(define-public r-xts
(package
(name "r-xts")
- (version "0.12-0")
+ (version "0.12.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "xts" version))
(sha256
(base32
- "0q4cc8ynp7ndmgll1jj3lxyl6wmgg89ad3wq09kjc2ngszdfc4fz"))))
+ "0b6a7mpyk9aw6axas7nz01gadczprwwfhii01fz31z26z555i06n"))))
(build-system r-build-system)
(propagated-inputs `(("r-zoo" ,r-zoo)))
(home-page "https://github.com/joshuaulrich/xts")
(define-public r-processx
(package
(name "r-processx")
- (version "3.4.3")
+ (version "3.4.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "processx" version))
(sha256
- (base32 "07dhzijqnj2zkm3qrk4ppsv8wscn8ysdsjbidlg9zrbj1wcg4izj"))))
+ (base32 "0as8lzfpbz5rcpcpczvrrgd67whngkmw12q33r2yn3k7lq80z95a"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ps" ,r-ps)
(define-public r-xfun
(package
(name "r-xfun")
- (version "0.16")
+ (version "0.17")
(source
(origin
(method url-fetch)
(uri (cran-uri "xfun" version))
(sha256
- (base32 "1x7b71xhbl44fyccz69l24nbgyxawm2km90s4h1l3zr5z2vly0sg"))))
+ (base32 "1zd5qi1rrz3b1lpisapa2yscanz39ghaamf28g7aq3z9ai2a2ymj"))))
(build-system r-build-system)
;; knitr itself depends on xfun
#;
(define-public r-tsa
(package
(name "r-tsa")
- (version "1.2")
+ (version "1.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "TSA" version))
(sha256
(base32
- "0gjfqibwdznz0nka95k4fjm935svxjpnqfywwz403crn2lh30h6q"))))
+ "1bv5q609lhmrcxnjnvcj497fbjlv89zwa8q918hw4iki5nkvwwdb"))))
(properties `((upstream-name . "TSA")))
(build-system r-build-system)
(propagated-inputs
`(("r-leaps" ,r-leaps)
("r-locfit" ,r-locfit)
- ("r-mgcv" ,r-mgcv)))
+ ("r-mgcv" ,r-mgcv)
+ ("r-tseries" ,r-tseries)))
(home-page "https://homepage.divms.uiowa.edu/~kchan/TSA.htm")
(synopsis "Time series analysis")
(description
(define-public r-extradistr
(package
(name "r-extradistr")
- (version "1.8.11")
+ (version "1.9.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "extraDistr" version))
(sha256
(base32
- "1vvqv1d4hxa025gmm8cbiph63qsqy87l3ri5idd524gyz3chbcl3"))))
+ "1gypnbvdzczl0mvznvy8r7hzsvc5gvdvi2mmzj21cqdw9n63944r"))))
(properties `((upstream-name . "extraDistr")))
(build-system r-build-system)
(propagated-inputs
(define-public r-officer
(package
(name "r-officer")
- (version "0.3.13")
+ (version "0.3.14")
(source
(origin
(method url-fetch)
(uri (cran-uri "officer" version))
(sha256
(base32
- "15v5dishdsrw95nj6f7x23llzla3sgbvw35ibdk8ld3miwzxb2kr"))))
+ "1nyv4710bcd2afh1l1qiy5zrspjcdvc7mrzz5189dwy9xvgxi31h"))))
(build-system r-build-system)
(propagated-inputs
`(("r-magrittr" ,r-magrittr)
(define-public r-insight
(package
(name "r-insight")
- (version "0.9.1")
+ (version "0.9.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "insight" version))
(sha256
(base32
- "0d6yzg5s0mz07bzxwfc77rpv4l20jpzrnhviqgkp02qw6a4nrwa6"))))
+ "0853kq4j8kic8z2gh5mxfqkwxjs4bdphlajzyvxka7af4r04bfmi"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(define-public r-flextable
(package
(name "r-flextable")
- (version "0.5.10")
+ (version "0.5.11")
(source
(origin
(method url-fetch)
(uri (cran-uri "flextable" version))
(sha256
(base32
- "1j7yvjiavar21ywck6nyz0p6bd66fnj99bq8lljdz4rrl3314yb8"))))
+ "1yb872izzr9yja7q2vfqm0imcbcgs0fvi4b19arhdlwwa42figj4"))))
(build-system r-build-system)
(propagated-inputs
`(("r-base64enc" ,r-base64enc)
(define-public r-mosaiccore
(package
(name "r-mosaiccore")
- (version "0.6.0")
+ (version "0.8.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "mosaicCore" version))
(sha256
- (base32 "1klw97h6lchw1cpcl8s637ikcl428cckmjq0czi7mibh9q9mw72z"))))
+ (base32 "00va6x1i8d3wkm1bgsms9dsjfn5a1l43prpl9pqirgq3zm85hrqj"))))
(properties `((upstream-name . "mosaicCore")))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
- ("r-lazyeval" ,r-lazyeval)
("r-mass" ,r-mass)
("r-rlang" ,r-rlang)
("r-tidyr" ,r-tidyr)))
(define-public r-mosaicdata
(package
(name "r-mosaicdata")
- (version "0.18.0")
+ (version "0.20.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "mosaicData" version))
(sha256
- (base32 "0cx5dg26ha7nzkdyghkbbd6ikncj60qv1538az77lfgn2jylvkbz"))))
+ (base32 "05mrwvs7awhpv2gvk0jjva74gndfgh2cl17slxcjhwlpga8nmxji"))))
(properties `((upstream-name . "mosaicData")))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/mosaicData/")
(define-public r-performance
(package
(name "r-performance")
- (version "0.4.8")
+ (version "0.5.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "performance" version))
(sha256
(base32
- "1gl3m1pw0wrj9m9cgd0vzbj9swfwjg4aa40gpliplb9y7dcmgi4l"))))
+ "01csmn52d6rhlmcj7gi6ckc6v6a8pymnrpx9l729h13igxsnaf28"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bayestestr" ,r-bayestestr)
(define-public r-ggeffects
(package
(name "r-ggeffects")
- (version "0.15.1")
+ (version "0.16.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggeffects" version))
(sha256
(base32
- "12z58casz0yl1w7nfs64bz4miz0mmc300ap3rz4d2cc4z0rg0r47"))))
+ "0v8n8jmp6x1iagbyc5jgf1d29yz5hd3ibnyl9n9f73vqq5bzj0p5"))))
(build-system r-build-system)
(propagated-inputs
`(("r-insight" ,r-insight)
(define-public r-rcpphnsw
(package
(name "r-rcpphnsw")
- (version "0.2.0")
+ (version "0.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "RcppHNSW" version))
(sha256
(base32
- "0gqdkw7vkcm544rz45g0hplg836ygzbfwk9gh9wr0817icvdb3qv"))))
+ "01z0plf1i6dyibw4ica8shmijyk1grpqb886hcga72z2cpm4xsx0"))))
(properties `((upstream-name . "RcppHNSW")))
(build-system r-build-system)
(propagated-inputs `(("r-rcpp" ,r-rcpp)))
(define-public r-misc3d
(package
(name "r-misc3d")
- (version "0.8-4")
+ (version "0.9-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "misc3d" version))
(sha256
(base32
- "0qjzpw3h09qi2gfz52b7nhzd95p7yyxsd03fldc9wzzn6wi3vpkm"))))
+ "10jf5r1x588vi54bzaqgi9mgcqlkiga2c3jvmqmk3lavc8fjksd1"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/misc3d/")
(synopsis "Miscellaneous 3D Plots")
(define-public r-rnifti
(package
(name "r-rnifti")
- (version "1.2.1")
+ (version "1.2.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "RNifti" version))
(sha256
(base32
- "1a5s75iwwngzmi7y69j7xkcrrfvjyjrfalv9ldpgwii4cwkbyf10"))))
+ "0h837jdspy071ckij8szqd8149bm113jpqwbclg87is4brsm5jzg"))))
(properties `((upstream-name . "RNifti")))
(build-system r-build-system)
(propagated-inputs `(("r-rcpp" ,r-rcpp)))
(define-public r-fields
(package
(name "r-fields")
- (version "10.3")
+ (version "11.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "fields" version))
(sha256
- (base32 "12k97vfjlz5h8vynirnvik1nyj1iw25n8xl7awmx9mpd6wvgy2s9"))))
+ (base32 "0x8hbl0rn7gnhn7w45wd757g9in27884qr6vy30xrk150qaq941y"))))
(build-system r-build-system)
(propagated-inputs
`(("r-maps" ,r-maps)
(define-public r-etm
(package
(name "r-etm")
- (version "1.1")
+ (version "1.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "etm" version))
(sha256
(base32
- "02yvh473l5qajaymhsxwb235a9r7q3nsig9a9mrfca68xih8yvgd"))))
+ "1hvrplmdpjjpjji663rw0vjbbrzj2nvr04d1nkc8bf46p4ixyxgy"))))
(build-system r-build-system)
(propagated-inputs
`(("r-data-table" ,r-data-table)
(define-public r-shinyjs
(package
(name "r-shinyjs")
- (version "1.1")
+ (version "2.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "shinyjs" version))
(sha256
(base32
- "14k8y313ppj23m9rhlk8jc94x6sbn3qrsnx6xrijiyv8m8dii1l9"))))
+ "1zzq356dvd8ciajy6r5n4ybgx9xk7ydwv25j86xlcsqznkxdkkf2"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
("r-htmltools" ,r-htmltools)
("r-jsonlite" ,r-jsonlite)
("r-shiny" ,r-shiny)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://deanattali.com/shinyjs")
(synopsis "Improve the user experience of your Shiny apps")
(description
(define-public r-deldir
(package
(name "r-deldir")
- (version "0.1-28")
+ (version "0.1-29")
(source
(origin
(method url-fetch)
(uri (cran-uri "deldir" version))
(sha256
(base32
- "12ys8jdcrgzhf9m2yirlqfars397qb0q0pbypahmfa66lgr6wdx5"))))
+ "1vwh8c8zxspyls05q9kgzz5p85i8k8aax5ir45np2bmg0pjvh6kv"))))
(build-system r-build-system)
(native-inputs `(("gfortran" ,gfortran)))
(home-page "https://cran.r-project.org/web/packages/deldir")
(define-public r-sf
(package
(name "r-sf")
- (version "0.9-5")
+ (version "0.9-6")
(source
(origin
(method url-fetch)
(uri (cran-uri "sf" version))
(sha256
(base32
- "0c58asqrvz1pkdkb0lkzwz8cwb43pmxd39z0jp217hk7p7q3ngwf"))))
+ "01yqlnx9v7lzb6g4ywjlncz67cnkizszarnf2dmd4fi8abhw4zs9"))))
(build-system r-build-system)
(inputs
`(("gdal" ,gdal)
that accept short and long options.")
(license license:gpl2+)))
-(define-public r-wgcna
- (package
- (name "r-wgcna")
- (version "1.69")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "WGCNA" version))
- (sha256
- (base32
- "022hkprnrafvggi8pkjffkvk1qlnibmbbxxrni00wkrdbga5589f"))))
- (properties `((upstream-name . "WGCNA")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotationdbi" ,r-annotationdbi)
- ("r-doparallel" ,r-doparallel)
- ("r-dynamictreecut" ,r-dynamictreecut)
- ("r-fastcluster" ,r-fastcluster)
- ("r-foreach" ,r-foreach)
- ("r-go-db" ,r-go-db)
- ("r-hmisc" ,r-hmisc)
- ("r-impute" ,r-impute)
- ("r-rcpp" ,r-rcpp)
- ("r-survival" ,r-survival)
- ("r-matrixstats" ,r-matrixstats)
- ("r-preprocesscore" ,r-preprocesscore)))
- (home-page
- "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/")
- (synopsis "Weighted correlation network analysis")
- (description
- "This package provides functions necessary to perform Weighted
-Correlation Network Analysis on high-dimensional data. It includes functions
-for rudimentary data cleaning, construction and summarization of correlation
-networks, module identification and functions for relating both variables and
-modules to sample traits. It also includes a number of utility functions for
-data manipulation and visualization.")
- (license license:gpl2+)))
-
(define-public r-kernlab
(package
(name "r-kernlab")
(define-public r-dalex
(package
(name "r-dalex")
- (version "1.3.1.1")
+ (version "2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "DALEX" version))
(sha256
(base32
- "0akw1yzhb3shpg6yb89vralqd2z80z5yk9azqaa55dx56as52kjs"))))
+ "1yn61cbqvyycn617pzhd7kgd34xsnmqvj3s10inn2ywycybk7byi"))))
(properties `((upstream-name . "DALEX")))
(build-system r-build-system)
(propagated-inputs
(define-public r-systemfonts
(package
(name "r-systemfonts")
- (version "0.3.0")
+ (version "0.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "systemfonts" version))
(sha256
(base32
- "16n25bin46r0vq59wjdskkb8631gzf7grwnp2wnk0zb9c2qr48ax"))))
+ "0ldxgcayyisp2gcbv4xw9zpb48bp4czi8016kq5nqdqhv1qb3sz0"))))
(properties `((upstream-name . "systemfonts")))
(build-system r-build-system)
(propagated-inputs
(define-public r-parameters
(package
(name "r-parameters")
- (version "0.8.2")
+ (version "0.8.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "parameters" version))
(sha256
(base32
- "0kamszscywvdh4gikl5mmma7s5p7spmhirq3wrgf7x7f4gppbbmh"))))
+ "1vax5p1znq2ddbks2i614hbrnn2x6x71942xx49p813qk8dh284l"))))
(properties `((upstream-name . "parameters")))
(build-system r-build-system)
(propagated-inputs
(define-public r-gamlss
(package
(name "r-gamlss")
- (version "5.1-7")
+ (version "5.2-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "gamlss" version))
(sha256
(base32
- "0ywqwsp4k6jgnicp1gdsglji61l5cnackl52700v8kmkk83bq4c8"))))
+ "1q82md0439si0n7vqbbbdk45sjr0ad7i8mgrn3kwnr4h213pb4nk"))))
(properties `((upstream-name . "gamlss")))
(build-system r-build-system)
(propagated-inputs
(define-public r-forecast
(package
(name "r-forecast")
- (version "8.12")
+ (version "8.13")
(source
(origin
(method url-fetch)
(uri (cran-uri "forecast" version))
(sha256
(base32
- "1ycj5z4wd5a16nlcjy07dqm8jkih240xa02cn4wvysnnhkapyq7b"))))
+ "0vrql5d4v28890np2m6ws1nr1fcl6frs1bz74vfkihkixcmkl3j9"))))
(properties `((upstream-name . "forecast")))
(build-system r-build-system)
(propagated-inputs
(define-public r-scatterpie
(package
(name "r-scatterpie")
- (version "0.1.4")
+ (version "0.1.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "scatterpie" version))
(sha256
(base32
- "0g5sn0iv6c1q7y51j4gbbbnil5089dgk1w4q94c7h5y3x7wfrzqb"))))
+ "0h48l0699lpfagv09f53yismir84945m56qwzk52lc7wxyvkfcp1"))))
(properties `((upstream-name . "scatterpie")))
(build-system r-build-system)
(propagated-inputs
;; Either version
(license (list license:gpl2 license:gpl3))))
-(define-public r-fourcseq
- (package
- (name "r-fourcseq")
- (version "1.22.1")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "FourCSeq" version))
- (sha256
- (base32 "14q1ijnqnbd9xs60sfvyqjfiypjrvhacpwp2v85yfhcxw870cx5b"))))
- (properties `((upstream-name . "FourCSeq")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-biostrings" ,r-biostrings)
- ("r-deseq2" ,r-deseq2)
- ("r-fda" ,r-fda)
- ("r-genomicalignments" ,r-genomicalignments)
- ("r-genomicranges" ,r-genomicranges)
- ("r-ggbio" ,r-ggbio)
- ("r-ggplot2" ,r-ggplot2)
- ("r-gtools" ,r-gtools)
- ("r-lsd" ,r-lsd)
- ("r-matrix" ,r-matrix)
- ("r-reshape2" ,r-reshape2)
- ("r-rsamtools" ,r-rsamtools)
- ("r-rtracklayer" ,r-rtracklayer)
- ("r-summarizedexperiment" ,r-summarizedexperiment)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page
- "https://bioconductor.org/packages/release/bioc/html/FourCSeq.html")
- (synopsis "Analysis of multiplexed 4C sequencing data")
- (description
- "This package is an R package dedicated to the analysis of (multiplexed)
-4C sequencing data. @code{r-fourcseq} provides a pipeline to detect specific
-interactions between DNA elements and identify differential interactions
-between conditions. The statistical analysis in R starts with individual bam
-files for each sample as inputs. To obtain these files, the package contains
-a Python script to demultiplex libraries and trim off primer sequences. With
-a standard alignment software the required bam files can be then be
-generated.")
- (license license:gpl3+)))
-
(define-public r-phylogram
(package
(name "r-phylogram")
(define-public r-rfast
(package
(name "r-rfast")
- (version "2.0.0")
+ (version "2.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "Rfast" version))
(sha256
(base32
- "010dm5h2vayvfbh0zny7i2c7fmn83r2b54849r0b4id3wjpmg3xy"))))
+ "1cq3mcg49hsvqhwn6f4dgsx7f8ma4qnwr5n6s7m22qy57rg31958"))))
(properties `((upstream-name . "Rfast")))
(build-system r-build-system)
(propagated-inputs
(define-public r-seurat
(package
(name "r-seurat")
- (version "3.2.0")
+ (version "3.2.1")
(source (origin
(method url-fetch)
(uri (cran-uri "Seurat" version))
(sha256
(base32
- "1vj3dlsqakgnn4x1jz9fkl2cy0jzc5s65h1c20fnamr7lk45pnf2"))))
+ "0jipc4xpmx56jzc31w6nsl77ah8x8wq7jclg2mxhjql4ixkwmz54"))))
(properties `((upstream-name . "Seurat")))
(build-system r-build-system)
(propagated-inputs
- `(("r-ape" ,r-ape)
- ("r-cluster" ,r-cluster)
+ `(("r-cluster" ,r-cluster)
("r-cowplot" ,r-cowplot)
("r-fitdistrplus" ,r-fitdistrplus)
("r-future" ,r-future)
("r-lmtest" ,r-lmtest)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
+ ("r-matrixstats" ,r-matrixstats)
("r-miniui" ,r-miniui)
("r-patchwork" ,r-patchwork)
("r-pbapply" ,r-pbapply)
(define-public r-diversitree
(package
(name "r-diversitree")
- (version "0.9-13")
+ (version "0.9-14")
(source
(origin
(method url-fetch)
(uri (cran-uri "diversitree" version))
(sha256
(base32
- "00vi4klywi35hd170ksjv3xja3hqqbkcidcnrrlpgv4179k0azix"))))
+ "0xkxw4n1rsagip51smh9k0h0lmnnvsajqcxma7yh95ifdkyrcyy4"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))