;;; Copyright © 2020 Nicolò Balzarotti <nicolo@nixo.xyz>
;;; Copyright © 2020 Tanguy Le Carrour <tanguy@bioneland.org>
;;; Copyright © 2020 Lars-Dominik Braun <ldb@leibniz-psychology.org>
+;;; Copyright © 2020 Guy Fleury Iteriteka <gfleury@disroot.org>
+;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de>
+;;; Copyright © 2020 Vinicius Monego <monego@posteo.net>
;;;
;;; This file is part of GNU Guix.
;;;
#:use-module (gnu packages guile)
#:use-module (gnu packages time)
#:use-module (gnu packages golang)
+ #:use-module (gnu packages icu4c)
#:use-module (gnu packages jemalloc)
#:use-module (gnu packages language)
+ #:use-module (gnu packages libedit)
#:use-module (gnu packages libevent)
#:use-module (gnu packages linux)
+ #:use-module (gnu packages logging)
#:use-module (gnu packages man)
+ #:use-module (gnu packages maths)
+ #:use-module (gnu packages multiprecision)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages onc-rpc)
#:use-module (gnu packages parallel)
#:use-module (gnu packages perl-web)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages popt)
+ #:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages rdf)
#:use-module (gnu packages readline)
+ #:use-module (gnu packages regex)
+ #:use-module (gnu packages rpc)
#:use-module (gnu packages ruby)
#:use-module (gnu packages serialization)
#:use-module (gnu packages sphinx)
#:use-module (guix download)
#:use-module (guix bzr-download)
#:use-module (guix git-download)
+ #:use-module (guix hg-download)
#:use-module (guix build-system emacs)
#:use-module (guix build-system gnu)
#:use-module (guix build-system go)
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/4store/4store.git")
+ (url "https://github.com/4store/4store")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(define-public ephemeralpg
(package
(name "ephemeralpg")
- (version "3.0")
+ (version "3.1")
(source
(origin
(method url-fetch)
"https://eradman.com/ephemeralpg/code/ephemeralpg-"
version ".tar.gz"))
(sha256
- (base32 "1j0g7g114ma7y7sadbng5p1ss1zsm9zpicm77qspym6565733vvh"))))
+ (base32 "1ap22ki8yz6agd0qybcjgs4b9izw1rwwcgpxn3jah2ccfyax34s6"))))
(build-system gnu-build-system)
(arguments
- '(#:make-flags (list "CC=gcc"
+ `(#:make-flags (list (string-append "CC=" ,(cc-for-target))
(string-append "PREFIX=" %output))
#:phases
(modify-phases %standard-phases
(home-page "https://github.com/patientslikeme/es_dump_restore")
(license license:expat)))
+(define-public firebird
+ (package
+ (name "firebird")
+ (version "3.0.7")
+ (source
+ (let ((revision "33374-0"))
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/FirebirdSQL/"
+ "firebird/releases/download/R"
+ (string-replace-substring version "." "_") "/"
+ "Firebird-" version "." revision ".tar.bz2"))
+ (sha256
+ (base32 "0xpy1bncz36c6n28y7kllm1dkrdkn4vb4gw2n43f2351mznmrf5c"))
+ (modules '((guix build utils)))
+ (snippet
+ `(begin
+ (for-each
+ delete-file-recursively
+ (list "extern/btyacc/test" ; TODO: package and remove entirely
+ "extern/editline"
+ "extern/icu"
+ "extern/libtommath"
+ "extern/zlib"
+ "src/include/firebird/impl/boost"
+
+ ;; Missing licence.
+ "builds/install/arch-specific/solaris"
+ "extern/SfIO"
+ "src/msgs/templates.sql"
+
+ ;; Generated files missing sources.
+ "doc/Firebird-3-QuickStart.pdf"
+ (string-append "doc/Firebird-" ,version
+ "-ReleaseNotes.pdf")
+ "doc/README.SecureRemotePassword.html"))
+ #t)))))
+ (build-system gnu-build-system)
+ (outputs (list "debug" "out"))
+ (arguments
+ `(#:configure-flags
+ (let ((out (assoc-ref %outputs "out")))
+ (list (string-append "--with-fbsbin=" out "/sbin")
+ (string-append "--with-fbdoc=" out "/share/doc/"
+ ,name "-" ,version)
+ (string-append "--with-fbconf=" out "/lib/firebird")
+ (string-append "--with-fbintl=" out "/lib/firebird/intl")
+ (string-append "--with-fbmisc=" out "/lib/firebird/misc")
+ (string-append "--with-fbmsg=" out "/lib/firebird")
+ (string-append "--with-fbplugins=" out "/lib/firebird/plugins")
+ (string-append "--with-fbudf=" out "/lib/firebird/UDF")
+ "--with-fbglock=/run/firebird"
+ "--with-fblog=/var/log/firebird"
+ "--with-fbhelp=/var/lib/firebird/system"
+ "--with-fbsecure-db=/var/lib/firebird/secure"
+ "--without-fbsample"
+ "--without-fbsample-db"
+ "--with-system-editline"))
+ #:make-flags
+ (list (string-append "CC=" ,(cc-for-target))
+ ;; The plugins/ can't find libfbclient otherwise.
+ (string-append "LDFLAGS=-Wl,-rpath="
+ (assoc-ref %outputs "out") "/lib"))
+ #:tests? #f ; no test suite
+ #:modules ((guix build gnu-build-system)
+ (guix build utils)
+ (srfi srfi-26))
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'use-system-boost
+ (lambda _
+ (substitute* "src/include/firebird/Message.h"
+ (("\"\\./impl/boost/preprocessor/seq/for_each_i\\.hpp\"")
+ "<boost/preprocessor/seq/for_each_i.hpp>")
+ (("FB_BOOST_") "BOOST_"))
+ #t))
+ (add-after 'unpack 'patch-installation
+ (lambda _
+ (substitute*
+ "builds/install/arch-specific/linux/makeInstallImage.sh.in"
+ (("/bin/sh") (which "bash"))
+ ;; Remove shell script helpers from $PATH.
+ (("(addLibs|cp) .*\\.sh .*@FB_SBINDIR@") ":")
+ ;; Put files where Guix users expect them.
+ (("(License\\.txt.*)@FB_CONFDIR" match)
+ (string-append match "@FB_DOCDIR@"))
+ (("@FB_CONFDIR@(.*License\\.txt.*)" match)
+ (string-append "@FB_DOCDIR@" match))
+ (("(cp .*/doc/.*)@FB_CONFDIR@(.*)" _ head tail)
+ (string-append head "@FB_DOCDIR@" tail "\n")))
+ (substitute*
+ (list "builds/install/posix-common/changeServerMode.sh.in"
+ "builds/install/posix-common/install.sh.in")
+ ;; Skip phases that (could) cause problems in Guix.
+ (("check(InstallUser|IfServerRunning|Libraries)|addFirebirdUser")
+ ":")
+ ;; Skip phases that are merely pointless on Guix.
+ (("buildUninstallFile|installInitdScript|startFirebird") ":")
+ ;; Omit randomly generated password with bonus timestamp.
+ (("setDBAPassword") ":"))
+
+ ;; These promote proprietary workflows not relevant on Guix.
+ (for-each delete-file-recursively
+ (find-files "doc" "README\\.(build\\.msvc|NT|Win)"))
+ #t))
+ (add-after 'configure 'delete-init-scripts
+ (lambda _
+ (delete-file-recursively "gen/install/misc")
+ #t))
+ (add-before 'build 'set-build-environment-variables
+ (lambda _
+ ;; ‘isql’ needs to run & find libfbclient.so during the build.
+ ;; This doubles as a rudimentary test in lieu of a test suite.
+ (setenv "LD_LIBRARY_PATH"
+ (string-append (assoc-ref %build-inputs "icu4c") "/lib"))
+ #t))
+ (add-before 'install 'keep-embedded-debug-symbols
+ (lambda _
+ ;; Let the gnu-build-system separate & deal with them later.
+ ;; XXX Upstream would use ‘--strip-unneeded’, shaving a whole
+ ;; megabyte off Guix's 7.7M libEngine12.so, for example.
+ (substitute* "gen/Makefile.install"
+ (("readelf") "false"))
+ #t))
+ (add-after 'install 'prune-undesirable-files
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ (with-directory-excursion out
+ ;; Remove example binaries.
+ (for-each delete-file-recursively
+ (find-files "." "example"))
+ ;; Delete (now-)empty directories.
+ (for-each rmdir
+ (list "include/firebird/impl"
+ "lib/firebird/plugins/udr"))
+ #t)))))))
+ (inputs
+ `(("boost" ,boost)
+ ("editline" ,editline)
+ ("icu4c" ,icu4c-67)
+ ("libtommath" ,libtommath)
+ ("ncurses" ,ncurses)
+ ("zlib" ,zlib)))
+ (home-page "https://www.firebirdsql.org")
+ (synopsis "Relational database with many ANSI SQL standard features")
+ (description
+ "Firebird is an SQL @acronym{RDBMS, relational database management system}
+with rich support for ANSI SQL (e.g., @code{INSERT...RETURNING}) including
+@acronym{UDFs, user-defined functions} and PSQL stored procedures, cursors, and
+triggers. Transactions provide full ACID-compliant referential integrity.
+
+The database requires very little manual maintenance once set up, making it
+ideal for small business or embedded use.
+
+When installed as a traditional local or remote (network) database server,
+Firebird can grow to terabyte scale with proper tuning---although PostgreSQL
+may be a better choice for such very large environments.
+
+Firebird can also be embedded into stand-alone applications that don't want or
+need a full client & server. Used in this manner, it offers richer SQL support
+than SQLite as well as the option to seamlessly migrate to a client/server
+database later.")
+ (properties
+ `((lint-hidden-cve . ("CVE-2017-6369"))))
+ (license
+ ;; See doc/license/README.license.usage.txt for rationale & details.
+ (list license:bsd-3 ; src/common/sha2/
+ license:bsd-4 ; src/common/enc.cpp
+ license:gpl2+ ; builds/posix/make.defaults
+ (license:non-copyleft "file:///builds/install/misc/IPLicense.txt"
+ "InterBase Public License v1.0")
+ (license:non-copyleft "file:///builds/install/misc/IDPLicense.txt"
+ "Initial Developer's Public License v1.0")
+ license:lgpl2.1 ; exception for OSI-compatible licences
+ license:mpl1.1 ; examples/interfaces/0{6,8}*.cpp
+ license:public-domain)))) ; including files without explicit licence
+
(define-public leveldb
(package
(name "leveldb")
;; Some parts are licensed under the Apache License
license:asl2.0))))
+(define-public mycli
+ (package
+ (name "mycli")
+ (version "1.22.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "mycli" version))
+ (sha256
+ (base32 "1lq2x95553vdmhw13cxcgsd2g2i32izhsb7hxd4m1iwf9b3msbpv"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:tests? #f)) ; tests expect a running MySQL
+ (propagated-inputs
+ `(("python-cli-helpers" ,python-cli-helpers)
+ ("python-click" ,python-click)
+ ("python-configobj" ,python-configobj)
+ ("python-cryptography" ,python-cryptography)
+ ("python-prompt-toolkit" ,python-prompt-toolkit)
+ ("python-pygments" ,python-pygments)
+ ("python-pymysql" ,python-pymysql)
+ ("python-sqlparse" ,python-sqlparse)))
+ (home-page "http://mycli.net")
+ (synopsis
+ "Terminal Client for MySQL with AutoCompletion and Syntax Highlighting")
+ (description
+ "MyCLI is a command line interface for MySQL, MariaDB, and Percona with
+auto-completion and syntax highlighting.")
+ (license license:bsd-3)))
+
;; XXX When updating, check whether boost-for-mysql is still needed.
;; It might suffice to patch ‘cmake/boost.cmake’ as done in the past.
(define-public mysql
(define-public mariadb
(package
(name "mariadb")
- (version "10.1.45")
+ (version "10.5.8")
(source (origin
(method url-fetch)
(uri (string-append "https://downloads.mariadb.com/MariaDB"
version ".tar.gz"))
(sha256
(base32
- "1mfs0x4c0z7d306n128dxdawk3llk25vxif5zwl20fv1z5qhz3wx"))
- (patches (search-patches "mariadb-client-test-32bit.patch"))
+ "1s3vfm73911cddjhgpcbkya6nz7ag2zygg56qqzwscn5ybv28j7b"))
(modules '((guix build utils)))
(snippet
'(begin
(for-each (lambda (file)
(unless (string-suffix? "CMakeLists.txt" file)
(delete-file file)))
- (append (find-files "extra/yassl")
- (find-files "pcre") (find-files "zlib")))
+ (append (find-files "extra/wolfssl")
+ (find-files "zlib")))
#t))))
(build-system cmake-build-system)
(outputs '("out" "lib" "dev"))
"-DDEFAULT_COLLATION=utf8_general_ci"
"-DMYSQL_DATADIR=/var/lib/mysql"
"-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
+
+ ;; Do not install the benchmark suite.
+ "-DINSTALL_SQLBENCHDIR=false"
+
(string-append "-DCMAKE_INSTALL_PREFIX=" (assoc-ref %outputs "lib"))
(string-append "-DCMAKE_INSTALL_RPATH=" (assoc-ref %outputs "lib")
"/lib")
"-DINSTALL_SHAREDIR=share")
#:phases
(modify-phases %standard-phases
- ,@(if (string-prefix? "arm" (%current-system))
- ;; XXX: Because of the GCC 5 input, we need to hide GCC 7 from
- ;; CPLUS_INCLUDE_PATH so that its headers do not shadow GCC 5.
- '((add-after 'set-paths 'hide-default-gcc
- (lambda* (#:key inputs #:allow-other-keys)
- (let ((gcc (assoc-ref inputs "gcc")))
- (setenv "CPLUS_INCLUDE_PATH"
- (string-join
- (delete (string-append gcc "/include/c++")
- (string-split (getenv "CPLUS_INCLUDE_PATH")
- #\:))
- ":"))
- #t))))
- '())
- (add-after 'unpack 'fix-pcre-detection
+ (add-after 'unpack 'adjust-output-references
(lambda _
- ;; The bundled PCRE in MariaDB has a patch that was upstreamed
- ;; in version 8.34. Unfortunately the upstream patch behaves
- ;; slightly differently and the build system fails to detect it.
- ;; See <https://bugs.exim.org/show_bug.cgi?id=2173>.
- ;; XXX: Consider patching PCRE instead.
- (substitute* "cmake/pcre.cmake"
- ((" OR NOT PCRE_STACK_SIZE_OK") ""))
+ ;; The build system invariably prepends $CMAKE_INSTALL_PREFIX
+ ;; to other variables such as $INSTALL_INCLUDEDIR, which does
+ ;; not work when the latter uses an absolute file name.
+ (substitute* "libmariadb/mariadb_config/mariadb_config.c.in"
+ (("%s/@INSTALL_INCLUDEDIR@")
+ (string-append "@INSTALL_INCLUDEDIR@"))
+ ;; As of 10.5.8, the mariadb_config program tries to be
+ ;; clever and computes the installation directory relative
+ ;; to /proc/self/exe when running on Linux. Make it fall
+ ;; back to the old behaviour.
+ (("defined\\(__linux__\\)")
+ "0"))
+ (substitute* "libmariadb/mariadb_config/libmariadb.pc.in"
+ (("\\$\\{prefix\\}/@INSTALL_INCLUDEDIR@")
+ "@INSTALL_INCLUDEDIR@"))
+ (substitute* "support-files/mariadb.pc.in"
+ (("^(include|bin|script|doc|man)dir=\\$\\{prefix\\}/" _ dir)
+ (string-append dir "dir=")))
+ (substitute* "include/CMakeLists.txt"
+ (("\\\\\\$\\{CMAKE_INSTALL_PREFIX\\}/\\$\\{INSTALL_INCLUDEDIR\\}")
+ "${INSTALL_INCLUDEDIR}"))
+ (substitute* "cmake/mariadb_connector_c.cmake"
+ (("\\\\\\$\\{CMAKE_INSTALL_PREFIX\\}/\\$\\{INSTALL_BINDIR\\}")
+ "${INSTALL_BINDIR}"))
#t))
(add-after 'unpack 'adjust-tests
(lambda _
'(;; These fail because root@hostname == root@localhost in
;; the build environment, causing a user count mismatch.
;; See <https://jira.mariadb.org/browse/MDEV-7761>.
+ "funcs_1.is_columns_mysql"
"main.join_cache"
"main.explain_non_select"
"main.stat_tables"
"main.stat_tables_innodb"
+ "main.upgrade_MDEV-19650"
"roles.acl_statistics"
+ ;; FIXME: This test checks various table encodings and
+ ;; fails because Guix defaults to UTF8 instead of the
+ ;; upstream default latin1_swedish_ci. It's not easily
+ ;; substitutable because several encodings are tested.
+ "main.sp2"
+
+ ;; XXX: This test occasionally fails on i686-linux:
+ ;; <https://jira.mariadb.org/browse/MDEV-24458>
+ ,@(if (string-prefix? "i686" (%current-system))
+ '("main.myisampack")
+ '())
+
;; This file contains a time bomb which makes it fail after
;; 2030-12-31. See <https://bugs.gnu.org/34351> for details.
- "main.mysqldump"
-
- ;; FIXME: This test fails on i686:
- ;; -myisampack: Can't create/write to file (Errcode: 17 "File exists")
- ;; +myisampack: Can't create/write to file (Errcode: 17 "File exists)
- ;; When running "myisampack --join=foo/t3 foo/t1 foo/t2"
- ;; (all three tables must exist and be identical)
- ;; in a loop it produces the same error around 1/240 times.
- ;; montywi on #maria suggested removing the real_end check in
- ;; "strings/my_vsnprintf.c" on line 503, yet it still does not
- ;; reach the ending quote occasionally. Disable it for now.
- "main.myisampack"
- ;; FIXME: This test fails on armhf-linux:
- "mroonga/storage.index_read_multiple_double"))
+ "main.mysqldump"))
;; This file contains a list of known-flaky tests for this
;; release. Append our own items.
disabled-tests)
(close-port unstable-tests)
- ;; XXX: This test fails because it expects a latin1 charset and
+ ;; XXX: These fail because they expect a latin1 charset and
;; collation. See <https://jira.mariadb.org/browse/MDEV-21264>.
- (substitute* "mysql-test/r/gis_notembedded.result"
+ (substitute* '("mysql-test/main/gis_notembedded.result"
+ "mysql-test/main/system_mysql_db.result")
(("latin1_swedish_ci") "utf8_general_ci")
(("\tlatin1") "\tutf8"))
"--testcase-timeout=40"
"--suite-timeout=600"
"--parallel" (number->string (parallel-job-count))
+ ;; Skip the replication tests: they are very I/O
+ ;; intensive and frequently causes indeterministic
+ ;; failures even on powerful hardware.
+ "--skip-rpl"
"--skip-test-list=unstable-tests"))
(format #t "test suite not run~%"))
#t))
(dev (assoc-ref outputs "dev"))
(lib (assoc-ref outputs "lib"))
(openssl (assoc-ref inputs "openssl")))
- (substitute* (string-append out "/bin/mysql_install_db")
+ (substitute* (list (string-append out "/bin/mariadb-install-db")
+ (string-append out "/bin/mysql_install_db"))
(("basedir=\"\"")
- (string-append "basedir=\"" out "\"")))
- ;; Remove unneeded files for testing.
+ (string-append "basedir=\"" out "\""))
+ (("\\$basedir/share/mysql")
+ (string-append lib "/share/mysql")))
+
(with-directory-excursion lib
- (for-each delete-file-recursively
- '("data" "mysql-test" "sql-bench"))
- ;; And static libraries.
+ ;; Remove tests.
+ (delete-file-recursively "mysql-test")
+ ;; Remove static libraries.
(for-each delete-file (find-files "lib" "\\.a$")))
+
(with-directory-excursion out
(delete-file "share/man/man1/mysql-test-run.pl.1")
;; Delete huge and unnecessary executables.
- (for-each delete-file (find-files "bin" "(test|embedded)")))
+ (for-each delete-file (find-files "bin" "test$")))
(mkdir-p (string-append dev "/share"))
(mkdir-p (string-append dev "/bin"))
+ (rename-file (string-append lib "/bin/mariadbd")
+ (string-append out "/bin/mariadbd"))
(rename-file (string-append lib "/bin/mysqld")
(string-append out "/bin/mysqld"))
- (rename-file (string-append lib "/share/pkgconfig")
- (string-append dev "/share/pkgconfig"))
+ (mkdir-p (string-append dev "/lib"))
+ (rename-file (string-append lib "/lib/pkgconfig")
+ (string-append dev "/lib/pkgconfig"))
+ (rename-file (string-append lib "/bin/mariadb_config")
+ (string-append dev "/bin/mariadb_config"))
(rename-file (string-append out "/bin/mysql_config")
(string-append dev "/bin/mysql_config"))
-
- (substitute* (string-append out "/bin/mysql_install_db")
- (("\\$basedir/share/mysql")
- (string-append lib "/share/mysql")))
-
;; Embed an absolute reference to OpenSSL in mysql_config
;; and the pkg-config file to avoid propagation.
+ ;; XXX: how to do this for mariadb_config.c.in?
(substitute* (list (string-append dev "/bin/mysql_config")
- (string-append dev "/share/pkgconfig/mariadb.pc"))
+ (string-append dev "/lib/pkgconfig/mariadb.pc"))
(("-lssl -lcrypto" all)
(string-append "-L" openssl "/lib " all)))
#t))))))
(native-inputs
`(("bison" ,bison)
- ;; XXX: On armhf, use GCC 5 to work around <https://bugs.gnu.org/37605>.
- ,@(if (string-prefix? "armhf" (%current-system))
- `(("gcc@5", gcc-5))
- '())
("perl" ,perl)))
(inputs
`(("jemalloc" ,jemalloc)
("libaio" ,libaio)
("libxml2" ,libxml2)
("ncurses" ,ncurses)
- ("openssl" ,openssl-1.0)
+ ("openssl" ,openssl)
("pam" ,linux-pam)
- ("pcre" ,pcre)
+ ("pcre2" ,pcre2)
("xz" ,xz)
("zlib" ,zlib)))
;; The test suite is very resource intensive and can take more than three
(define-public mariadb-connector-c
(package
(name "mariadb-connector-c")
- (version "3.1.8")
- (source (origin
- (method url-fetch)
- (uri (string-append
- "https://downloads.mariadb.org/f/connector-c-"
- version "/mariadb-connector-c-"
- version "-src.tar.gz"))
- (sha256
- (base32
- "0yrzhsxmjiwkhchagx8dymzhvxl3k5h40wn9wpicqjvgjb9k8523"))))
+ (version "3.1.11")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://downloads.mariadb.org/f/connector-c-" version
+ "/mariadb-connector-c-" version "-src.tar.gz"
+ "/from/https%3A//mirrors.ukfast.co.uk/sites/mariadb/?serve"))
+ (sha256
+ (base32 "03svzahdf7czjlm695c11r4bfd04qdqgx8r1vkpr1zlkjhwnqvry"))))
(inputs
`(("openssl" ,openssl)))
(build-system cmake-build-system)
(license license:lgpl2.1+)))
;; Don't forget to update the other postgresql packages when upgrading this one.
-(define-public postgresql
+(define-public postgresql-13
(package
(name "postgresql")
- (version "10.13")
+ (version "13.1")
(source (origin
(method url-fetch)
(uri (string-append "https://ftp.postgresql.org/pub/source/v"
version "/postgresql-" version ".tar.bz2"))
(sha256
(base32
- "1qal0yp7a90yzya7hl56gsmw5fvacplrdhpn7h9gnbyr1i2iyw2d"))
+ "07z6zwr58dckaa97yl9ml240z83d1lhgaxw9aq49i8lsp21mqd0j"))
(patches (search-patches "postgresql-disable-resolve_symlinks.patch"))))
(build-system gnu-build-system)
(arguments
- `(#:configure-flags '("--with-uuid=e2fs" "--with-openssl")
+ `(#:configure-flags '("--with-uuid=e2fs" "--with-openssl"
+ ;; PostgreSQL installs its own Makefile (should it?).
+ ;; Prevent it from retaining needless references to
+ ;; the build tools in order to save size.
+ "MKDIR_P=mkdir -p" "INSTALL_BIN=install -c"
+ "LD=ld" "TAR=tar")
#:phases
(modify-phases %standard-phases
(add-before 'configure 'patch-/bin/sh
(define-public postgresql-11
(package
- (inherit postgresql)
+ (inherit postgresql-13)
(name "postgresql")
(version "11.6")
(source (origin
- (method url-fetch)
+ (inherit (package-source postgresql-13))
(uri (string-append "https://ftp.postgresql.org/pub/source/v"
version "/postgresql-" version ".tar.bz2"))
(sha256
(base32
"0w1iq488kpzfgfnlw4k32lz5by695mpnkq461jrgsr99z5zlz4j9"))))))
+(define-public postgresql-10
+ (package
+ (inherit postgresql-11)
+ (version "10.13")
+ (source (origin
+ (inherit (package-source postgresql-11))
+ (uri (string-append "https://ftp.postgresql.org/pub/source/v"
+ version "/postgresql-" version ".tar.bz2"))
+ (sha256
+ (base32
+ "1qal0yp7a90yzya7hl56gsmw5fvacplrdhpn7h9gnbyr1i2iyw2d"))))))
+
(define-public postgresql-9.6
(package
- (inherit postgresql)
- (name "postgresql")
+ (inherit postgresql-10)
(version "9.6.16")
(source (origin
- (method url-fetch)
+ (inherit (package-source postgresql-10))
(uri (string-append "https://ftp.postgresql.org/pub/source/v"
version "/postgresql-" version ".tar.bz2"))
(sha256
(base32
"1rr2dgv4ams8r2lp13w85c77rkmzpb88fjlc28mvlw6zq2fblv2w"))))))
+(define-public postgresql postgresql-13)
+
(define-public python-pymysql
(package
(name "python-pymysql")
(native-inputs `(("bc" ,bc)
("bash:include" ,bash "include")
- ("check" ,check)
- ("libuuid" ,util-linux)
+ ("check" ,check-0.14)
("pkg-config" ,pkg-config)))
;; TODO: Add more optional inputs.
(inputs `(("curl" ,curl)
- ("libgcrypt" ,libgcrypt)))
+ ("libgcrypt" ,libgcrypt)
+ ("libuuid" ,util-linux "lib")))
(synopsis "Manipulate plain text files as databases")
(description
"GNU Recutils is a set of tools and libraries for creating and
(define-public rocksdb
(package
(name "rocksdb")
- (version "6.8.1")
+ (version "6.11.4")
(source (origin
(method git-fetch)
(uri (git-reference
(file-name (git-file-name name version))
(sha256
(base32
- "0i6qglyrcqwxnrvq67zm7ln79a4sj8mzgij9h0nz5zkxax8v1zg1"))
+ "0n19p9cd13jg0lnibrzwkxs4xlrhyj3knypkd2ic41arbds0bdnl"))
(modules '((guix build utils)))
(snippet
'(begin
`(#:make-flags (list "CC=gcc" "V=1"
;; Ceph requires that RTTI is enabled.
"USE_RTTI=1"
+ "date=1970-01-01" ; build reproducibly
(string-append "INSTALL_PATH="
(assoc-ref %outputs "out"))
(define-public sqitch
(package
(name "sqitch")
- (version "1.0.0")
+ (version "1.1.0")
(source
(origin
(method url-fetch)
"mirror://cpan/authors/id/D/DW/DWHEELER/App-Sqitch-v"
version ".tar.gz"))
(sha256
- (base32 "0p4wraqiscvwmmsvfqfy65blgsilwpvd9zj4d2zvm2xdx70ncr7l"))))
+ (base32 "1ayiwg9kh3w0nbacbcln7h944z94vq5vnnd5diz86033bpbnq57f"))))
(build-system perl-build-system)
(arguments
'(#:phases
("perl-test-file" ,perl-test-file)
("perl-test-file-contents" ,perl-test-file-contents)
("perl-test-mockmodule" ,perl-test-mockmodule)
+ ("perl-test-mockobject" ,perl-test-mockobject)
("perl-test-nowarnings" ,perl-test-nowarnings)
("perl-test-warn" ,perl-test-warn)))
(inputs
("perl-config-gitlike" ,perl-config-gitlike)
("perl-datetime" ,perl-datetime)
("perl-datetime-timezone" ,perl-datetime-timezone)
+ ("perl-dbd-mysql" ,perl-dbd-mysql)
("perl-dbd-pg" ,perl-dbd-pg)
+ ("perl-dbd-sqlite" ,perl-dbd-sqlite)
("perl-dbi" ,perl-dbi)
("perl-devel-stacktrace" ,perl-devel-stacktrace)
("perl-encode-locale" ,perl-encode-locale)
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/coffeeandscripts/sqlcrush.git")
+ (url "https://github.com/coffeeandscripts/sqlcrush")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(define-public perl-dbix-class
(package
(name "perl-dbix-class")
- (version "0.082841")
+ (version "0.082842")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://cpan/authors/id/R/RI/RIBASUSHI/"
"DBIx-Class-" version ".tar.gz"))
(sha256
- (base32
- "1gf3hgv8f9rnr8bl4ljgsqk4aliphmvljhsk4282kvdc4mcgh1fp"))))
+ (base32 "1rh7idjjbibc1zmiaaarask434lh0lx7f2xyfwmy37k9fa0xcpmh"))))
(build-system perl-build-system)
(native-inputs
`(("perl-dbd-sqlite" ,perl-dbd-sqlite)
("perl-path-class" ,perl-path-class)
("perl-scalar-list-utils" ,perl-scalar-list-utils)
("perl-scope-guard" ,perl-scope-guard)
- ("perl-sql-abstract" ,perl-sql-abstract)
+ ("perl-sql-abstract-classic" ,perl-sql-abstract-classic)
("perl-sub-name" ,perl-sub-name)
("perl-text-balanced" ,perl-text-balanced)
("perl-try-tiny" ,perl-try-tiny)))
(define-public perl-dbd-sqlite
(package
(name "perl-dbd-sqlite")
- (version "1.64")
+ (version "1.66")
(source (origin
(method url-fetch)
(uri (string-append
version ".tar.gz"))
(sha256
(base32
- "00gz5aw3xrr92lf9nfk0dhmy7a8jzmxhznddd9b0a8w4a1xqzbpl"))))
+ "1zljln5nh61gj3k22a1fv2vhx5l83waizmarwkh77hk6kzzmvrw9"))))
(build-system perl-build-system)
(inputs `(("sqlite" ,sqlite)))
(propagated-inputs `(("perl-dbi" ,perl-dbi)))
(synopsis "Parse and utilize MySQL's /etc/my.cnf and ~/.my.cnf files")
(description
"@code{MySQL::Config} emulates the @code{load_defaults} function from
-libmysqlclient. It will fill an aray with long options, ready to be parsed by
+libmysqlclient. It will fill an array with long options, ready to be parsed by
@code{Getopt::Long}.")
(license license:perl-license)))
(define-public perl-sql-abstract
(package
(name "perl-sql-abstract")
- (version "1.86")
+ (version "1.87")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
"SQL-Abstract-" version ".tar.gz"))
(sha256
- (base32 "1pwcm8hwxcgidyyrak37lx69d85q728jxsb0b14jz93gbvdgg9z7"))))
+ (base32 "0jhw91b23wc9bkfwcgvka4x5ddxk58m9bcp5ay7a3vx77nla09p9"))))
(build-system perl-build-system)
(native-inputs
`(("perl-module-install" ,perl-module-install)
time your data changes.")
(license license:perl-license)))
+(define-public perl-sql-abstract-classic
+ (package
+ (name "perl-sql-abstract-classic")
+ (version "1.91")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "mirror://cpan/authors/id/R/RI/RIBASUSHI/"
+ "SQL-Abstract-Classic-" version ".tar.gz"))
+ (sha256
+ (base32 "0a7g13hs3kdxrjn43sfli09mgsi9d6w0dfw6hlk268av17yisgaf"))))
+ (build-system perl-build-system)
+ (native-inputs
+ `(("perl-test-deep" ,perl-test-deep)
+ ("perl-test-exception" ,perl-test-exception)
+ ("perl-test-warn" ,perl-test-warn)))
+ (propagated-inputs
+ `(("perl-mro-compat" ,perl-mro-compat)
+ ("perl-sql-abstract" ,perl-sql-abstract)))
+ (home-page "https://metacpan.org/release/SQL-Abstract-Classic")
+ (synopsis "Generate SQL from Perl data structures")
+ (description
+ "This module is nearly identical to @code{SQL::Abstract} 1.81, and exists
+to preserve the ability of users to opt into the new way of doing things in
+later versions according to their own schedules.
+
+It is an abstract SQL generation module based on the concepts used by
+@code{DBIx::Abstract}, with several important differences, especially when it
+comes to @code{WHERE} clauses. These concepts were modified to make the SQL
+easier to generate from Perl data structures.
+
+The underlying idea is for this module to do what you mean, based on the data
+structures you provide it. You shouldn't have to modify your code every time
+your data changes, as this module figures it out.")
+ (license license:perl-license)))
+
(define-public perl-sql-splitstatement
(package
(name "perl-sql-splitstatement")
(define-public unixodbc
(package
(name "unixodbc")
- (version "2.3.7")
+ (version "2.3.9")
(source (origin
(method url-fetch)
(uri
"ftp://ftp.unixodbc.org/pub/unixODBC/unixODBC-"
version ".tar.gz"))
(sha256
- (base32 "0xry3sg497wly8f7715a7gwkn2k36bcap0mvzjw74jj53yx6kwa5"))))
+ (base32 "01xj65d02i3yjy7p9z08y9jakcs5szmz4rask868n7387nn3x0sj"))))
(build-system gnu-build-system)
(synopsis "Data source abstraction library")
(description "Unixodbc is a library providing an API with which to access
(define-public kyotocabinet
(package
(name "kyotocabinet")
- (version "1.2.77")
+ (version "1.2.78")
(source (origin
(method url-fetch)
- (uri (string-append "http://fallabs.com/kyotocabinet/pkg/"
- name "-" version ".tar.gz"))
+ (uri (string-append "https://fallabs.com/kyotocabinet/pkg/"
+ "kyotocabinet-" version ".tar.gz"))
(sha256
(base32
- "1rlx4307adbzd842b4npq6cwlw8h010ingxaz3qz1ijc70lr72an"))))
+ "1bxkf9kmcavq9rqridb8mvmrk3hj4447ffi24m2admsbm61n6k29"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
(string-append "LDFLAGS=-Wl,-rpath="
(assoc-ref %outputs "out") "/lib"))))
(inputs `(("zlib" ,zlib)))
- (home-page "http://fallabs.com/kyotocabinet/")
+ (home-page "https://fallabs.com/kyotocabinet/")
(synopsis
"Kyoto Cabinet is a modern implementation of the DBM database")
(description
(define-public perl-db-file
(package
(name "perl-db-file")
- (version "1.853")
+ (version "1.855")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://cpan/authors/id/P/PM/PMQS/DB_File-"
version ".tar.gz"))
(sha256
- (base32 "1y967si45vj0skip1hnhicbv9da29fv6qcfwnsbnvj06n36mkj6h"))))
+ (base32 "0q599h7g4jkzks5dxf1zifx9k7l9vif26r2dlgkzxkg6bfif5zyr"))))
(build-system perl-build-system)
(inputs `(("bdb" ,bdb)))
(native-inputs `(("perl-test-pod" ,perl-test-pod)))
(("/usr/local/BerkeleyDB") (assoc-ref inputs "bdb")))
#t)))))
(home-page "https://metacpan.org/release/DB_File")
- (synopsis
- "Perl5 access to Berkeley DB version 1.x")
+ (synopsis "Perl5 access to Berkeley DB version 1.x")
(description
"The DB::File module provides Perl bindings to the Berkeley DB version 1.x.")
(license license:perl-license)))
(define-public lmdb
(package
(name "lmdb")
- (version "0.9.25")
+ (version "0.9.27")
(source
(origin
(method git-fetch)
(commit (string-append "LMDB_" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0i60zlca8r6fib23gdgl4c80gxpx24772ggpvz94yr7zaai4k11w"))))
+ (base32 "09xqqm8yjsf1gv4gd4llal48sms76hfhxadx6rik1j2g5v3d3f1k"))))
(build-system gnu-build-system)
(arguments
`(#:test-target "test"
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/drycpp/lmdbxx.git")
+ (url "https://github.com/drycpp/lmdbxx")
(commit version)))
(file-name (git-file-name name version))
(sha256
(define-public python-peewee
(package
(name "python-peewee")
- (version "3.9.6")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "peewee" version))
- (sha256
- (base32
- "1j4sh946k0736m7pd54z0y6i2hjhgg3kdllx1pwq8xkzzcgrx1xw"))))
+ (version "3.14.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "peewee" version))
+ (sha256
+ (base32 "1yl49gxrg0c2x3n3r60z3lixw9am8b61s0477l9vjabhhx1yziar"))))
(build-system python-build-system)
(arguments
- `(#:tests? #f)) ; Fails to import test data
+ `(#:tests? #f)) ; fails to import test data
+ (inputs
+ `(("sqlite" ,sqlite)))
(native-inputs
`(("python-cython" ,python-cython)))
(home-page "https://github.com/coleifer/peewee/")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/brianb/mdbtools.git")
+ (url "https://github.com/brianb/mdbtools")
(commit version)))
(file-name (git-file-name name version))
(sha256
(define-public python-lmdb
(package
(name "python-lmdb")
- (version "0.98")
+ (version "1.0.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "lmdb" version))
(sha256
(base32
- "027pgbdhhdcbwj53vrzr6a60gjhmz4s75gl3180fd4q8pwlbq986"))
+ "1di1gj2agbxwqqwrpk4w58dpfah0kl10ha20s63dlqdd1bgzydj1"))
(modules '((guix build utils)))
(snippet
;; Delete bundled lmdb source files.
(add-before 'build 'use-system-lmdb
(lambda* (#:key inputs #:allow-other-keys)
(let ((lmdb (assoc-ref inputs "lmdb")))
+ (setenv "LMDB_PURE" "set") ; don't apply env-copy-txn.patch
(setenv "LMDB_FORCE_SYSTEM" "set")
(setenv "LMDB_INCLUDEDIR" (string-append lmdb "/include"))
(setenv "LMDB_LIBDIR" (string-append lmdb "/lib"))
;; TODO: Removing the libsrc/zlib source directory breaks the build.
;; This indicates that the internal zlib code may still be used.
#:configure-flags '("--without-internal-zlib"
- "--with-readline")))
+ "--with-readline"
+ "--enable-static=no")
+ #:phases
+ (modify-phases %standard-phases
+ ;; Even with "--enable-static=no", "libvirtuoso-t.a" is left in
+ ;; the build output. The following phase removes it.
+ (add-after 'install 'remove-static-libs
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((lib (string-append (assoc-ref outputs "out") "/lib")))
+ (for-each (lambda (file)
+ (delete-file (string-append lib "/" file)))
+ '("libvirtuoso-t.a"
+ "libvirtuoso-t.la"))))))))
(inputs
`(("openssl" ,openssl-1.0)
("net-tools" ,net-tools)
(define-public python-sqlalchemy
(package
(name "python-sqlalchemy")
- (version "1.3.15")
+ (version "1.3.20")
(source
(origin
(method url-fetch)
(uri (pypi-uri "SQLAlchemy" version))
(sha256
- (base32 "0iglkvymfp35zm5pxy5kzqvcv96kkas0chqdx7xpla86sspa9k64"))))
+ (base32 "18b9am7bsqc4nj3d2h5r93i002apczxfvpfpcqbd6f0385zmrwnj"))))
(build-system python-build-system)
(native-inputs
`(("python-cython" ,python-cython) ; for C extensions
(define-public python2-sqlalchemy-utils
(package-with-python2 python-sqlalchemy-utils))
+(define-public python-alchemy-mock
+ (package
+ (name "python-alchemy-mock")
+ (version "0.4.3")
+ (home-page "https://github.com/miki725/alchemy-mock")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "alchemy-mock" version))
+ (sha256
+ (base32
+ "0ylxygl3bcdapzz529n8wgk7vx9gjwb3ism564ypkpd7dbsw653r"))))
+ (build-system python-build-system)
+ (arguments
+ '(#:phases (modify-phases %standard-phases
+ (replace 'check
+ (lambda _
+ ;; Create pytest.ini that adds doctest options to
+ ;; prevent test failure. Taken from tox.ini.
+ (call-with-output-file "pytest.ini"
+ (lambda (port)
+ (format port "[pytest]
+doctest_optionflags=IGNORE_EXCEPTION_DETAIL
+")))
+ (invoke "pytest" "-vv" "--doctest-modules"
+ "alchemy_mock/"))))))
+ (native-inputs
+ `(("python-mock" ,python-mock)
+ ("python-pytest" ,python-pytest)))
+ (propagated-inputs
+ `(("python-six" ,python-six)
+ ("python-sqlalchemy" ,python-sqlalchemy)))
+ (synopsis "Mock helpers for SQLAlchemy")
+ (description
+ "This package provides mock helpers for SQLAlchemy that makes it easy
+to mock an SQLAlchemy session while preserving the ability to do asserts.
+
+Normally Normally SQLAlchemy's expressions cannot be easily compared as
+comparison on binary expression produces yet another binary expression, but
+this library provides functions to facilitate such comparisons.")
+ (license license:expat)))
+
(define-public python-alembic
(package
(name "python-alembic")
- (version "1.4.1")
+ (version "1.4.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "alembic" version))
- (patches (search-patches "python-alembic-exceptions-cause.patch"))
(sha256
- (base32
- "0a4hzn76csgbf1px4f5vfm256byvjrqkgi9869nkcjrwjn35c6kr"))))
+ (base32 "0if2dgb088clk738p26bwk50735h6jpd2kacdgc5capv2hiz6d2k"))))
(build-system python-build-system)
(arguments
'(#:phases (modify-phases %standard-phases
(define-public python-psycopg2
(package
(name "python-psycopg2")
- (version "2.8.4")
+ (version "2.8.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "psycopg2" version))
(sha256
- (base32 "1djvh98pi4hjd8rxbq8qzc63bg8v78k33yg6pl99wak61b6fb67q"))))
+ (base32 "0hzmk6b1hb5riqkljr5xics6p4zbvmis6knbczb7zhq7273zc8zv"))))
(build-system python-build-system)
(arguments
;; Tests would require a postgresql database "psycopg2_test"
(define-public python2-sadisplay
(package-with-python2 python-sadisplay))
+(define-public yoyo-migrations
+ (package
+ (name "yoyo-migrations")
+ (version "7.2.0")
+ (source
+ (origin
+ ;; We use the upstream repository, as the tests are not included in the
+ ;; PyPI releases.
+ (method hg-fetch)
+ (uri (hg-reference
+ (url "https://hg.sr.ht/~olly/yoyo")
+ (changeset (string-append "v" version "-release"))))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32 "0q2z9bgdj3wyix7yvqsayfs21grp5av8ilh411lgmjhigszkvhcq"))))
+ (build-system python-build-system)
+ (arguments
+ ;; XXX: Tests require a connection to some pgsql database and psycopg
+ ;; fails to connect to it.
+ '(#:tests? #f))
+ (propagated-inputs
+ `(("python-sqlparse" ,python-sqlparse)
+ ("python-tabulate" ,python-tabulate)))
+ (home-page "https://ollycope.com/software/yoyo/latest/")
+ (synopsis "Database migrations with SQL")
+ (description
+ "Yoyo is a database schema migration tool. Migrations are written as SQL
+files or Python scripts that define a list of migration steps.")
+ (license license:asl2.0)))
+
(define-public python-mysqlclient
(package
(name "python-mysqlclient")
- (version "1.3.13")
+ (version "2.0.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "mysqlclient" version))
(sha256
(base32
- "0kv4a1icwdav8jpl7qvnr931lw5h3v22ids6lwq6qpi1hjzf33pz"))))
+ "1rf5l8hazs3v18hmcrm90z3hi9wxv553ipwd5l6kj8j7l6p7abzv"))))
(build-system python-build-system)
- (native-inputs
- `(("nose" ,python-nose)
- ("mock" ,python-mock)
- ("py.test" ,python-pytest)))
+ (arguments '(#:tests? #f)) ;XXX: requires a live database
(inputs
- `(("mysql" ,mariadb "lib")
- ("mysql-dev" ,mariadb "dev")
- ("libz" ,zlib)
- ("openssl" ,openssl)))
+ `(("mysql-dev" ,mariadb "dev")))
(home-page "https://github.com/PyMySQL/mysqlclient-python")
(synopsis "MySQLdb is an interface to the popular MySQL database server for Python")
(description "MySQLdb is an interface to the popular MySQL database server
@end enumerate")
(license license:gpl2)))
-(define-public python2-mysqlclient
- (package-with-python2 python-mysqlclient))
-
(define-public python-hiredis
(package
(name "python-hiredis")
(define-public python-redis
(package
(name "python-redis")
- (version "3.3.8")
+ (version "3.5.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "redis" version))
(sha256
- (base32 "0fyxzqax7lcwzwhvnz0i0q6v62hxyv1mv52ywx3bpff9a2vjz8lq"))))
+ (base32 "18h5b87g15x3j6pb1h2q27ri37p2qpvc9n2wgn5yl3b6m3y0qzhf"))))
(build-system python-build-system)
;; Tests require a running Redis server.
(arguments '(#:tests? #f))
(define-public python-rq
(package
(name "python-rq")
- (version "0.13.0")
+ (version "1.5.2")
(source
(origin
- (method url-fetch)
- (uri (pypi-uri "rq" version))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/rq/rq")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
- (base32 "0xvapd2bxnyq480i48bdkddzlqmv2axbsq85rlfy8k3al8zxxxrf"))))
+ (base32 "0ikqmpq0g1qiqwd7ar1286l4hqjb6aj2wr844gihhb8ijzwhp8va"))))
(build-system python-build-system)
+ (arguments
+ '(#:phases (modify-phases %standard-phases
+ (add-before 'check 'start-redis
+ (lambda _
+ (invoke "redis-server" "--daemonize" "yes")))
+ (replace 'check
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ ;; Drop test that needs the SDK for Sentry.io.
+ (delete-file "tests/test_sentry.py")
+ ;; Ensure 'rq' and 'rqworker' ends up on PATH.
+ (setenv "PATH" (string-append out "/bin:"
+ (getenv "PATH")))
+ (invoke "pytest" "-vv")))))))
+ (native-inputs
+ `(("python-mock" ,python-mock)
+ ("python-pytest" ,python-pytest)
+ ("redis" ,redis)))
(propagated-inputs
`(("python-click" ,python-click)
("python-redis" ,python-redis)))
(define-public python2-rq
(package-with-python2 python-rq))
+(define-public python-rq-scheduler
+ (package
+ (name "python-rq-scheduler")
+ (version "0.10.0")
+ (home-page "https://github.com/rq/rq-scheduler")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url home-page)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0xg6yazqs5kbr2ayvhvljs1h5vgx5k5dds613fmhswln7gglf9hk"))))
+ (build-system python-build-system)
+ (arguments
+ '(#:phases (modify-phases %standard-phases
+ (add-before 'check 'start-redis
+ (lambda _
+ (invoke "redis-server" "--daemonize" "yes")))
+ (replace 'check
+ (lambda _
+ (substitute* "run_tests.py"
+ (("/usr/bin/env")
+ (which "env")))
+ (invoke "./run_tests.py"))))))
+ (native-inputs
+ `(("redis" ,redis)
+ ("which" ,which)))
+ (propagated-inputs
+ `(("python-croniter" ,python-croniter)
+ ("python-rq" ,python-rq)))
+ (synopsis "Job scheduling capabilities for RQ (Redis Queue)")
+ (description
+ "This package provides job scheduling capabilities to @code{python-rq}
+(Redis Queue).")
+ (license license:expat)))
+
(define-public python-trollius-redis
(package
(name "python-trollius-redis")
(define-public python-sqlparse
(package
(name "python-sqlparse")
- (version "0.2.4")
+ (version "0.3.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "sqlparse" version))
(sha256
(base32
- "1v3xh0bkfhb262dbndgzhivpnhdwavdzz8jjhx9vx0xbrx2880nf"))))
+ "0j652a6z7bdf6c77aczfn8m8b2nsr1bcqq48wzghf8vi6wvj0qp1"))))
(build-system python-build-system)
(arguments
`(#:phases
(define-public python-pypika
(package
(name "python-pypika")
- (version "0.37.2")
+ (version "0.44.0")
(source
(origin (method git-fetch)
(uri (git-reference
- (url "https://github.com/kayak/pypika.git")
+ (url "https://github.com/kayak/pypika")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
- "089z1c778q1fwhzsc88ws8j5gm2hgxknibabn4wpax8rz2bfs3ck"))))
+ "0mpddrw9z1pzcc40j3pzhd583hlgjx96aa8ak6m9zzhpm4bv3ard"))))
(build-system python-build-system)
(native-inputs
`(("python-parameterized" ,python-parameterized)))
@end table")
(license license:asl2.0)))
+;; There are many wrappers for this in other languages. When touching, please
+;; be sure to ensure all dependencies continue to build.
(define-public apache-arrow
(package
(name "apache-arrow")
- (version "0.10.0")
+ (version "0.17.1")
(source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/apache/arrow")
- (commit (string-append "apache-arrow-" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "04xkp922b8qrrnpvv9ixxnvk7151n1plzx6aqdff6frn9651zvxs"))))
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/apache/arrow")
+ (commit (string-append "apache-arrow-" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "02r6yx3yhywzikd3b0vfkjgddhfiriyx2vpm3jf5880wq59x798a"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f
(setenv "BOOST_ROOT" (assoc-ref %build-inputs "boost"))
(setenv "BROTLI_HOME" (assoc-ref %build-inputs "brotli"))
(setenv "FLATBUFFERS_HOME" (assoc-ref %build-inputs "flatbuffers"))
- (setenv "JEMALLOC_HOME" (assoc-ref %build-inputs "jemalloc"))
(setenv "RAPIDJSON_HOME" (assoc-ref %build-inputs "rapidjson"))
#t)))
#:build-type "Release"
#:configure-flags
(list "-DARROW_PYTHON=ON"
-
- ;; Install to PREFIX/lib (the default is
- ;; PREFIX/lib64).
- (string-append "-DCMAKE_INSTALL_LIBDIR="
- (assoc-ref %outputs "out")
+ "-DARROW_GLOG=ON"
+ ;; Parquet options
+ "-DARROW_PARQUET=ON"
+ "-DPARQUET_BUILD_EXECUTABLES=ON"
+ ;; The maintainers disallow using system versions of
+ ;; jemalloc:
+ ;; https://issues.apache.org/jira/browse/ARROW-3507. This
+ ;; is unfortunate because jemalloc increases performance:
+ ;; https://arrow.apache.org/blog/2018/07/20/jemalloc/.
+ "-DARROW_JEMALLOC=OFF"
+
+ ;; The CMake option ARROW_DEPENDENCY_SOURCE is a global
+ ;; option that instructs the build system how to resolve
+ ;; each dependency. SYSTEM = Finding the dependency in
+ ;; system paths using CMake's built-in find_package
+ ;; function, or using pkg-config for packages that do not
+ ;; have this feature
+ "-DARROW_DEPENDENCY_SOURCE=SYSTEM"
+
+ ;; Split output into its component packages.
+ (string-append "-DCMAKE_INSTALL_PREFIX="
+ (assoc-ref %outputs "lib"))
+ (string-append "-DCMAKE_INSTALL_RPATH="
+ (assoc-ref %outputs "lib")
"/lib")
-
- ;; XXX These Guix package offer static
- ;; libraries that are not position independent,
- ;; and ld fails to link them into the arrow .so
- "-DARROW_WITH_SNAPPY=OFF"
- "-DARROW_WITH_ZLIB=OFF"
- "-DARROW_WITH_ZSTD=OFF"
- "-DARROW_WITH_LZ4=OFF"
+ (string-append "-DCMAKE_INSTALL_BINDIR="
+ (assoc-ref %outputs "out")
+ "/bin")
+ (string-append "-DCMAKE_INSTALL_INCLUDEDIR="
+ (assoc-ref %outputs "include")
+ "/share/include")
+
+
+ "-DARROW_WITH_SNAPPY=ON"
+ "-DARROW_WITH_ZLIB=ON"
+ "-DARROW_WITH_ZSTD=ON"
+ "-DARROW_WITH_LZ4=ON"
+ "-DARROW_COMPUTE=ON"
+ "-DARROW_CSV=ON"
+ "-DARROW_DATASET=ON"
+ "-DARROW_FILESYSTEM=ON"
+ "-DARROW_HDFS=ON"
+ "-DARROW_JSON=ON"
+ ;; Arrow Python C++ integration library (required for
+ ;; building pyarrow). This library must be built against
+ ;; the same Python version for which you are building
+ ;; pyarrow. NumPy must also be installed. Enabling this
+ ;; option also enables ARROW_COMPUTE, ARROW_CSV,
+ ;; ARROW_DATASET, ARROW_FILESYSTEM, ARROW_HDFS, and
+ ;; ARROW_JSON.
+ "-DARROW_PYTHON=ON"
;; Building the tests forces on all the
;; optional features and the use of static
;; libraries.
"-DARROW_BUILD_TESTS=OFF"
+ "-DBENCHMARK_ENABLE_GTEST_TESTS=OFF"
+ ;;"-DBENCHMARK_ENABLE_TESTING=OFF"
"-DARROW_BUILD_STATIC=OFF")))
(inputs
`(("boost" ,boost)
- ("rapidjson" ,rapidjson)
("brotli" ,google-brotli)
- ("flatbuffers" ,flatbuffers)
- ("jemalloc" ,jemalloc)
+ ("double-conversion" ,double-conversion)
+ ("snappy" ,snappy)
+ ("gflags" ,gflags)
+ ("glog" ,glog)
+ ("apache-thrift" ,apache-thrift "lib")
+ ("protobuf" ,protobuf)
+ ("rapidjson" ,rapidjson)
+ ("zlib" ,zlib)
+ ("bzip2" ,bzip2)
+ ("lz4" ,lz4)
+ ("zstd" ,zstd "lib")
+ ("re2" ,re2)
+ ("grpc" ,grpc)
("python-3" ,python)
("python-numpy" ,python-numpy)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (outputs '("out" "lib" "include"))
(home-page "https://arrow.apache.org/")
(synopsis "Columnar in-memory analytics")
(description "Apache Arrow is a columnar in-memory analytics layer
-designed to accelerate big data. It houses a set of canonical in-memory
+designed to accelerate big data. It houses a set of canonical in-memory
representations of flat and hierarchical data along with multiple
-language-bindings for structure manipulation. It also provides IPC and common
+language-bindings for structure manipulation. It also provides IPC and common
algorithm implementations.")
(license license:asl2.0)))
(define-public python-pyarrow
(package
+ (inherit apache-arrow)
(name "python-pyarrow")
- (version "0.10.0")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/apache/arrow")
- (commit (string-append "apache-arrow-" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "04xkp922b8qrrnpvv9ixxnvk7151n1plzx6aqdff6frn9651zvxs"))))
(build-system python-build-system)
(arguments
- '(#:tests? #f ; XXX There are no tests in the "python" directory
+ '(#:tests? #f ; XXX There are no tests in the "python" directory
#:phases
(modify-phases %standard-phases
(delete 'build) ; XXX the build is performed again during the install phase
(add-after 'unpack 'enter-source-directory
(lambda _ (chdir "python") #t))
- (add-after 'unpack 'set-env
+ (add-after 'unpack 'make-git-checkout-writable
(lambda _
- (setenv "ARROW_HOME" (assoc-ref %build-inputs "apache-arrow"))
+ (for-each make-file-writable (find-files "."))
#t)))))
(propagated-inputs
- `(("apache-arrow" ,apache-arrow)
+ `(("apache-arrow" ,apache-arrow "lib")
("python-numpy" ,python-numpy)
("python-pandas" ,python-pandas)
("python-six" ,python-six)))
(native-inputs
`(("cmake" ,cmake-minimal)
+ ("pkg-config" ,pkg-config)
("python-cython" ,python-cython)
("python-pytest" ,python-pytest)
("python-pytest-runner" ,python-pytest-runner)
("python-setuptools-scm" ,python-setuptools-scm)))
+ (outputs '("out"))
(home-page "https://arrow.apache.org/docs/python/")
(synopsis "Python bindings for Apache Arrow")
- (description "This library provides a Pythonic API wrapper for the reference
-Arrow C++ implementation, along with tools for interoperability with pandas,
-NumPy, and other traditional Python scientific computing packages.")
+ (description
+ "This library provides a Pythonic API wrapper for the reference Arrow C++
+implementation, along with tools for interoperability with pandas, NumPy, and
+other traditional Python scientific computing packages.")
(license license:asl2.0)))
(define-public python2-pyarrow
(define-public soci
(package
(name "soci")
- (version "4.0.0")
+ (version "4.0.1")
(source (origin
(method git-fetch)
(uri (git-reference
(file-name (git-file-name name version))
(sha256
(base32
- "06faswdxd2frqr9xnx6bxc7zwarlzsbdi3bqpz7kwdxsjvq41rnb"))))
+ "14x2gjblkgpflv75wl144cyjp1sis5rbxnr9r2gj3yw16v2av0bp"))))
(build-system cmake-build-system)
(inputs
- `(("postgresql" ,postgresql)
+ `(("firebird" ,firebird)
+ ("postgresql" ,postgresql)
("sqlite" ,sqlite)
("odbc" ,unixodbc)
("boost" ,boost)
- ("mariadb:dev" ,mariadb "dev")
- ("mariadb:lib" ,mariadb "lib")))
+ ("mariadb:dev" ,mariadb "dev")))
(arguments
- `(#:tests? #f ; Tests may require running database management systems.
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'fix-lib-path
- (lambda _
- (substitute* "CMakeLists.txt"
- (("set\\(SOCI_LIBDIR \"lib64\"\\)") ""))
- #t)))))
+ `(#:configure-flags
+ ;; C++11 (-DSOCI_CXX11) is OFF by default. hyperledger-iroha needs it.
+ (list "-DCMAKE_CXX_STANDARD=17"
+ "-DSOCI_LIBDIR=lib")
+ #:tests? #f)) ; may require running database management systems
(synopsis "C++ Database Access Library")
(description
"SOCI is an abstraction layer for several database backends, including
HCoop / jackhill / guix / guix.git / blobdiff