo)
("r-rcppparallel" ,r-rcppparallel)
- ("r-sna" ,r-sna)
("r-snowballc" ,r-snowballc)
("r-stopwords" ,r-stopwords)
("r-stringi" ,r-stringi)
(define-public r-packrat
(package
(name "r-packrat")
- (version "0.5.0")
+ (version "0.6.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "packrat" version))
(sha256
(base32
- "1xy5dd2hrpqa07jfl4s7dsrya05mf36ms74j833scdz0zf89586n"))))
+ "01cn2vf95nc8bh0hh8imkn030yra3hx64q1fb8jwsr52p9s397fr"))))
(properties `((upstream-name . "packrat")))
(build-system r-build-system)
(home-page "https://github.com/rstudio/packrat/")
(define-public r-latex2exp
(package
(name "r-latex2exp")
- (version "0.4.0")
+ (version "0.5.0")
(source (origin
(method url-fetch)
(uri (cran-uri "latex2exp" version))
(sha256
(base32
- "12nbcgfmv13k6sc6m326ras9bcvy380b7rxcxphn06r3cfkby0zw"))))
+ "0qknpw7zwwbzsbry94j8fn48mq7kq5rc5448g9hybbisain3wfvg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-stringr" ,r-stringr)
("r-magrittr" ,r-magrittr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/stefano-meschiari/latex2exp/")
(synopsis "Use LaTeX expressions in plots")
(description "@code{latex2exp} parses and converts LaTeX math formulas to
(define-public r-lightgbm
(package
(name "r-lightgbm")
- (version "3.1.1")
+ (version "3.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "lightgbm" version))
(sha256
(base32
- "1pwsh6j9ksahh58b15j5ij56bsc6syy3z4k4a5zhy5n7829rz555"))))
+ "0aw1zcrg7nhddfaif9544hn8g8qcylv6vzpkf8d3kl07nzvgxkvj"))))
(properties `((upstream-name . "lightgbm")))
(build-system r-build-system)
(propagated-inputs
(define-public r-shapforxgboost
(package
(name "r-shapforxgboost")
- (version "0.1.0")
+ (version "0.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "SHAPforxgboost" version))
(sha256
(base32
- "0jgyss9bawl7sf4dwa75sn7ld3mvrrr0z2074lbkq3f5qb9gwsly"))))
+ "106nsf02b1w3yshb55lwnyw1rl1a60162v2wk8znjz3b4ln3mqj5"))))
(properties
`((upstream-name . "SHAPforxgboost")))
(build-system r-build-system)
("r-ggforce" ,r-ggforce)
("r-ggplot2" ,r-ggplot2)
("r-ggpubr" ,r-ggpubr)
- ("r-lightgbm" ,r-lightgbm)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-xgboost" ,r-xgboost)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/liuyanguu/SHAPforxgboost")
(synopsis "SHAP Plots for XGBoost")
(description
(define-public r-spatstat-utils
(package
(name "r-spatstat-utils")
- (version "2.0-0")
+ (version "2.1-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat.utils" version))
(sha256
(base32
- "1li0vksxpkvgyx3j2wi40kj5687vwakkfdix6icm6g01a0lb2m5d"))))
+ "18gqsc1a85pk69aifi10wprv1c0lci3zxp4wqjb27dlmlbz6jdgd"))))
(properties
`((upstream-name . "spatstat.utils")))
(build-system r-build-system)
(define-public r-spatstat-sparse
(package
(name "r-spatstat-sparse")
- (version "1.2-1")
+ (version "2.0-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat.sparse" version))
(sha256
(base32
- "1w312q7gxzchigxxzk9akscdsz66j5085lgjryamschjgp4f8yk2"))))
+ "1iqrpazb88s4w208adf2qgm4ajwz3kwqck65k9g5l28zw9jcxyr7"))))
(properties
`((upstream-name . "spatstat.sparse")))
(build-system r-build-system)
(define-public r-spatstat-data
(package
(name "r-spatstat-data")
- (version "2.0-0")
+ (version "2.1-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat.data" version))
(sha256
(base32
- "1z1jb1yzb7qhfg55dhzcrdvn5x8hpg9xif0hpnapddbmhxd1hbb7"))))
+ "0csmz5vjaxnznkbsfah8qd3v8p0y56jvis01ialxzvf71snl160v"))))
(properties `((upstream-name . "spatstat.data")))
(build-system r-build-system)
(propagated-inputs
(define-public r-spatstat-geom
(package
(name "r-spatstat-geom")
- (version "1.65-5")
+ (version "2.0-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat.geom" version))
(sha256
(base32
- "0g0m5b3nbzpyblbp77n56k6aiw3fn23jkk72h9fhqlg1ydn2fzpk"))))
+ "1r7nlgh62apchidg28fxq1a22iv1b29y5xmsg1kjwfvkbq8zxsvh"))))
(properties `((upstream-name . "spatstat.geom")))
(build-system r-build-system)
(propagated-inputs
`(("r-deldir" ,r-deldir)
("r-polyclip" ,r-polyclip)
("r-spatstat-data" ,r-spatstat-data)
- ("r-spatstat-sparse" ,r-spatstat-sparse)
("r-spatstat-utils" ,r-spatstat-utils)))
(home-page "http://spatstat.org/")
(synopsis "Geometrical functionality of the spatstat package")
(define-public r-spatstat-core
(package
(name "r-spatstat-core")
- (version "1.65-5")
+ (version "2.0-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat.core" version))
(sha256
(base32
- "0wq61sd53hwyk3fzjdc2prrr66n67zbwb5i3ii7kvyhfwx0xikm3"))))
+ "19wv27nfx48xkqa1amys4jf93k0d8xns20p84n5kqyibscdsksgx"))))
(properties `((upstream-name . "spatstat.core")))
(build-system r-build-system)
(propagated-inputs
(define-public r-spatstat-linnet
(package
(name "r-spatstat-linnet")
- (version "1.65-3")
+ (version "2.1-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat.linnet" version))
(sha256
(base32
- "1y088r26h5yv006ydgcb4iwpvnc7ql857gky0hbi7xqqciqr8wdv"))))
+ "1ia0qgggddiwhhyd3q516f3p6by0p4xnq26wqz7410n2ja60bbb4"))))
(properties
`((upstream-name . "spatstat.linnet")))
(build-system r-build-system)
(define-public r-spatstat
(package
(name "r-spatstat")
- (version "2.0-1")
+ (version "2.1-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat" version))
(sha256
(base32
- "1xq11ijc0d0lbixxb3wnvyr4gplfj2d2i64ynsa089xd525zzzbw"))))
+ "0vr5md53247v6crvjvg9m82vc6h914zzvkzfkga8x79hv35ii4as"))))
(properties `((upstream-name . "spatstat")))
(build-system r-build-system)
(propagated-inputs
(define-public r-cpp11
(package
(name "r-cpp11")
- (version "0.2.6")
+ (version "0.2.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "cpp11" version))
(sha256
(base32
- "118i8s7978vl9xyhnb47wcbd6rcc6b958mq2w8s3rdsd4pxv62gz"))))
+ "1m31yq3kn5wqvm0ahj08kb4bszbbhfybx3l2x975cjzgv3058h8x"))))
(properties `((upstream-name . "cpp11")))
(build-system r-build-system)
(native-inputs `(("r-knitr" ,r-knitr)))
(define-public r-muhaz
(package
(name "r-muhaz")
- (version "1.2.6.1")
+ (version "1.2.6.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "muhaz" version))
(sha256
(base32
- "08qh43zx6h3yby44q2vxphfvmfdmqxpgyp0734yn341sy9n8pkkk"))))
+ "1lzc8arbpcxgfap3dfsgq8crpp1cxd9qlbrhvyvl79zgpxjqx4q2"))))
(properties `((upstream-name . "muhaz")))
(build-system r-build-system)
(propagated-inputs
(define-public r-yardstick
(package
(name "r-yardstick")
- (version "0.0.7")
+ (version "0.0.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "yardstick" version))
(sha256
(base32
- "1yrvlhn4gxyn9f20z5yv3xam0j0a8z362jwa32r33r0g0jk5z2fq"))))
+ "13b0lyj2k0r568mwlyz9yvp9156rzlj4jqnjazaffh9vwqh4whir"))))
(properties `((upstream-name . "yardstick")))
(build-system r-build-system)
(propagated-inputs
("r-generics" ,r-generics)
("r-proc" ,r-proc)
("r-rlang" ,r-rlang)
- ("r-tidyselect" ,r-tidyselect)))
+ ("r-tidyselect" ,r-tidyselect)
+ ("r-vctrs" ,r-vctrs)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/tidymodels/yardstick")
(define-public r-slider
(package
(name "r-slider")
- (version "0.1.5")
+ (version "0.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "slider" version))
(sha256
(base32
- "1x4jwfxam4czfkb1s5qds5krfw1h2p5a4rh6f5z4yvhsv0d81xck"))))
+ "1jijh8f3qcn8fa677sqvgl2fb4r5vca1cw4l2vbcqscxb2hr4bqw"))))
(properties `((upstream-name . "slider")))
(build-system r-build-system)
(propagated-inputs
- `(("r-glue" ,r-glue)
+ `(("r-ellipsis" ,r-ellipsis)
+ ("r-glue" ,r-glue)
("r-rlang" ,r-rlang)
("r-vctrs" ,r-vctrs)
("r-warp" ,r-warp)))
(define-public r-tidyposterior
(package
(name "r-tidyposterior")
- (version "0.0.3")
+ (version "0.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidyposterior" version))
(sha256
(base32
- "0wsv800w056ziqbnwal7ncmdy4li8cn5yrdx07w35b7j8kl4mwhg"))))
+ "1h1664sjrg6akph6nrk8ynn2kjiswv6gshy35gamam1h4axf6wah"))))
(properties `((upstream-name . "tidyposterior")))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
("r-generics" ,r-generics)
("r-ggplot2" ,r-ggplot2)
- ("r-lifecycle" ,r-lifecycle)
("r-purrr" ,r-purrr)
("r-rlang" ,r-rlang)
("r-rsample" ,r-rsample)
("r-rstanarm" ,r-rstanarm)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)
- ("r-vctrs" ,r-vctrs)))
+ ("r-tune" ,r-tune)
+ ("r-vctrs" ,r-vctrs)
+ ("r-workflowsets" ,r-workflowsets)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://tidyposterior.tidymodels.org")
(define-public r-altmeta
(package
(name "r-altmeta")
- (version "3.2")
+ (version "3.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "altmeta" version))
(sha256
(base32
- "0z252lbsknqp33i0b0xf5r7spr535iq47bv40vgip6nsqhgrl7b0"))))
+ "1xq12hnzxh7kgv2i36xprg4lkvqfmxwz3sq4a1jlq2d5g3narvcm"))))
(properties `((upstream-name . "altmeta")))
(build-system r-build-system)
(propagated-inputs
(define-public r-qtl
(package
(name "r-qtl")
- (version "1.47-9")
+ (version "1.48-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "qtl" version))
(sha256
(base32
- "0hffirsvw9j82cdx6l7vhqn3a7ab52claqjlinv3lswl1nsfg93b"))))
+ "098mgmfj8ndi8yipr9b3f6gbbh78cgp9j7y561nlnhrnyc8bsih9"))))
(build-system r-build-system)
(home-page "https://rqtl.org/")
(synopsis "R package for analyzing QTL experiments in genetics")
(define-public r-phangorn
(package
(name "r-phangorn")
- (version "2.5.5")
+ (version "2.6.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "phangorn" version))
(sha256
(base32
- "0ihkaykqjmf80d8wrk3saphxvnv58zma6pd13633bd3cwanc33f5"))))
+ "08yqz8qlw960x4b52wzrm22f242xnpc8695pjkhy7bi1nzm303ga"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ape" ,r-ape)
("r-matrix" ,r-matrix)
("r-quadprog" ,r-quadprog)
("r-rcpp" ,r-rcpp)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/KlausVigo/phangorn")
(synopsis "Phylogenetic analysis in R")
(description
(define-public r-mlr3misc
(package
(name "r-mlr3misc")
- (version "0.7.0")
+ (version "0.8.0")
(source (origin
(method url-fetch)
(uri (cran-uri "mlr3misc" version))
(sha256
(base32
- "19k3l2d6wnqvdng0m7p54rrlvwl5457lcy7bg82m2bbpqxi8qch3"))))
+ "0mzicqs8rhzppyd7v3ljqs35k8pp7p2jg5cs7hx21mxr831bwsys"))))
(build-system r-build-system)
(propagated-inputs
`(("r-backports" ,r-backports)
(define-public r-mlr3learners
(package
(name "r-mlr3learners")
- (version "0.4.3")
+ (version "0.4.5")
(source (origin
(method url-fetch)
(uri (cran-uri "mlr3learners" version))
(sha256
(base32
- "1wxlpzz3hpkn77n4ag1v868dmp140j1pmrhynsv5xfgk9fg0w7ri"))))
+ "02v4y32yn1m0akkqzhfg65ib21rgy9iz8db4kdcrvi949clkxnfk"))))
(build-system r-build-system)
(propagated-inputs
`(("r-data-table" ,r-data-table)
(define-public r-bbotk
(package
(name "r-bbotk")
- (version "0.3.1")
+ (version "0.3.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "bbotk" version))
(sha256
(base32
- "1f29wxnxr73c4yp5afk05jqggpm7k1z8wiak8xsyw68h7xflq550"))))
+ "0bd9nxfgsj4ixpgky1mj6knb8l8nivvxpqpyw8vgpkj0za7gp4gr"))))
(properties `((upstream-name . "bbotk")))
(build-system r-build-system)
(propagated-inputs
(define-public r-textshaping
(package
(name "r-textshaping")
- (version "0.3.2")
+ (version "0.3.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "textshaping" version))
(sha256
(base32
- "0fqh4z505b2qriqcj70g2hhdgiawd3w2rs9rqxdwizz5vk8jjygx"))))
+ "0yl3cv6r8k27h4lzbrsikjydhz94skdjmxx4zqzihvb7h3jfnlpn"))))
(properties `((upstream-name . "textshaping")))
(build-system r-build-system)
(inputs
(define-public r-ragg
(package
(name "r-ragg")
- (version "1.1.1")
+ (version "1.1.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ragg" version))
(sha256
(base32
- "0nh1xxrxgdbq9anzkc6k3n519czp9hqyiizakm3m2gl4l4w0vp0q"))))
+ "0q28bwjdxpxm1wlkd8sxdf1m1q8wp4mmzp83d3m09nyy90ydkd8w"))))
(properties `((upstream-name . "ragg")))
(build-system r-build-system)
(inputs
(define-public r-lwgeom
(package
(name "r-lwgeom")
- (version "0.2-5")
+ (version "0.2-6")
(source
- (origin
- (method url-fetch)
- (uri (cran-uri "lwgeom" version))
- (sha256
- (base32
- "0byhjqa2acns8mznl1ngnfygxxxyszvnq66qfg0smhhhdkwr67aa"))))
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "lwgeom" version))
+ (sha256
+ (base32
+ "1733iwinn426bcmgjxp4j0scvbz35rvqkanmw7g7f47l6j7w14vn"))))
(properties `((upstream-name . "lwgeom")))
(build-system r-build-system)
- (inputs `(("geos" ,geos) ("proj" ,proj) ("sqlite" ,sqlite)))
+ (inputs
+ `(("geos" ,geos)
+ ("proj" ,proj)
+ ("sqlite" ,sqlite)
+ ("zlib" ,zlib)))
(propagated-inputs
- `(("r-rcpp" ,r-rcpp)
- ("r-sf" ,r-sf)
- ("r-units" ,r-units)))
+ `(("r-rcpp" ,r-rcpp)
+ ("r-sf" ,r-sf)
+ ("r-units" ,r-units)))
(native-inputs `(("pkg-config" ,pkg-config)))
- (home-page
- "https://github.com/r-spatial/lwgeom/")
- (synopsis
- "Bindings to Selected 'liblwgeom' Functions for Simple Features")
+ (home-page "https://github.com/r-spatial/lwgeom/")
+ (synopsis "Bindings to Selected 'liblwgeom' Functions for Simple Features")
(description
- "Access to selected functions found in
+ "Access to selected functions found in
@url{https://github.com/postgis/postgis/tree/master/liblwgeom,liblwgeom}, the
light-weight geometry library used by @url{http://postgis.net/,PostGIS}.")
(license license:gpl2)))
(define-public r-stars
(package
(name "r-stars")
- (version "0.5-1")
+ (version "0.5-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "stars" version))
(sha256
(base32
- "0ybk899rc0rpf2cv5kwk78fvis5xnr255hfcy5khdxsxdqgl0m9j"))))
+ "0w2svw02ywvclq0nsnjns1n0rfr54q7x30y64y14n7zfr969ly1n"))))
(properties `((upstream-name . "stars")))
(build-system r-build-system)
(propagated-inputs
differential expression analysis, RNAseq data and related problems.")
;; Any version of the LGPL
(license license:lgpl3+)))
+
+(define-public r-randomforestsrc
+ (package
+ (name "r-randomforestsrc")
+ (version "2.9.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "randomForestSRC" version))
+ (sha256
+ (base32
+ "05ifvj49jv0n5p6k46milpgj9r10sc5aw23fypyyibdgwpwvwixw"))))
+ (properties
+ `((upstream-name . "randomForestSRC")))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/randomForestSRC/")
+ (synopsis "Random forests for survival, regression, and classification")
+ (description
+ "This package implements fast OpenMP parallel computing of Breiman's
+random forests for survival, competing risks, regression and classification
+based on Ishwaran and Kogalur's popular random survival forests (RSF) package.
+It handles missing data and now includes multivariate, unsupervised forests,
+quantile regression and solutions for class imbalanced data. It provides a
+fast interface using subsampling and confidence regions for variable
+importance.")
+ (license license:gpl3+)))