(native-inputs
`(("python-py" ,python-py)
("python-pytest" ,python-pytest-bootstrap)))
- (home-page "http://pypi.python.org/pypi/six/")
+ (home-page "https://pypi.python.org/pypi/six/")
(synopsis "Python 2 and 3 compatibility utilities")
(description
"Six is a Python 2 and 3 compatibility library. It provides utility
(arguments
`(#:phases
(modify-phases %standard-phases
- (add-before 'build 'set-environment-variables
- (lambda* (#:key inputs #:allow-other-keys)
- (call-with-output-file "site.cfg"
- (lambda (port)
- (format port
- "[openblas]
+ (add-before 'build 'configure-blas-lapack
+ (lambda* (#:key inputs #:allow-other-keys)
+ (call-with-output-file "site.cfg"
+ (lambda (port)
+ (format port
+ "[openblas]
libraries = openblas
library_dirs = ~a/lib
include_dirs = ~a/include
library_dirs = ~a/lib
include_dirs = ~a/include
"
- (assoc-ref inputs "openblas")
- (assoc-ref inputs "openblas")
- (assoc-ref inputs "lapack")
- (assoc-ref inputs "lapack"))))
- ;; Make /gnu/store/...-bash-.../bin/sh the default shell, instead of
- ;; /bin/sh.
- (substitute* "numpy/distutils/exec_command.py"
- (("(os.environ.get\\('SHELL', ')(/bin/sh'\\))" match match-start match-end)
- (string-append match-start (assoc-ref inputs "bash") match-end)))
- ;; Use "gcc" executable, not "cc".
- (substitute* "numpy/distutils/system_info.py"
- (("c = distutils\\.ccompiler\\.new_compiler\\(\\)")
- "c = distutils.ccompiler.new_compiler(); c.set_executables(compiler='gcc',compiler_so='gcc',linker_exe='gcc',linker_so='gcc -shared')"))
- #t))
- ;; Tests can only be run after the library has been installed and not
- ;; within the source directory.
- (delete 'check)
- (add-after 'install 'check
- (lambda* (#:key outputs inputs #:allow-other-keys)
- ;; Make installed package available for running the tests
- (add-installed-pythonpath inputs outputs)
- (with-directory-excursion "/tmp"
- (zero? (system* "python" "-c"
- "import numpy; numpy.test(verbose=2)"))))))))
+ (assoc-ref inputs "openblas")
+ (assoc-ref inputs "openblas")
+ (assoc-ref inputs "lapack")
+ (assoc-ref inputs "lapack"))))
+ #t))
+ (add-before 'build 'fix-executable-paths
+ (lambda* (#:key inputs #:allow-other-keys)
+ ;; Make /gnu/store/...-bash-.../bin/sh the default shell,
+ ;; instead of /bin/sh.
+ (substitute* "numpy/distutils/exec_command.py"
+ (("(os.environ.get\\('SHELL', ')(/bin/sh'\\))" match match-start match-end)
+ (string-append match-start (assoc-ref inputs "bash") match-end)))
+ ;; Use "gcc" executable, not "cc".
+ (substitute* "numpy/distutils/system_info.py"
+ (("c = distutils\\.ccompiler\\.new_compiler\\(\\)")
+ "c = distutils.ccompiler.new_compiler(); c.set_executables(compiler='gcc',compiler_so='gcc',linker_exe='gcc',linker_so='gcc -shared')"))
+ #t))
+ ;; Tests can only be run after the library has been installed and not
+ ;; within the source directory.
+ (delete 'check)
+ (add-after 'install 'check
+ (lambda* (#:key outputs inputs #:allow-other-keys)
+ ;; Make installed package available for running the tests
+ (add-installed-pythonpath inputs outputs)
+ (with-directory-excursion "/tmp"
+ (zero? (system* "python" "-c"
+ "import numpy; numpy.test(verbose=2)"))))))))
(home-page "http://www.numpy.org/")
(synopsis "Fundamental package for scientific computing with Python")
(description "NumPy is the fundamental package for scientific computing
(define-public python2-numpy-next
(package-with-python2 python-numpy-next))
+;; NOTE: NumPy 1.8 is packaged only for Python 2 because it is of
+;; interest only for legacy code going back to NumPy's predecessor
+;; Numeric.
+(define-public python2-numpy-1.8
+ (package (inherit python2-numpy)
+ (version "1.8.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/numpy/numpy/archive/v" version ".tar.gz"))
+ (file-name (string-append "python2-numpy-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0sc20gz1b17xnyrkp5frca3ql5qfalpv916hfg2kqxpwr6jg0f1g"))))
+ (arguments
+ (substitute-keyword-arguments (package-arguments python2-numpy)
+ ((#:phases phases)
+ `(modify-phases ,phases
+ (replace 'configure-blas-lapack
+ (lambda* (#:key inputs #:allow-other-keys)
+ (call-with-output-file "site.cfg"
+ (lambda (port)
+ (format port
+ "[openblas]
+libraries = openblas,lapack
+library_dirs = ~a/lib:~a/lib
+include_dirs = ~a/include:~a/include
+"
+ (assoc-ref inputs "openblas")
+ (assoc-ref inputs "lapack")
+ (assoc-ref inputs "openblas")
+ (assoc-ref inputs "lapack"))))
+ #t))))))
+ (description "NumPy is the fundamental package for scientific computing
+with Python. It contains among other things: a powerful N-dimensional array
+object, sophisticated (broadcasting) functions, tools for integrating C/C++
+and Fortran code, useful linear algebra, Fourier transform, and random number
+capabilities. Version 1.8 is the last one to contain the numpy.oldnumeric API
+that includes the compatibility layer numpy.oldnumeric with NumPy's predecessor
+Numeric.")
+ (license license:bsd-3)))
+
(define-public python-munch
(package
(name "python-munch")
`(("python-colormath" ,python-colormath)))
(native-inputs
`(("python-nose" ,python-nose)))
- (home-page "http://github.com/jsvine/spectra")
+ (home-page "https://github.com/jsvine/spectra")
(synopsis "Color scales and color conversion")
(description
"This package provides a Python library intended to make color math,
(zero? (system* "python" "-c"
"import scipy; scipy.test('full')")))
#t)))))
- (home-page "http://www.scipy.org/")
+ (home-page "https://www.scipy.org/")
(synopsis "The Scipy library provides efficient numerical routines")
(description "The SciPy library is one of the core packages that make up
the SciPy stack. It provides many user-friendly and efficient numerical
services for your Python modules and applications.")
(license license:lgpl3+)))
+(define-public python-olefile
+ (package
+ (name "python-olefile")
+ (version "0.44")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/decalage2/olefile/archive/v"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1wmxbrhyqjry2000zx0zdhqdqxhgi06nz7sbzjlh222q2zjv1gpj"))))
+ (build-system python-build-system)
+ (home-page
+ "https://www.decalage.info/python/olefileio")
+ (synopsis "Read and write Microsoft OLE2 files.")
+ (description
+ "@code{olefile} can parse, read and write Microsoft OLE2 files (Structured
+Storage or Compound Document, Microsoft Office). It is an improved version of
+the OleFileIO module from PIL, the Python Image Library.")
+ (license license:bsd-3)))
+
+(define-public python2-olefile
+ (package-with-python2 python-olefile))
+
(define-public python-pillow
(package
(name "python-pillow")
- (version "3.3.3")
+ (version "4.3.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "Pillow" version))
- (patches (search-patches "python-pillow-freetype-2.7-test-failure.patch"))
(sha256
(base32
- "0xkv0p1d73gz0a1qaasf0ai4262g8f334j07vd60bjrxs2wr3nmj"))))
+ "09xmn7rl6840sli2iz1k3fgxfgmri2nqz6vkinmb9mgg8ifp2z59"))
+ (patch-flags '("-p1" "--binary"))
+ (patches (search-patches "python-pillow-fix-failing-tests.patch"))))
(build-system python-build-system)
(native-inputs
`(("python-nose" ,python-nose)))
("openjpeg" ,openjpeg)
("libtiff" ,libtiff)
("libwebp" ,libwebp)))
+ (propagated-inputs
+ `(("python-olefile" ,python-olefile)))
(arguments
`(#:phases (modify-phases %standard-phases
(add-after
(replace 'check
(lambda _ (zero? (system* "./convert-py3k")))))))
(home-page
- "http://www.crummy.com/software/BeautifulSoup/bs4/")
+ "https://www.crummy.com/software/BeautifulSoup/bs4/")
(synopsis
"Python screen-scraping library")
(description
(arguments
;; There are no tests.
`(#:tests? #f))
- (home-page "http://pypi.python.org/pypi/termcolor")
+ (home-page "https://pypi.python.org/pypi/termcolor")
(synopsis "ANSII Color formatting for terminal output")
(description
"This package provides ANSII Color formatting for output in terminals.")
encryption and decryption, signing and verifying signatures, and key
generation according to PKCS#1 version 1.5. It can be used as a Python
library as well as on the command line.")
- (home-page "http://stuvel.eu/rsa")
+ (home-page "https://stuvel.eu/rsa")
(license license:asl2.0)))
(define-public python2-rsa
;; but it could be annoying/difficult.
;; We can enable tests for the Python 2 version, though, and do below.
#:tests? #f))
- (home-page "http://bitbucket.org/runeh/anyjson/")
+ (home-page "https://bitbucket.org/runeh/anyjson/")
(synopsis
"Wraps best available JSON implementation in a common interface")
(description
(build-system python-build-system)
(native-inputs
`(("python-pytest" ,python-pytest)))
- (home-page "http://bitbucket.org/mchaput/whoosh")
+ (home-page "https://bitbucket.org/mchaput/whoosh")
(synopsis "Full text indexing, search, and spell checking library")
(description
"Whoosh is a fast, pure-Python full text indexing, search, and spell
`(#:python ,python-2))
(native-inputs
`(("python2-six" ,python2-six)))
- (home-page "http://pypi.python.org/pypi/pathlib2/")
+ (home-page "https://pypi.python.org/pypi/pathlib2/")
(synopsis "Object-oriented file system paths - backport of standard
pathlib module")
(description "The goal of pathlib2 is to provide a backport of standard
(zero? (system* "python" "test/test_pbkdf2.py")))))))
(propagated-inputs
`(("python-pycrypto" ,python-pycrypto))) ; optional
- (home-page "http://www.dlitz.net/software/python-pbkdf2/")
+ (home-page "https://www.dlitz.net/software/python-pbkdf2/")
(synopsis "Password-based key derivation")
(description "This module implements the password-based key derivation
function, PBKDF2, specified in RSA PKCS#5 v2.0.
("python-nose" ,python-nose)))
(propagated-inputs
`(("python-six" ,python-six)))
- (home-page "http://github.com/ralphbean/ansi2html")
+ (home-page "https://github.com/ralphbean/ansi2html")
(synopsis "Convert ANSI-decorated console output to HTML")
(description
"@command{ansi2html} is a Python library and command line utility for
(base32
"192pclzs2y0yaywqkrlvd0x73740q310kvqvm6jldhi619mq59wi"))))
(build-system python-build-system)
- (home-page "http://pypi.python.org/pypi/rfc3987")
+ (home-page "https://pypi.python.org/pypi/rfc3987")
(synopsis "Parsing and validation of URIs (RFC 3986) and IRIs (RFC 3987)")
(description "@code{rfc3987} provides routines for parsing and
validation of URIs (see RFC 3986) and IRIs (see RFC 3987).")
(base32
"1bxffaf5yz2cph8ki55vdvdypbwkvn2xr1firlcy62vqbzf1jivq"))))
(build-system python-build-system)
- (home-page "http://github.com/syrusakbary/validate_email")
+ (home-page "https://github.com/syrusakbary/validate_email")
(synopsis "Verifies if an email address is valid and really exists")
(description "@code{validate_email} can be used to verify if an email
address is valid and really exists.")
`(("python-jsonschema" ,python-jsonschema)
("python-six" ,python-six)))
(home-page
- "http://github.com/Yelp/swagger_spec_validator")
+ "https://github.com/Yelp/swagger_spec_validator")
(synopsis "Validation of Swagger specifications")
(description "@code{swagger_spec_validator} provides a library for
validating Swagger API specifications.")
(define-public python2-tempdir
(package-with-python2 python-tempdir))
+(define-public python-activepapers
+ (package
+ (name "python-activepapers")
+ (version "0.2.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "ActivePapers.Py" version))
+ (sha256
+ (base32
+ "12wkhjh90ffipjzv10swndp2xv9hd7xrxvg6v0n4n3i411pj4xb8"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:modules ((ice-9 ftw)
+ (srfi srfi-1)
+ (guix build utils)
+ (guix build python-build-system))
+
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'delete-python2-code
+ (lambda _
+ (for-each delete-file
+ '("lib/activepapers/builtins2.py"
+ "lib/activepapers/standardlib2.py"
+ "lib/activepapers/utility2.py"))))
+ (replace 'check
+ (lambda _
+ ;; Deactivate the test cases that download files
+ (setenv "NO_NETWORK_ACCESS" "1")
+ ;; For some strange reason, some tests fail if nosetests runs all
+ ;; test modules in a single execution. They pass if each test
+ ;; module is run individually.
+ (for-each (lambda (filename)
+ (invoke "nosetests"
+ (string-append "tests/" filename)))
+ (scandir "tests"
+ (lambda (filename)
+ (string-suffix? ".py" filename)))))))))
+ (native-inputs
+ `(("python-tempdir" ,python-tempdir)
+ ("python-nose" ,python-nose)))
+ (propagated-inputs
+ `(("python-h5py" ,python-h5py)))
+ (home-page "http://www.activepapers.org/")
+ (synopsis "Executable papers for scientific computing")
+ (description
+ "ActivePapers is a tool for working with executable papers, which
+combine data, code, and documentation in single-file packages,
+suitable for publication as supplementary material or on repositories
+such as figshare or Zenodo.")
+ (properties `((python2-variant . ,(delay python2-activepapers))))
+ (license license:bsd-3)))
+
+(define-public python2-activepapers
+ (let ((base (package-with-python2
+ (strip-python2-variant python-activepapers))))
+ (package
+ (inherit base)
+ (arguments
+ (substitute-keyword-arguments (package-arguments base)
+ ((#:phases phases)
+ `(modify-phases ,phases
+ (delete 'delete-python2-code)
+ (add-after 'unpack 'delete-python3-code
+ (lambda _
+ (for-each delete-file
+ '("lib/activepapers/builtins3.py"
+ "lib/activepapers/standardlib3.py"
+ "lib/activepapers/utility3.py")))))))))))
+
+(define-public python-semver
+ (package
+ (name "python-semver")
+ (version "2.7.9")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "semver" version))
+ (sha256
+ (base32
+ "0hhgqppchv59rqj0yzi1prdg2nfsywqmjsqy2rycyxm0hvxmbyqz"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'patch-test-requirements
+ (lambda _
+ (substitute* "setup.py"
+ ;; Our Python is new enough.
+ (("'virtualenv<14\\.0\\.0'") "'virtualenv'"))
+ #t)))))
+ (native-inputs
+ `(("python-tox" ,python-tox)
+ ("python-virtualenv" ,python-virtualenv)))
+ (home-page "https://github.com/k-bx/python-semver")
+ (synopsis "Python helper for Semantic Versioning")
+ (description "This package provides a Python library for
+@url{Semantic Versioning, http://semver.org/}.")
+ (license license:bsd-3)))
+
+(define-public python2-semver
+ (package-with-python2 python-semver))
HCoop / jackhill / guix / guix.git / blobdiff