+
+(define-public muparser
+ (package
+ (name "muparser")
+ (version "2.2.5")
+ (source
+ (origin
+ (method svn-fetch)
+ (uri (svn-reference
+ (url "http://muparser.googlecode.com/svn/trunk/")
+ (revision 34)))
+ (sha256
+ (base32
+ "1d6bdbhx9zj3srwj3m7c9hvr18gnx1fx43h6d25my7q85gicpcwn"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:configure-flags '("--enable-samples=no")
+ #:tests? #f)) ;no "check" target
+ (home-page "http://muparser.beltoforion.de/")
+ (synopsis "Fast parser library for mathematical expressions")
+ (description
+ "muParser is an extensible high performance math parser library. It is
+based on transforming an expression into a bytecode and precalculating
+constant parts of it.")
+ (license license:expat)))
+
+(define-public openblas
+ (package
+ (name "openblas")
+ (version "0.2.13")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/xianyi/OpenBLAS/tarball/v"
+ version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1asg5mix13ipxgj5h2yj2p0r8km1di5jbcjkn5gmhb37nx7qfv6k"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:tests? #f ;no "check" target
+ #:substitutable? #f ;force local build because of CPU detection
+ #:make-flags
+ (list (string-append "PREFIX=" (assoc-ref %outputs "out"))
+ "SHELL=bash"
+ "NO_LAPACK=1")
+ ;; no configure script
+ #:phases (alist-delete 'configure %standard-phases)))
+ (inputs
+ `(("fortran" ,gfortran-4.8)))
+ (native-inputs
+ `(("cunit" ,cunit)
+ ("perl" ,perl)))
+ (home-page "http://www.openblas.net/")
+ (synopsis "Optimized BLAS library based on GotoBLAS")
+ (description
+ "OpenBLAS is a BLAS library forked from the GotoBLAS2-1.13 BSD version.")
+ (license license:bsd-3)))
+
+(define-public openlibm
+ (package
+ (name "openlibm")
+ (version "0.4.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/JuliaLang/openlibm/archive/v"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0cwqqqlblj3kzp9aq1wnpfs1fl0qd1wp1xzm5shb09w06i4rh9nn"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:make-flags
+ (list (string-append "prefix=" (assoc-ref %outputs "out")))
+ #:phases
+ ;; no configure script
+ (alist-delete 'configure %standard-phases)
+ #:tests? #f)) ;the tests are part of the default target
+ (home-page "http://openlibm.org/")
+ (synopsis "Portable C mathematical library (libm)")
+ (description
+ "OpenLibm is an effort to have a high quality, portable, standalone C
+mathematical library (libm). It can be used standalone in applications and
+programming language implementations. The project was born out of a need to
+have a good libm for the Julia programming langage that worked consistently
+across compilers and operating systems, and in 32-bit and 64-bit
+environments.")
+ ;; See LICENSE.md for details.
+ (license (list license:expat
+ license:isc
+ license:bsd-2
+ license:public-domain
+ license:lgpl2.1+))))
+
+(define-public openspecfun
+ (package
+ (name "openspecfun")
+ (version "0.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/JuliaLang/openspecfun/archive/v"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0nsa3jjmlhcqkw5ba5ypbn3n0c8b6lc22zzlxnmxkxi9shhdx65z"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:tests? #f ;no "check" target
+ #:make-flags
+ (list (string-append "prefix=" (assoc-ref %outputs "out")))
+ ;; no configure script
+ #:phases (alist-delete 'configure %standard-phases)))
+ (inputs
+ `(("fortran" ,gfortran-4.8)))
+ (home-page "https://github.com/JuliaLang/openspecfun")
+ (synopsis "Collection of special mathematical functions")
+ (description
+ "Openspecfun provides AMOS and Faddeeva. AMOS (from Netlib) is a
+portable package for Bessel Functions of a Complex Argument and Nonnegative
+Order; it contains subroutines for computing Bessel functions and Airy
+functions. Faddeeva allows computing the various error functions of arbitrary
+complex arguments (Faddeeva function, error function, complementary error
+function, scaled complementary error function, imaginary error function, and
+Dawson function); given these, one can also easily compute Voigt functions,
+Fresnel integrals, and similar related functions as well.")
+ ;; Faddeeva is released under the Expat license; AMOS is included as
+ ;; public domain software.
+ (license (list license:expat license:public-domain))))
+
+(define-public suitesparse
+ (package
+ (name "suitesparse")
+ (version "4.4.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "100hdzr0mf4mzlwnqpmwpfw4pymgsf9n3g0ywb1yps2nk1zbkdy5"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:parallel-build? #f ;cholmod build fails otherwise
+ #:tests? #f ;no "check" target
+ #:make-flags
+ (list "CC=gcc"
+ "BLAS=-lblas"
+ "TBB=-ltbb"
+ "CHOLMOD_CONFIG=-DNPARTITION" ;required when METIS is not used
+ (string-append "INSTALL_LIB="
+ (assoc-ref %outputs "out") "/lib")
+ (string-append "INSTALL_INCLUDE="
+ (assoc-ref %outputs "out") "/include"))
+ #:phases
+ (alist-cons-before
+ 'install 'prepare-out
+ ;; README.txt states that the target directories must exist prior to
+ ;; running "make install".
+ (lambda _
+ (mkdir-p (string-append (assoc-ref %outputs "out") "/lib"))
+ (mkdir-p (string-append (assoc-ref %outputs "out") "/include")))
+ ;; no configure script
+ (alist-delete 'configure %standard-phases))))
+ (inputs
+ `(("tbb" ,tbb)
+ ("lapack" ,lapack)))
+ (home-page "http://faculty.cse.tamu.edu/davis/suitesparse.html")
+ (synopsis "Suite of sparse matrix software")
+ (description
+ "SuiteSparse is a suite of sparse matrix algorithms, including: UMFPACK,
+multifrontal LU factorization; CHOLMOD, supernodal Cholesky; SPQR,
+multifrontal QR; KLU and BTF, sparse LU factorization, well-suited for circuit
+simulation; ordering methods (AMD, CAMD, COLAMD, and CCOLAMD); CSparse and
+CXSparse, a concise sparse Cholesky factorization package; and many other
+packages.")
+ ;; LGPLv2.1+:
+ ;; AMD, CAMD, BTF, COLAMD, CCOLAMD, CSparse, CXSparse, KLU, LDL
+ ;; GPLv2+:
+ ;; GPUQREngine, RBio, SuiteSparse_GPURuntime, SuiteSparseQR, UMFPACK
+ (license (list license:gpl2+ license:lgpl2.1+))))
+
+(define-public atlas
+ (package
+ (name "atlas")
+ (version "3.10.2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "mirror://sourceforge/math-atlas/atlas"
+ version ".tar.bz2"))
+ (sha256
+ (base32
+ "0bqh4bdnjdyww4mcpg6kn0x7338mfqbdgysn97dzrwwb26di7ars"))))
+ (build-system gnu-build-system)
+ (home-page "http://math-atlas.sourceforge.net/")
+ (inputs `(("gfortran" ,gfortran-4.8)
+ ("lapack-tar" ,(package-source lapack))))
+ (outputs '("out" "doc"))
+ ;; For the moment we drop support for MIPS at it fails to compile. See
+ ;; https://lists.gnu.org/archive/html/guix-devel/2014-11/msg00516.html
+ (supported-systems (delete "mips64el-linux" %supported-systems))
+ (arguments
+ `(#:parallel-build? #f
+ #:parallel-tests? #f
+
+ ;; ATLAS tunes itself for the machine it is built on, as explained at
+ ;; <http://lists.gnu.org/archive/html/guix-devel/2014-10/msg00305.html>.
+ ;; For this reason, we want users to build it locally instead of using
+ ;; substitutes.
+ #:substitutable? #f
+
+ #:modules ((srfi srfi-26)
+ (srfi srfi-1)
+ (guix build gnu-build-system)
+ (guix build utils))
+ #:configure-flags
+ `(;; Generate position independent code suitable for dynamic libraries
+ ;; and use WALL timer to get more accurate timing.
+ "-Fa" "alg" "-fPIC" "-D" "c" "-DWALL"
+ ;; Set word width.
+ "-b"
+ ,,(if (string-match "64" (%current-system))
+ "64"
+ "32")
+ ;; Disable parallel build as it gives errors: atlas_pthread.h is
+ ;; needed to compile C files before it is generated.
+ "-Ss" "pmake" "make -j 1"
+ ;; Probe is failing for MIPS. We therefore define the system
+ ;; architecture explicitly by setting (-A) MACHINETYPE = 49
+ ;; 'MIPSR1xK' and (-V) ISA = 1 'none'.
+ ,,@(if (string-prefix? "mips" (%current-system))
+ (list "-A" "49" "-V" "1")
+ (list))
+ ;; Generate shared libraries.
+ "--shared"
+ ;; Build a full LAPACK library.
+ ,(string-append "--with-netlib-lapack-tarfile="
+ (assoc-ref %build-inputs "lapack-tar")))
+ #:phases
+ (alist-cons-after
+ 'install 'install-doc
+ (lambda* (#:key outputs inputs #:allow-other-keys)
+ (let ((doc (string-append (assoc-ref outputs "doc")
+ "/share/doc/atlas")))
+ (mkdir-p doc)
+ (fold (lambda (file previous)
+ (and previous (zero? (system* "cp" file doc))))
+ #t (find-files "../ATLAS/doc" ".*"))))
+ (alist-cons-after
+ 'check 'check-pt
+ (lambda _ (zero? (system* "make" "ptcheck")))
+ ;; Fix files required to run configure.
+ (alist-cons-before
+ 'configure 'fix-/bin/sh
+ (lambda _
+ ;; Use `sh', not `/bin/sh'.
+ (substitute* (find-files "." "Makefile|configure|SpewMakeInc\\.c")
+ (("/bin/sh")
+ "sh")))
+ ;; Fix /bin/sh in generated make files.
+ (alist-cons-after
+ 'configure 'fix-/bin/sh-in-generated-files
+ (lambda _
+ (substitute* (find-files "." "^[Mm]ake\\.inc.*")
+ (("/bin/sh")
+ "sh")))
+ ;; ATLAS configure program does not accepts the default flags
+ ;; passed by the 'gnu-build-system'.
+ (alist-replace
+ 'configure
+ (lambda* (#:key native-inputs inputs outputs
+ (configure-flags '())
+ #:allow-other-keys #:rest args)
+ (let* ((prefix (assoc-ref outputs "out"))
+ (bash (or (and=> (assoc-ref
+ (or native-inputs inputs) "bash")
+ (cut string-append <> "/bin/bash"))
+ "/bin/sh"))
+ (flags `(,(string-append "--prefix=" prefix)
+ ,@configure-flags))
+ (abs-srcdir (getcwd))
+ (srcdir (string-append "../" (basename abs-srcdir))))
+ (format #t "source directory: ~s (relative from build: ~s)~%"
+ abs-srcdir srcdir)
+ (mkdir "../build")
+ (chdir "../build")
+ (format #t "build directory: ~s~%" (getcwd))
+ (format #t "configure flags: ~s~%" flags)
+ (zero? (apply system* bash
+ (string-append srcdir "/configure")
+ flags))))
+ %standard-phases)))))))
+ (synopsis "Automatically Tuned Linear Algebra Software")
+ (description
+ "ATLAS is an automatically tuned linear algebra software library
+providing C and Fortran77 interfaces to a portably efficient BLAS
+implementation, as well as a few routines from LAPACK.
+
+Optimization occurs at build time. For this reason, the library is built on
+the machine where it is installed, without resorting to pre-built substitutes.
+
+Before building the library, CPU throttling should be disabled. This can be
+done in the BIOS, or, on GNU/Linux, with the following commands:
+
+cpufreq-selector -g performance -c 0
+...
+cpufreq-selector -g performance -c N-1
+
+where N is the number of cores of your CPU. Failure to do so will result in a
+library with poor performance.")
+ (license license:bsd-3)))
+
+(define-public glm
+ (package
+ (name "glm")
+ (version "0.9.6.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "mirror://sourceforge/ogl-math/glm-"
+ version ".zip"))
+ (sha256
+ (base32
+ "1cnjmi033a16a95v6xfkr1bvfmkd26hzdjka8j1819hgn5b1nr8l"))))
+ (build-system cmake-build-system)
+ (native-inputs
+ `(("unzip" ,unzip)))
+ (home-page "http://glm.g-truc.net")
+ (synopsis "OpenGL Mathematics library")
+ (description "OpenGL Mathematics (GLM) is a header-only C++ mathematics
+library for graphics software based on the OpenGL Shading Language (GLSL)
+specifications.")
+ (license license:expat)))