;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2016, 2017 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2016, 2017, 2018 Roel Janssen <roel@gnu.org>
-;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Raoul Bonnal <ilpuccio.febo@gmail.com>
;;; Copyright © 2018 Vijayalakshmi Vedantham <vijimay12@gmail.com>
;;; Copyright © 2018 Sahithi Yarlagadda <sahi@swecha.net>
;;; Copyright © 2018, 2019 Brett Gilio <brettg@gnu.org>
;;; Copyright © 2019 Nicolò Balzarotti <anothersms@gmail.com>
;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
+;;; Copyright © 2020 Todor Kondić <tk.code@protonmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
#:use-module (guix utils)
#:use-module (guix build-system r)
#:use-module (gnu packages algebra)
+ #:use-module (gnu packages autotools)
#:use-module (gnu packages base)
#:use-module (gnu packages bioinformatics)
#:use-module (gnu packages c)
(define-public r-shiny
(package
(name "r-shiny")
- (version "1.4.0")
+ (version "1.4.0.2")
(source
(origin
(method git-fetch)
(file-name (git-file-name name version))
(sha256
(base32
- "17ac48g414h9dhi0k4wrah4gyik0q5r0xw3kc01c02qfjwimqsx7"))))
+ "005wgcxq7f2q9g6wvfk29n2nms262w0abpz93sfvx79yv6qxppzs"))))
(build-system r-build-system)
(arguments
`(#:modules ((guix build r-build-system)
#t)))))
(propagated-inputs
`(("r-crayon" ,r-crayon)
+ ("r-digest" ,r-digest)
("r-fastmap" ,r-fastmap)
+ ("r-htmltools" ,r-htmltools)
("r-httpuv" ,r-httpuv)
- ("r-mime" ,r-mime)
("r-jsonlite" ,r-jsonlite)
- ("r-xtable" ,r-xtable)
- ("r-digest" ,r-digest)
- ("r-htmltools" ,r-htmltools)
+ ("r-later" ,r-later)
+ ("r-mime" ,r-mime)
+ ("r-promises" ,r-promises)
("r-r6" ,r-r6)
- ("r-sourcetools" ,r-sourcetools)))
+ ("r-rlang" ,r-rlang)
+ ("r-sourcetools" ,r-sourcetools)
+ ("r-withr" ,r-withr)
+ ("r-xtable" ,r-xtable)))
(inputs
`(("js-datatables" ,js-datatables)
("js-html5shiv" ,js-html5shiv)
("js-highlight" ,js-highlight)
("js-es5-shim" ,js-es5-shim)))
(native-inputs
- `(("uglify-js" ,uglify-js)))
+ `(("uglify-js" ,uglify-js)
+ ("gfortran" ,gfortran)))
(home-page "http://shiny.rstudio.com")
(synopsis "Easy interactive web applications with R")
(description
(define-public r-crosstalk
(package
(name "r-crosstalk")
- (version "1.0.0")
+ (version "1.1.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "crosstalk" version))
(sha256
(base32
- "0lfa89vhrzi7a1rghmygcjr8gzddw35sinb3jx6g49mc9jias7mk"))))
+ "03ihj7cimkklrbad9zic78xsrfcisygmgy859hqnx0hiph80p9rn"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-ggplot2" ,r-ggplot2)
- ("r-htmltools" ,r-htmltools)
+ `(("r-htmltools" ,r-htmltools)
("r-jsonlite" ,r-jsonlite)
("r-lazyeval" ,r-lazyeval)
- ("r-r6" ,r-r6)
- ("r-shiny" ,r-shiny)))
+ ("r-r6" ,r-r6)))
(home-page "https://rstudio.github.io/crosstalk/")
(synopsis "Inter-widget interactivity for HTML widgets")
(description
"1a8mi70x79a691r40yiw684jkg1mr9n8agkxlcksxcnrdybs9c0x"))))
(build-system r-build-system)
(inputs `(("libjpeg" ,libjpeg)))
- (home-page "http://www.rforge.net/jpeg/")
+ (home-page "https://www.rforge.net/jpeg/")
(synopsis "Read and write JPEG images with R")
(description "This package provides a way to read, write and display
bitmap images stored in the JPEG format with R. It can read and write both
(define-public r-glue
(package
(name "r-glue")
- (version "1.3.1")
+ (version "1.3.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "glue" version))
(sha256
(base32
- "1a1ycg9r3gd91visp49q49rsrdgyf8kr9dxdy3hk99kikn4z5hag"))))
+ "0alklqcf68kmccssp4j7a7fv553pyqyy6mkkfslav83inppm4d3g"))))
(build-system r-build-system)
(home-page "https://github.com/tidyverse/glue")
(synopsis "Interpreted string literals")
(sha256
(base32 "121byimd6bg7jbrq5wz5fpi0vxq0vh8g724vkhnjzszbvcv1xsb7"))))
(build-system r-build-system)
- (home-page "http://mevik.net/work/software/pls.html")
+ (home-page "https://mevik.net/work/software/pls.html")
(synopsis "Partial Least Squares and Principal Component Regression")
(description
"The pls package implements multivariate regression methods: Partial Least
(define-public r-rcpp
(package
(name "r-rcpp")
- (version "1.0.3")
+ (version "1.0.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "Rcpp" version))
(sha256
- (base32 "03h3zyjq948y0hrrs95lfk4zgx6wfrg64hjlrfrzf5na7bfh0d9b"))))
+ (base32 "1m80pdhzi2p82db5xkbwc2m3fzv6df59955yj03nlq40fj7zx4nr"))))
(build-system r-build-system)
- (native-inputs
- `(("r-knitr" ,r-knitr))) ; for vignettes
(home-page "http://www.rcpp.org")
(synopsis "Seamless R and C++ integration")
(description
(base32
"0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"))))
(build-system r-build-system)
- (home-page "http://www.rforge.net/fastmatch")
+ (home-page "https://www.rforge.net/fastmatch")
(synopsis "Fast match function")
(description
"This package provides a fast @code{match} replacement for cases that
(define-public r-ffbase
(package
(name "r-ffbase")
- (version "0.12.7")
+ (version "0.12.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "ffbase" version))
(sha256
(base32
- "04kxx2f3f0743c5nvpb7x1x0pcd220dazpd5ag1pidxbz3xa85nw"))))
+ "0mjk7dkq1ginqqfvngzny747ggf9a8fd7kblq96n5ys1jrwjyqhq"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bit" ,r-bit)
(define-public r-ggally
(package
(name "r-ggally")
- (version "1.4.0")
+ (version "1.5.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "GGally" version))
(sha256
(base32
- "1zjmcc5bzagvy7c5cmdcl39xmx07fwi98yrj4i05w7y40kqcsiws"))))
+ "082s321zspg5al6acigwrhg4fsrmkkk5caabg662qbcy8v6n34h6"))))
(properties `((upstream-name . "GGally")))
(build-system r-build-system)
(inputs
(define-public r-rmysql
(package
(name "r-rmysql")
- (version "0.10.19")
+ (version "0.10.20")
(source
(origin
(method url-fetch)
(uri (cran-uri "RMySQL" version))
(sha256
(base32
- "0269pfq791qvax69lrwvvzgllyzm3cy3sdp9sakwxzvw5pxk2vhv"))))
+ "0lv9m6zpm8dgv7yixr6xhw379vbq45d7n7gkrmjrppdj8vcih77i"))))
(properties `((upstream-name . "RMySQL")))
(build-system r-build-system)
(inputs
(define-public r-recipes
(package
(name "r-recipes")
- (version "0.1.9")
+ (version "0.1.10")
(source
(origin
(method url-fetch)
(uri (cran-uri "recipes" version))
(sha256
(base32
- "1fmnka583sqm6v5bhxbllb4cd5xfqbf268aij2xgxiwckv3c0ynm"))))
+ "11f96aanrzi2v6cn49fhvf9y4cmhra63wcy6nvpv6hcfaqqmwd2g"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
("r-tidyselect" ,r-tidyselect)
("r-timedate" ,r-timedate)
("r-withr" ,r-withr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/topepo/recipes")
(synopsis "Preprocessing tools to create design matrices")
(description
(base32
"0gm9ii7ncvllxbvyk6srsiinjmqyj7lmh84w43x4nhqpvafj9q4q"))))
(build-system r-build-system)
- (home-page "http://www.rforge.net/uuid")
+ (home-page "https://www.rforge.net/uuid")
(synopsis "Tools for generating and handling of UUIDs")
(description
"This package provides tools for generating and handling of
`(("r-leaps" ,r-leaps)
("r-locfit" ,r-locfit)
("r-mgcv" ,r-mgcv)))
- (home-page "http://www.stat.uiowa.edu/~kchan/TSA.htm")
+ (home-page "https://homepage.divms.uiowa.edu/~kchan/TSA.htm")
(synopsis "Time series analysis")
(description
"This package contains R functions and datasets detailed in the book
(propagated-inputs
`(("r-shiny" ,r-shiny)
("r-jsonlite" ,r-jsonlite)))
- (home-page "http://cran.r-project.org/web/packages/shinyAce")
+ (home-page "https://cran.r-project.org/web/packages/shinyAce/")
(synopsis "Ace editor bindings for Shiny")
(description
"This package provides Ace editor bindings to enable a rich text editing
environment within Shiny.")
(license license:expat)))
+(define-public r-randomizr
+ (package
+ (name "r-randomizr")
+ (version "0.20.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "randomizr" version))
+ (sha256
+ (base32
+ "0dljyfldnardaps3fq6vi5wcs9x6qfaq5apapa78c51lnaa6fn9h"))))
+ (properties `((upstream-name . "randomizr")))
+ (build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://declaredesign.org/r/randomizr/")
+ (synopsis "Tools for common forms of random assignment and sampling")
+ (description
+ "This package provides tools for generating random assignments for common
+experimental designs and random samples for common sampling designs.")
+ (license license:expat)))
+
(define-public r-base64url
(package
(name "r-base64url")
(define-public r-radiant-data
(package
(name "r-radiant-data")
- (version "1.0.6")
+ (version "1.3.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "radiant.data" version))
(sha256
(base32
- "08x7zasxf429m021482p86lx3zc6dqz2mih0id8s34isg4gafapg"))
+ "19sjjb49inrfl7jzq4zpwhdslni0zrp30bl58pisin29ka3ylpzs"))
(modules '((guix build utils)))
(snippet
'(begin
("r-dt" ,r-dt)
("r-glue" ,r-glue)
("r-ggplot2" ,r-ggplot2)
- ("r-gridextra" ,r-gridextra)
("r-import" ,r-import)
("r-jsonlite" ,r-jsonlite)
("r-knitr" ,r-knitr)
("r-lubridate" ,r-lubridate)
("r-magrittr" ,r-magrittr)
("r-markdown" ,r-markdown)
+ ("r-mass" ,r-mass)
+ ("r-patchwork" ,r-patchwork)
("r-plotly" ,r-plotly)
("r-psych" ,r-psych)
+ ("r-randomizr" ,r-randomizr)
("r-readr" ,r-readr)
("r-readxl" ,r-readxl)
("r-rlang" ,r-rlang)
"00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9"))))
(build-system r-build-system)
(propagated-inputs `(("r-proto" ,r-proto)))
- (home-page "http://gsubfn.googlecode.com")
+ (home-page "https://code.google.com/archive/p/gsubfn/")
(synopsis "Utilities for strings and function arguments.")
(description
"This package provides @code{gsubfn} which is like @code{gsub} but can
`(("r-foreign" ,r-foreign)
("r-lattice" ,r-lattice)
("r-sp" ,r-sp)))
- (home-page "http://r-forge.r-project.org/projects/maptools/")
+ (home-page "https://r-forge.r-project.org/projects/maptools/")
(synopsis "Tools for reading and handling spatial objects")
(description
"This package provides a set of tools for manipulating and reading
(build-system r-build-system)
(propagated-inputs
`(("r-snow" ,r-snow)))
- (home-page "http://cran.r-project.org/web/packages/snowfall/")
+ (home-page "https://cran.r-project.org/web/packages/snowfall/")
(synopsis "Easier cluster computing")
(description "This package is a usability wrapper around snow for easier
development of parallel R programs. This package offers e.g. extended error
(define-public r-hdf5r
(package
(name "r-hdf5r")
- (version "1.3.1")
+ (version "1.3.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "hdf5r" version))
(sha256
(base32
- "0hvi2cvyv6zlxgpawnmsihxclp2ln88slbrnmaxagmjswskxsrpx"))))
+ "0c2p06k9bp9rf0fyavnxw5d8jr2bbgx3gjblahz581cpvsfksj9i"))))
(build-system r-build-system)
(inputs
`(("hdf5" ,hdf5)
(propagated-inputs
`(("r-bit64" ,r-bit64)
("r-r6" ,r-r6)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://hhoeflin.github.io/hdf5r")
(synopsis "Interface to the HDF5 binary data format")
(description
(define-public r-officer
(package
(name "r-officer")
- (version "0.3.7")
+ (version "0.3.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "officer" version))
(sha256
(base32
- "1zyrcf0xxm67bskynjac8dhil2as7rb0mmqaq30zp9lrgfwiycpz"))))
+ "0xhx5n6qksyh2s9hvwhnc8y0hn362asc5y94ld06snad786hz0rw"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-digest" ,r-digest)
- ("r-magrittr" ,r-magrittr)
+ `(("r-magrittr" ,r-magrittr)
("r-r6" ,r-r6)
("r-uuid" ,r-uuid)
("r-xml2" ,r-xml2)
("r-zip" ,r-zip)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://davidgohel.github.io/officer")
(synopsis "Manipulation of Word and PowerPoint documents")
(description
(define-public r-proc
(package
(name "r-proc")
- (version "1.16.1")
+ (version "1.16.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "pROC" version))
(sha256
(base32
- "0qkp1byl2xspxaaf0by6mvvrhg7wlz6fxmynz2hkh0ds24w7ig9m"))))
+ "0apwa5zzqh74pjnvf5a1s5qf6i9r5h44jdllfrwymkd2v479d2xn"))))
(properties `((upstream-name . "pROC")))
(build-system r-build-system)
(propagated-inputs
`(("r-plyr" ,r-plyr)
("r-rcpp" ,r-rcpp)))
- (home-page "http://expasy.org/tools/pROC/")
+ (home-page "https://web.expasy.org/pROC/")
(synopsis "Display and analyze ROC curves")
(description
"This package provides tools for visualizing, smoothing and comparing
(define-public r-pwr
(package
(name "r-pwr")
- (version "1.2-2")
+ (version "1.3-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "pwr" version))
(sha256
(base32
- "0r5g781lr677vp3zyhgmi7r68c87l8gd05l1s3ffnxgn5wf043sm"))))
+ "1kfzy73v3z6ipc3kdfkcjrp4b4p5k54nwk796gqi36srm93hgc2v"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(define-public r-glmmtmb
(package
(name "r-glmmtmb")
- (version "1.0.0")
+ (version "1.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "glmmTMB" version))
(sha256
(base32
- "1md4yw4kbng953rz1n9g1v2xffk3cxx1qmp0kvbdayg1s82l1rgx"))))
+ "0sdx1q7wc7895xh8747r4p0wkij0xjgn5ij62ipi9423zd0sr0mm"))))
(properties `((upstream-name . "glmmTMB")))
(build-system r-build-system)
(propagated-inputs
(define-public r-ggeffects
(package
(name "r-ggeffects")
- (version "0.14.1")
+ (version "0.14.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggeffects" version))
(sha256
(base32
- "07pvs18vlybp96zz1wjr7cwiwi1cvjwkb9ahxzq0vd6adnd6ya59"))))
+ "1y3yfb07jrr6vkc8hk6rp52l70dj7042jvqgjzllslzy7hx2jhyw"))))
(build-system r-build-system)
(propagated-inputs
`(("r-insight" ,r-insight)
("r-mass" ,r-mass)
("r-sjlabelled" ,r-sjlabelled)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/strengejacke/ggeffects")
(synopsis "Create tidy data frames of marginal effects for ggplot")
(description
(define-public r-sjplot
(package
(name "r-sjplot")
- (version "2.8.2")
+ (version "2.8.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "sjPlot" version))
(sha256
- (base32 "16721a5006q0gv45zjcwnkykxhjkzpq5n35vhik0g0ixgm3a2vci"))))
+ (base32 "0ip1rkjlhyf3axlc8qqss1qq1f0xrda890c1jmcbhm98wwjw264f"))))
(properties `((upstream-name . "sjPlot")))
(build-system r-build-system)
(propagated-inputs
`(("r-bayestestr" ,r-bayestestr)
("r-dplyr" ,r-dplyr)
("r-effectsize" ,r-effectsize)
- ("r-forcats" ,r-forcats)
("r-ggeffects" ,r-ggeffects)
("r-ggplot2" ,r-ggplot2)
("r-insight" ,r-insight)
("r-sjmisc" ,r-sjmisc)
("r-sjstats" ,r-sjstats)
("r-tidyr" ,r-tidyr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://strengejacke.github.io/sjPlot/")
(synopsis "Data visualization for statistics in social science")
(description
(define-public r-rcppparallel
(package
(name "r-rcppparallel")
- (version "4.4.4")
+ (version "5.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "RcppParallel" version))
(sha256
(base32
- "0p13f2mywjr7gmskf8ri4y8p5yr1bvr4xrpw2w11vdvafwz1vcia"))))
+ "1mhd6vp47xmfw533h0pkvydv96m57fspvd85g8m7iqb5rcxvhhdb"))))
(properties `((upstream-name . "RcppParallel")))
(build-system r-build-system)
- (home-page "http://rcppcore.github.io/RcppParallel")
+ (home-page "https://rcppcore.github.io/RcppParallel/")
(synopsis "Parallel programming tools for Rcpp")
(description
"This package provides high level functions for parallel programming with
(base32
"0scar396wiq6wkbkvwp4qrxqc1m075y56p37i6iry5rw796p1i86"))))
(build-system r-build-system)
- (home-page "http://www.rmetrics.org")
+ (home-page "https://www.rmetrics.org")
(synopsis "Stable distribution functions")
(description
"This package provides density, probability and quantile functions, and
`(("libtiff" ,libtiff)
("libjpeg" ,libjpeg)
("zlib" ,zlib)))
- (home-page "http://www.rforge.net/tiff/")
+ (home-page "https://www.rforge.net/tiff/")
(synopsis "Read and write TIFF images")
(description
"This package provides an easy and simple way to read, write and display
(define-public r-waveslim
(package
(name "r-waveslim")
- (version "1.7.5.2")
+ (version "1.8.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "waveslim" version))
(sha256
(base32
- "166ai4q3mlh3v338si952z7fbgph80h0l4ws6bna8ig5jx81rnmz"))))
+ "0ibivnhz0l06sss5rrrcvyiwg3qpbyk3qn4vx4pp90kj09x4yg0k"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
(define-public r-tidytree
(package
(name "r-tidytree")
- (version "0.3.1")
+ (version "0.3.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidytree" version))
(sha256
- (base32 "1bnzs62z2l8ck2h9gabmxvayizv4nfn8dmyzry83fv0cspjbyiv7"))))
+ (base32 "0dx9jn19mfykn20camsmq1amlgg0w6z5hn5rdqygs1fk1l5aazad"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ape" ,r-ape)
("r-magrittr" ,r-magrittr)
("r-rlang" ,r-rlang)
("r-tibble" ,r-tibble)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/GuangchuangYu/tidytree")
(synopsis "Tidy tool for phylogenetic tree data manipulation")
(description
("r-reportr" ,r-reportr)
("r-rnifti" ,r-rnifti)
("r-shades" ,r-shades)))
- (home-page "http://www.tractor-mri.org.uk")
+ (home-page "https://www.tractor-mri.org.uk")
(synopsis "Read, manipulate and visualize magnetic resonance images")
(description
"This package provides functions for working with magnetic resonance
(properties `((upstream-name . "Iso")))
(build-system r-build-system)
(native-inputs `(("gfortran" ,gfortran)))
- (home-page "http://www.stat.auckland.ac.nz/~rolf/")
+ (home-page "https://www.stat.auckland.ac.nz/~rolf/")
(synopsis "Functions to perform isotonic regression")
(description
"This package provides support for linear order and unimodal
(define-public r-spatialextremes
(package
(name "r-spatialextremes")
- (version "2.0-7.2")
+ (version "2.0-8")
(source
(origin
(method url-fetch)
(uri (cran-uri "SpatialExtremes" version))
(sha256
(base32
- "0aqq9ryxi4xsdqjhc1lhb7ai8szs7m2vys6nn0ygps1w3pm4xwj8"))))
+ "0r2byz5xxc46zqnigdax28q7446ibmzmsmi10lmm2hdks3ml6sl3"))))
(properties
`((upstream-name . "SpatialExtremes")))
(build-system r-build-system)
("r-plyr" ,r-plyr)
("r-survival" ,r-survival)
("r-zoo" ,r-zoo)))
- (home-page "http://BendixCarstensen.com/Epi/")
+ (home-page "https://BendixCarstensen.com/Epi/")
(synopsis "Statistical analysis in epidemiology")
(description
"This package provides functions for demographic and epidemiological
(define-public r-mcmc
(package
(name "r-mcmc")
- (version "0.9-6.1")
+ (version "0.9-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "mcmc" version))
(sha256
(base32
- "1i1nhdapyijvm58zx38q28zk01ndmi6smjivxk5xs2cx9b6v2av9"))))
+ "0q42m8ab7b6bxhns494ksjdss5f3c5m2jjfdlfj6fk1nz7ax7i5p"))))
(build-system r-build-system)
(home-page "https://www.stat.umn.edu/geyer/mcmc/")
(synopsis "Markov chain Monte Carlo")
(define-public r-nonnest2
(package
(name "r-nonnest2")
- (version "0.5-2")
+ (version "0.5-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "nonnest2" version))
(sha256
(base32
- "1bq44qqmm59j91m0sny4xnqmxqlga4cm48qdsw8xfs3x19xwmxk6"))))
+ "1mnv4pa583ir9s03h952hk40lwdywr3g88g76sk1zsa54rcmn82c"))))
(build-system r-build-system)
(propagated-inputs
`(("r-compquadform" ,r-compquadform)
("r-lavaan" ,r-lavaan)
("r-mvtnorm" ,r-mvtnorm)
("r-sandwich" ,r-sandwich)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://cran.r-project.org/web/packages/nonnest2/")
(synopsis "Tests of non-nested models")
(description
(base32
"1lbx1bxwkf9dw6q46w40pp7h5nkxgghmx8rkpaymm6iybc7gyir2"))))
(build-system r-build-system)
- (home-page "http://stat.sfu.ca/statgen/research/stepwise.html")
+ (home-page "https://stat.sfu.ca/statgen/research/stepwise.html")
(synopsis "Stepwise detection of recombination breakpoints")
(description
"This package provides a stepwise approach to identifying recombination
(define-public r-units
(package
(name "r-units")
- (version "0.6-5")
+ (version "0.6-6")
(source
(origin
(method url-fetch)
(uri (cran-uri "units" version))
(sha256
(base32
- "02nls8m0r1r7kljs4x35naz3szq62hyqyd5vracf1xwi1kz5kdsh"))))
+ "11x6xz1fbml28xmrhgn4sii9vfyj3gyfc1dfxahdg9cszdmcgdnh"))))
(build-system r-build-system)
(inputs
`(("udunits" ,udunits)))
(propagated-inputs
`(("r-rcpp" ,r-rcpp)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/r-quantities/units/")
(synopsis "Measurement Units for R Vectors")
(description
(define-public r-pegas
(package
(name "r-pegas")
- (version "0.12")
+ (version "0.13")
(source
(origin
(method url-fetch)
(uri (cran-uri "pegas" version))
(sha256
- (base32 "0sb8cmz4d238mcb56hv9fa0cagm00k82r7aj4cj4lxa1flxlpy8p"))))
+ (base32 "002i7s4g0nhnq0v05gs0yssqiyhpq2f7rw2rhn31hsbgxc86frvy"))))
(build-system r-build-system)
(propagated-inputs
`(("r-adegenet" ,r-adegenet)
`(("r-genetics" ,r-genetics)
("r-rcpp" ,r-rcpp)
("r-snpstats" ,r-snpstats)))
- (home-page "http://stat.sfu.ca/statgen/research/ldheatmap.html")
+ (home-page "https://stat.sfu.ca/statgen/research/ldheatmap.html")
(synopsis "Graphical display of pairwise linkage disequilibria between SNPs")
(description
"This package provides tools to produce a graphical display, as a heat
(base32
"0qs5jl0snzfchgpp6pabncwywxcmi743g91jvjiyyzw0lw85yv4s"))))
(build-system r-build-system)
- (home-page "http://stat.sfu.ca/statgen/research/hapassoc.html")
+ (home-page "https://stat.sfu.ca/statgen/research/hapassoc.html")
(synopsis "Inference of trait associations with SNP haplotypes")
(description
"Hapassoc performs likelihood inference of trait associations with
("jdk" ,icedtea-8 "jdk")
("pcre" ,pcre)
("zlib" ,zlib)))
- (home-page "http://www.rforge.net/rJava/")
+ (home-page "https://www.rforge.net/rJava/")
(synopsis "Low-Level R to Java interface")
(description
"This package provides a low-level interface to the Java VM very much
(define-public r-ggplotify
(package
(name "r-ggplotify")
- (version "0.0.4")
+ (version "0.0.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggplotify" version))
(sha256
(base32
- "0nv3wdmxnc5ww9m3xlgnb0jp30j45dg33nqc6gg3y36svg8anjcg"))))
+ "0pfnp4lrissf21z7867kdm6slr979kchyva8iaf83i1302kscph3"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
("r-gridgraphics" ,r-gridgraphics)
("r-rvcheck" ,r-rvcheck)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/GuangchuangYu/ggplotify")
(synopsis "Convert plots to @code{grob} or @code{ggplot} object")
(description
(define-public r-ggraph
(package
(name "r-ggraph")
- (version "2.0.1")
+ (version "2.0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggraph" version))
(sha256
(base32
- "0q2yqsb981a2arf9j530kqs61vw38ixyxbhb6yvv7skgbck02r6y"))))
+ "1ckq82hg52vr2wydkqv2wrppgjyvddd6bwqzrngqlm7j71xapjl0"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
("r-scales" ,r-scales)
("r-tidygraph" ,r-tidygraph)
("r-viridis" ,r-viridis)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://cran.r-project.org/web/packages/ggraph/")
(synopsis "Implementation of grammar of graphics for graphs and networks")
(description
(define-public r-batchtools
(package
(name "r-batchtools")
- (version "0.9.12")
+ (version "0.9.13")
(source
(origin
(method url-fetch)
(uri (cran-uri "batchtools" version))
(sha256
(base32
- "16x524hvy9d8p7r4fi1c8mixcvzgsjbf3y0vxaa56ssbbab4p7f9"))))
+ "02bwfinwgn5nl638997javig61jmr0ci0qybmprz13jnvmam1yns"))))
(build-system r-build-system)
(propagated-inputs
`(("r-backports" ,r-backports)
("r-rappdirs" ,r-rappdirs)
("r-stringi" ,r-stringi)
("r-withr" ,r-withr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/mllg/batchtools")
(synopsis "Tools for computation on batch systems")
(description
(define-public r-ggfortify
(package
(name "r-ggfortify")
- (version "0.4.8")
+ (version "0.4.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggfortify" version))
(sha256
(base32
- "191q2z7w0l4v7swjlxs2hjgbjngw2838688s7ygnj0kigsm310f3"))))
+ "1p6knrbyaynaqwd939w09hpf1zz1gn95cb46sfgppl8l98krb2h5"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
("r-stringr" ,r-stringr)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/sinhrks/ggfortify")
(synopsis "Data visualization tools for statistical analysis results")
(description
(define-public r-xgboost
(package
(name "r-xgboost")
- (version "0.90.0.2")
+ (version "1.0.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "xgboost" version))
(sha256
(base32
- "1gy9rzg43mjpfis893vf15drmbigfn0481zrzss9ajnmnk0q8194"))))
+ "0fx5qjpjjirzhplddqmxlysyqszp79w74x00b5shp6p2lzy6yd9a"))))
(build-system r-build-system)
(propagated-inputs
`(("r-data-table" ,r-data-table)
("r-magrittr" ,r-magrittr)
("r-matrix" ,r-matrix)
("r-stringi" ,r-stringi)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/dmlc/xgboost")
(synopsis "Extreme gradient boosting")
(description
(define-public r-uwot
(package
(name "r-uwot")
- (version "0.1.5")
+ (version "0.1.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "uwot" version))
(sha256
(base32
- "0pz9wa89xq4d119q86lskrznf979m0r1db8iaprcz7kxbi6b8lrj"))))
+ "1jzh8r1h6f7pw7pb1fr32vn6ai9g10s56ahkq0vi77iznihy1rpd"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dqrng" ,r-dqrng)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-rcppannoy" ,r-rcppannoy)
- ("r-rcppparallel" ,r-rcppparallel)
("r-rcppprogress" ,r-rcppprogress)
("r-rspectra" ,r-rspectra)))
(home-page "https://github.com/jlmelville/uwot")
"0iwc06blr5sx7rylwczi2jrha8sk8qs0jklflwpidl0zj1jxdggp"))))
(properties `((upstream-name . "RhpcBLASctl")))
(build-system r-build-system)
- (home-page "http://prs.ism.ac.jp/~nakama/Rhpc/")
+ (home-page "https://prs.ism.ac.jp/~nakama/Rhpc/")
(synopsis "Control the number of threads on BLAS")
(description
"This package allows you to control the number of threads the BLAS
(license license:gpl3)))
(define-public r-patchwork
- ;; There has been no public release yet.
- (let ((commit "fd7958bae3e7a1e30237c751952e412a0a1d1242")
- (revision "1"))
- (package
- (name "r-patchwork")
- (version (git-version "0.0.1" revision commit))
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/thomasp85/patchwork.git")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "00fq520xwy1ysg4k8x48x9b0yy9wyi8y8zj6dvxjg4bwx0yyp6s4"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-ggplot2" ,r-ggplot2)
- ("r-gtable" ,r-gtable)))
- (home-page "https://github.com/thomasp85/patchwork")
- (synopsis "Compose ggplot2 plots")
- (description
- "The @code{ggplot2} package provides a strong API for sequentially
+ (package
+ (name "r-patchwork")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "patchwork" version))
+ (sha256
+ (base32
+ "0qrwbcswh7ylrmghi17k6wk7w51cz6mcmvcyyd41hy3m2ywmkywb"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)
+ ("r-gtable" ,r-gtable)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/thomasp85/patchwork")
+ (synopsis "Compose ggplot2 plots")
+ (description
+ "The @code{ggplot2} package provides a strong API for sequentially
building up a plot, but does not concern itself with composition of multiple
plots. Patchwork is a package that expands the API to allow for arbitrarily
complex composition of plots by providing mathmatical operators for combining
multiple plots.")
- (license license:expat))))
+ (license license:expat)))
(define-public r-liger
(package
(license license:gpl3)))
(define-public r-harmony
- ;; There are no tagged commits
- (let ((commit "4d1653870d4dd70fff1807c182882db1fbf9af5a")
- (revision "1"))
- (package
- (name "r-harmony")
- (version (git-version "1.0" revision commit))
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/immunogenomics/harmony")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1gasdldr4aalr9h2q9kmm3y4i7azkgnhdn4bmvsszs7lg9xacw85"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-cowplot" ,r-cowplot)
- ("r-dplyr" ,r-dplyr)
- ("r-ggplot2" ,r-ggplot2)
- ("r-irlba" ,r-irlba)
- ("r-matrix" ,r-matrix)
- ("r-rcpp" ,r-rcpp)
- ("r-rcpparmadillo" ,r-rcpparmadillo)
- ("r-rcppprogress" ,r-rcppprogress)
- ("r-rlang" ,r-rlang)
- ("r-tibble" ,r-tibble)
- ("r-tidyr" ,r-tidyr)))
- (home-page "https://github.com/immunogenomics/harmony")
- (synopsis "Integration of single cell sequencing data")
- (description
- "This package provides an implementation of the Harmony algorithm for
+ (package
+ (name "r-harmony")
+ (version "0.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/immunogenomics/harmony")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "05r401q09rbr6fqhb9mbd95082cjdi3nag1cv6zn96xkr0f6imq9"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ (for-each delete-file '("config.status" "configure"))
+ #t))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-cowplot" ,r-cowplot)
+ ("r-dplyr" ,r-dplyr)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-irlba" ,r-irlba)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcpparmadillo" ,r-rcpparmadillo)
+ ("r-rcppprogress" ,r-rcppprogress)
+ ("r-rlang" ,r-rlang)
+ ("r-tibble" ,r-tibble)
+ ("r-tidyr" ,r-tidyr)))
+ (native-inputs
+ `(("autoconf" ,autoconf)))
+ (home-page "https://github.com/immunogenomics/harmony")
+ (synopsis "Integration of single cell sequencing data")
+ (description
+ "This package provides an implementation of the Harmony algorithm for
single cell integration, described in Korsunsky et al
@url{doi.org/10.1101/461954}. The package includes a standalone Harmony
function and interfaces to external frameworks.")
- (license license:gpl3))))
+ (license license:gpl3)))
(define-public r-covr
(package
(define-public r-graphlayouts
(package
(name "r-graphlayouts")
- (version "0.5.0")
+ (version "0.6.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "graphlayouts" version))
(sha256
(base32
- "03dizbhhdhnzbj2i5zvqgs617kwcv4h2pha4f16adic0fph1rxl3"))))
+ "1la016m37kp79zk8p1yx9kaha8y6d4w52w39h0mzv1mfsi6d75w0"))))
(properties `((upstream-name . "graphlayouts")))
(build-system r-build-system)
(propagated-inputs
(define-public r-parameters
(package
(name "r-parameters")
- (version "0.5.0")
+ (version "0.6.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "parameters" version))
(sha256
(base32
- "19cblrq079svp5j3wgikw5fsdbsp1w0f2llm7kcf1rg5w1aagjr7"))))
+ "0zin3ikc013hc713n5zs0dbhc3m4nfw1vhc3924z0mrww8r241xn"))))
(properties `((upstream-name . "parameters")))
(build-system r-build-system)
(propagated-inputs
`(("r-bayestestr" ,r-bayestestr)
("r-insight" ,r-insight)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://cran.r-project.org/web/packages/parameters")
(synopsis "Processing of model parameters")
(description
(define-public r-accept
(package
(name "r-accept")
- (version "0.7.0")
+ (version "0.7.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "accept" version))
(sha256
(base32
- "1r4mhy9g4wjcjgdd0gwdarmr09292il3vdkmx0hz7vh9mffyr9kx"))))
+ "0pn8q0jsi0nb2mm2kv6sjczflflshhy55y7nqqnk70yx9f6wm83y"))))
(properties `((upstream-name . "accept")))
(build-system r-build-system)
(propagated-inputs
(build-system r-build-system)
(propagated-inputs
`(("r-lars" ,r-lars)))
- (home-page "http://www.stat.umn.edu/~hzou")
+ (home-page "http://users.stat.umn.edu/~zouxx019/")
(synopsis "Elastic-Net for sparse estimation and sparse PCA")
(description
"This package provides functions for fitting the entire solution path of
("r-rcpp" ,r-rcpp)
("r-stringr" ,r-stringr)
("r-xml" ,r-xml)))
- (home-page "http://dusp.mit.edu/faculty/ezra-glenn")
+ (home-page "https://dusp.mit.edu/faculty/ezra-haber-glenn")
(synopsis "Work with data from the US Census")
(description
"This package provides a general toolkit for downloading, managing,
("r-readbitmap" ,r-readbitmap)
("r-stringr" ,r-stringr)))
(native-inputs `(("pkg-config" ,pkg-config)))
- (home-page "http://dahtah.github.io/imager")
+ (home-page "https://dahtah.github.io/imager/")
(synopsis "Image processing library")
(description
"This is a package for fast image processing for images in up to 4
(define-public r-caret
(package
(name "r-caret")
- (version "6.0-85")
+ (version "6.0-86")
(source
(origin
(method url-fetch)
(uri (cran-uri "caret" version))
(sha256
(base32
- "0jxbf2zcvbb5s2pnjzg182awjvylc57q7z5plx6gs6gm62zxjafs"))))
+ "0dyflixdw98lvk2x3w136sw24ij0fwx5c7l709dmqr5z7xy1qjns"))))
(build-system r-build-system)
(propagated-inputs
`(("r-foreach" ,r-foreach)
("r-recipes" ,r-recipes)
("r-reshape2" ,r-reshape2)
("r-withr" ,r-withr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/topepo/caret")
(synopsis "Classification and regression training")
(description
(build-system r-build-system)
(propagated-inputs
`(("r-quantreg" ,r-quantreg)))
- (home-page "http://www.ms.uky.edu/~mai/EmpLik.html")
+ (home-page "https://www.ms.uky.edu/~mai/EmpLik.html")
(synopsis "Empirical likelihood ratio for censored/truncated data")
(description
"This package provides empirical likelihood ratio tests for
(define-public r-isocodes
(package
(name "r-isocodes")
- (version "2019.12.22")
+ (version "2020.03.16")
(source
(origin
(method url-fetch)
(uri (cran-uri "ISOcodes" version))
(sha256
(base32
- "1k2f2258bwzs0b3nxma9kcw395qkljvk514a7047rx4dn0iwd874"))))
+ "1hz1sj57qkkkrgn8slsz2n4jv1fkyp40503j9rg30lxy4gmb83hn"))))
(properties `((upstream-name . "ISOcodes")))
(build-system r-build-system)
(home-page "https://cran.r-project.org/package=ISOcodes")
(define-public r-quanteda
(package
(name "r-quanteda")
- (version "2.0.0")
+ (version "2.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "quanteda" version))
(sha256
(base32
- "0snr610vahbdqkmma0zy5mg5qbb6n1b8sgsclqb2sccn1gg38vyy"))))
+ "0pym6vdzqbkyj87m3pla229092xvvx4j830x67qflxzzdmc9dzhz"))))
(properties `((upstream-name . "quanteda")))
(build-system r-build-system)
(propagated-inputs
("r-stringi" ,r-stringi)
("r-xml2" ,r-xml2)
("r-yaml" ,r-yaml)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://quanteda.io")
(synopsis "Quantitative analysis of textual data")
(description
(define-public r-cdm
(package
(name "r-cdm")
- (version "7.4-19")
+ (version "7.5-15")
(source
(origin
(method url-fetch)
(uri (cran-uri "CDM" version))
(sha256
(base32
- "1ln1r3rk004fmk55iy08bjh3vv4wnkb8zg2wj3r9rq7pi8jn8fv4"))))
+ "159ny2dz0rf1r3k1mqlfwambffc8rx425sggf5bn51nybpzanq3l"))))
(properties `((upstream-name . "CDM")))
(build-system r-build-system)
(propagated-inputs
(define-public r-tam
(package
(name "r-tam")
- (version "3.3-10")
+ (version "3.4-26")
(source
(origin
(method url-fetch)
(uri (cran-uri "TAM" version))
(sha256
(base32
- "1rkjp5x6wrk1dfspp1imvfals0wvy4w1wb8a5mhfbnilc7vgnlbq"))))
+ "111d7qkxhwh1lfvldyh9d61pdb5vb6x8lr8n9h95ssvw07vjqvk9"))))
(properties `((upstream-name . "TAM")))
(build-system r-build-system)
(propagated-inputs
scales and utilities, including a spell check function for plot label fields
and an overall emphasis on typography.")
(license license:expat)))
+
+(define-public r-crochet
+ (package
+ (name "r-crochet")
+ (version "2.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "crochet" version))
+ (sha256
+ (base32
+ "1cbv79nyycxk6f8ldcsnn2pvgxqlnrj0qs19nhafnq2clxy863k6"))))
+ (build-system r-build-system)
+ (home-page "https://github.com/agrueneberg/crochet")
+ (synopsis "Implementation Helper for Matrix-Like Types")
+ (description
+ "Functions to help implement the extraction / subsetting / indexing
+function @code{[} and replacement function @code{[<-} of custom matrix-like
+types (based on S3, S4, etc.), modeled as closely to the base matrix class
+as possible (with tests to prove it).")
+ (license license:expat)))
+
+(define-public r-boa
+ (package
+ (name "r-boa")
+ (version "1.1.8-2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "boa" version))
+ (sha256
+ (base32
+ "04lhqk5qfvaz1jk90glr2yi5vq7cdy0w8m6g2lnzk359l9y41zhp"))))
+ (properties `((upstream-name . "boa")))
+ (build-system r-build-system)
+ (home-page "http://www.jstatsoft.org/v21/i11")
+ (synopsis "Library for @dfn{Bayesian Output Analysis Program} (BOA) for MCMC")
+ (description
+ "This package provides a menu-driven program and library of functions for
+carrying out convergence diagnostics and statistical and graphical analysis of
+@dfn{Markov chain Monte Carlo} (MCMC) sampling output.")
+ (license license:gpl2+)))
+
+(define-public r-httpcode
+ (package
+ (name "r-httpcode")
+ (version "0.2.0")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "httpcode" version))
+ (sha256
+ (base32
+ "06k853ihwzkcx4z3jzazpb03p91frqkwz18jy4fwr8j2nwyqbhgv"))))
+ (build-system r-build-system)
+ (home-page "https://github.com/sckott/httpcode")
+ (synopsis "HTTP status code helper")
+ (description "@code{httpcode} provides functionality for finding and
+explaining the meaning of @code{HTTP} status codes. Functions are included for
+searching for codes by full or partial number, by message, and to get
+appropriate dog and cat images for many status codes.")
+ (license license:expat)))
+
+(define-public r-latex2exp
+ (package
+ (name "r-latex2exp")
+ (version "0.4.0")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "latex2exp" version))
+ (sha256
+ (base32
+ "12nbcgfmv13k6sc6m326ras9bcvy380b7rxcxphn06r3cfkby0zw"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-stringr" ,r-stringr)
+ ("r-magrittr", r-magrittr)))
+ (home-page "https://github.com/stefano-meschiari/latex2exp/")
+ (synopsis "Use LaTeX expressions in plots")
+ (description "@code{latex2exp} parses and converts LaTeX math formulas to
+R's plotmath expressions, used to enter mathematical formulas and symbols to be
+rendered as text, axis labels, etc. throughout R's plotting system.")
+ (license license:expat)))
+
+(define-public r-oai
+ (package
+ (name "r-oai")
+ (version "0.3.0")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "oai" version))
+ (sha256
+ (base32
+ "1ipw9bq3ra66d1ddj1rylyyd20mlcb2i7phzhywra53s1fdifq1g"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-xml2" ,r-xml2)
+ ("r-httr" ,r-httr)
+ ("r-plyr" ,r-plyr)
+ ("r-stringr" ,r-stringr)
+ ("r-tibble" ,r-tibble)))
+ (home-page "https://github.com/ropensci/oai/")
+ (synopsis "General purpose OAI-PMH services client")
+ (description "@code{oai} provides a general purpose client to work with
+any @dfn{Open Archives Initiative Protocol for 'Metadata' Harvesting} (OAI-PMH)
+service. Functions are provided to work with the OAI-PMH verbs:
+@code{GetRecord}, @code{Identify}, @code{ListIdentifiers},
+@code{ListMetadataFormats}, @code{ListRecords}, and @code{ListSets}.")
+ (license license:expat)))
+
+(define-public r-argon2
+ (package
+ (name "r-argon2")
+ (version "0.2-0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "argon2" version))
+ (sha256
+ (base32
+ "0kqn06rpb39jlzizjlnc5c44mfic8llrshxn7ljgmyj35lbqwxqh"))))
+ (properties `((upstream-name . "argon2")))
+ (build-system r-build-system)
+ (home-page "https://github.com/wrathematics/argon2")
+ (synopsis "Secure password hashing based on the argon2 algorithm")
+ (description
+ "This package provides utilities for secure password hashing via the
+argon2 algorithm.")
+ (license license:bsd-2)))
+
+(define-public r-getpass
+ (package
+ (name "r-getpass")
+ (version "0.2-2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "getPass" version))
+ (sha256
+ (base32
+ "03ydafhh0sk3rcnpr3paajyji64x2ddp6p814p9mvbmyrblcgzcc"))))
+ (properties `((upstream-name . "getPass")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-rstudioapi" ,r-rstudioapi)))
+ (home-page "https://github.com/wrathematics/getPass")
+ (synopsis "Masked user input")
+ (description
+ "This package provides a micro-package for reading \"passwords\", i.e.
+reading user input with masking, so that the input is not displayed as it is
+typed. Currently, RStudio, the command line (every OS), and any platform
+where tcltk is present are supported.")
+ (license license:bsd-2)))
+
+(define-public r-remoter
+ (package
+ (name "r-remoter")
+ (version "0.4-0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "remoter" version))
+ (sha256
+ (base32
+ "1a7m63l8phv5jnazvdqdrqkaqjwqzaac5y4jm2jn0ypy4n8jvkfl"))))
+ (properties `((upstream-name . "remoter")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-argon2" ,r-argon2)
+ ("r-getpass" ,r-getpass)
+ ("r-pbdzmq" ,r-pbdzmq)
+ ("r-png" ,r-png)))
+ (home-page "https://github.com/RBigData/remoter")
+ (synopsis "Control a remote R session from a local one")
+ (description
+ "This package provides a set of utilities for client/server computing
+with R, controlling a remote R session (the server) from a local one (the
+client).")
+ (license license:bsd-2)))
HCoop / jackhill / guix / guix.git / blobdiff