#:use-module (guix hg-download)
#:use-module (guix git-download)
#:use-module (guix utils)
+ #:use-module (guix build-system ant)
#:use-module (guix build-system gnu)
#:use-module (guix build-system r)
#:use-module (guix build-system python)
#:use-module (guix build-system trivial)
#:use-module (gnu packages)
+ #:use-module (gnu packages algebra)
#:use-module (gnu packages check)
#:use-module (gnu packages compression)
#:use-module (gnu packages cran)
"09pl0w01fr09bsrwd7nz2r5psysj0z93w4chz3hm2havvqqvhg3s"))))
(build-system gnu-build-system)
(arguments
- `(#:disallowed-references (,tzdata-2017a)
+ `(#:disallowed-references (,tzdata-for-tests)
#:make-flags
(list (string-append "LDFLAGS=-Wl,-rpath="
(assoc-ref %outputs "out")
("perl" ,perl)
("pkg-config" ,pkg-config)
("texinfo" ,texinfo) ; for building HTML manuals
- ("tzdata" ,tzdata-2017a)
+ ("tzdata" ,tzdata-for-tests)
("xz" ,xz)))
(inputs
`(;; We need not only cairo here, but pango to ensure that tests for the
(define-public r-mass
(package
(name "r-mass")
- (version "7.3-48")
+ (version "7.3-49")
(source
(origin
(method url-fetch)
(uri (cran-uri "MASS" version))
(sha256
(base32
- "02q95ba909p2gxnzfp295ipxjnv14f7bm55nicxwn2kj8hizpzqd"))))
+ "1yjbnj1p4z0vw84wga8q5fyqiw4n6r7pc6rdwam7vsbiamyzfcqs"))))
(properties `((upstream-name . "MASS")))
(build-system r-build-system)
(home-page "http://www.stats.ox.ac.uk/pub/MASS4/")
(define-public r-nlme
(package
(name "r-nlme")
- (version "3.1-131")
+ (version "3.1-131.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "nlme" version))
(sha256
(base32
- "0k2nvdzhic6bzhfsbq6la6q6a1i5nlj4pnh6lpdxiiwvxdks3nkr"))))
+ "1xafi670a9jzb52kqxkacxfmy0viac3aql5byfq86kgkgla2sg0y"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
(define-public r-rpart
(package
(name "r-rpart")
- (version "4.1-12")
+ (version "4.1-13")
(source
(origin
(method url-fetch)
(uri (cran-uri "rpart" version))
(sha256
(base32
- "177p03w4m0qshb3sqkdyixim3f44g2an31v3vlbjmpzjvd5ff6yq"))))
+ "0k29qx3k3pj5sgrpg0p47yd8i811rmdakaw57bigpq1449asc4cf"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/rpart")
(synopsis "Recursive partitioning and regression trees")
(define-public r-stringr
(package
(name "r-stringr")
- (version "1.2.0")
+ (version "1.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "stringr" version))
(sha256
- (base32 "16hj2rmv8x03lp6cp2jk0k2plibvbggf444kp05przdvd03v7l31"))))
+ (base32 "07dvfbkhv8gk6l32j43jvxpmqlhqp0mdby406h5a3bsc6k94ic13"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-magrittr" ,r-magrittr)
+ `(("r-glue" ,r-glue)
+ ("r-magrittr" ,r-magrittr)
("r-stringi" ,r-stringi)))
(home-page "https://github.com/hadley/stringr")
(synopsis "Simple, consistent wrappers for common string operations")
(define-public r-gdtools
(package
(name "r-gdtools")
- (version "0.1.6")
+ (version "0.1.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "gdtools" version))
(sha256
(base32
- "103wnc8sq0iwcnj4j14hd420d2dqdyf13s3f25icsznrlyzdkhf5"))))
+ "122k9spymawfnfyksxyapwq9cigydy5nrjwhrwrhy3qkax3aycf6"))))
(build-system r-build-system)
(native-inputs
`(("r-rcpp" ,r-rcpp)
("pkg-config" ,pkg-config)))
(inputs
- `(("cairo" ,cairo)))
+ `(("cairo" ,cairo)
+ ("zlib" ,zlib)))
(propagated-inputs
`(("r-withr" ,r-withr)))
(home-page "https://cran.r-project.org/web/packages/gdtools")
(define-public r-dbi
(package
(name "r-dbi")
- (version "0.7")
+ (version "0.8")
(source (origin
(method url-fetch)
(uri (cran-uri "DBI" version))
(sha256
(base32
- "04fyrxdpqcygg5wviy637y6lgk64xqjjq31lvv4hwqj5kbaxamr5"))))
+ "16nf8flxr5vdz8yrpprfbzydy3ajixkp9hc8ibd9n7r9nc29waym"))))
(build-system r-build-system)
(home-page "https://github.com/rstats-db/DBI")
(synopsis "R database interface")
(define-public r-bh
(package
(name "r-bh")
- (version "1.65.0-1")
+ (version "1.66.0-1")
(source (origin
(method url-fetch)
(uri (cran-uri "BH" version))
(sha256
(base32
- "0n6byzrvl1w4hjdxz479q4a7w1118f9ckqc4gqydq7lgzs5agfl2"))))
+ "14kab6wp0c27d8x4jqyf065p4bj210s9b67c0bfsfjnp29aypn8p"))))
(build-system r-build-system)
(home-page "https://github.com/eddelbuettel/bh")
(synopsis "R package providing subset of Boost headers")
(define-public r-yaml
(package
(name "r-yaml")
- (version "2.1.16")
+ (version "2.1.17")
(source (origin
(method url-fetch)
(uri (cran-uri "yaml" version))
(sha256
(base32
- "1xlsmqal607w6c9rx86061y1fwpbyd5lqp9bad5n7cc9a0blpnkm"))))
+ "10y6wnv2v8k396far29haqv2s82p4zm04rrsxk183wg19gb51was"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/yaml/")
(synopsis "Methods to convert R data to YAML and back")
(define-public r-knitr
(package
(name "r-knitr")
- (version "1.19")
+ (version "1.20")
(source (origin
(method url-fetch)
(uri (cran-uri "knitr" version))
(sha256
(base32
- "1gyj9bw90h4h9rc9k1iqrnzirm2f8mj45zi8bkjc6rp610vlh63j"))))
+ "1408dm25cxahk2clff8hlajaqdj5v1gs40nm3q6rf0ghd82hj93v"))))
(build-system r-build-system)
(propagated-inputs
`(("r-evaluate" ,r-evaluate)
(define-public r-pryr
(package
(name "r-pryr")
- (version "0.1.3")
+ (version "0.1.4")
(source (origin
(method url-fetch)
(uri (cran-uri "pryr" version))
(sha256
(base32
- "1b1rcywq9sqzgjsnh3ynnx16gp41n94kkzfalm3y4kyy3ls8ikba"))))
+ "06vj5xl9x37kbd3l5bw7sbgfdnp37spvrjrn976rxi04clqk966k"))))
(build-system r-build-system)
(propagated-inputs
`(("r-stringr" ,r-stringr)
(define-public r-rlang
(package
(name "r-rlang")
- (version "0.1.6")
+ (version "0.2.0")
(source (origin
(method url-fetch)
(uri (cran-uri "rlang" version))
(sha256
(base32
- "1x62assn8m7cd0q75r809gxsdqmxmd2br1xz53ykzhrfz3j768kp"))))
+ "0f87fhw5pj6s2zjdxnpnd7pwn78czdz71b0xhm5adqg1p38sfwj8"))))
(build-system r-build-system)
(home-page "http://rlang.tidyverse.org")
(synopsis "Functions for base types, core R and Tidyverse features")
(define-public r-dbplyr
(package
(name "r-dbplyr")
- (version "1.2.0")
+ (version "1.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "dbplyr" version))
(sha256
(base32
- "17br61mhssi2pm6v8604f89ykglng3qp9ymfzmhw10cary6zm982"))))
+ "1nwrls9c3kc9q7405jp6b9sh23642sz13yw55iikgw134shffj5k"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
(define-public r-openssl
(package
(name "r-openssl")
- (version "1.0")
+ (version "1.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "openssl" version))
(sha256
(base32
- "1j8smqrb79lnaf2n9icksjiy641fcazsbkhmgg916s3nnyjngjz3"))))
+ "1qyql5gpwf88bkm1qarjhbqbq4hn6w0d8j4pxb5x7i96is30ap30"))))
(build-system r-build-system)
(inputs
`(("libressl" ,libressl)))
(define-public r-devtools
(package
(name "r-devtools")
- (version "1.13.4")
+ (version "1.13.5")
(source (origin
(method url-fetch)
(uri (cran-uri "devtools" version))
(sha256
(base32
- "1az1qf50vyhm4w6k2a6wqw3pqc8jv2iqzdhs36cg079hx9swm0mb"))))
+ "1x3wsk7dh3yakii61kbfvafx9yz66h40ixiwfkf03dnp2n24hngs"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
(define-public r-rcpparmadillo
(package
(name "r-rcpparmadillo")
- (version "0.8.300.1.0")
+ (version "0.8.400.0.0")
(source (origin
(method url-fetch)
(uri (cran-uri "RcppArmadillo" version))
(sha256
(base32
- "0p6cbnwxgzigf7n5qhqvxdr3nd3pq3c2qq6pskqz7avzf813fy83"))))
+ "11y2ksf46zw6fcz0kk70szyfn7qqxwwd33xylrxvnyb7ldmbc5yr"))))
(properties `((upstream-name . "RcppArmadillo")))
(build-system r-build-system)
(native-inputs
(define-public r-rmarkdown
(package
(name "r-rmarkdown")
- (version "1.8")
+ (version "1.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "rmarkdown" version))
(sha256
(base32
- "0q1y1qx87xp6vf9h7mfl77rqhmd01xl53l9ap9qj99bfvpabb572"))))
+ "0wq6kbhrkv3fhcy4hg5yyv9gdvf8gr4nsjwdifs4ih8lnn0dmdyb"))))
(properties `((upstream-name . "rmarkdown")))
(build-system r-build-system)
(propagated-inputs
(define-public r-xml
(package
(name "r-xml")
- (version "3.98-1.9")
+ (version "3.98-1.10")
(source (origin
(method url-fetch)
(uri (cran-uri "XML" version))
(sha256
(base32
- "1hzkdkgs0nzmfg9wm7kyh1j9i0i2g7925whzlihqvg9grdlh3dx3"))))
+ "1faza9bbllp67lf1yv1sllxc3iv8llz52m9diazhq322iqbh97m1"))))
(properties
`((upstream-name . "XML")))
(build-system r-build-system)
(inputs
- `(("libxml2" ,libxml2)))
+ `(("libxml2" ,libxml2)
+ ("zlib" ,zlib)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
(home-page "http://www.omegahat.org/RSXML")
(synopsis "Tools for parsing and generating XML within R")
(description
"0vql32np716dpd0kjn7s7wgawd02ysgp2a5il4kb19nlw661ii3x"))))
(properties `((upstream-name . "lambda.r")))
(build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'check 'delete-test-log
+ ;; The test report contains time stamps and is not important for
+ ;; the installed package.
+ (lambda* (#:key outputs #:allow-other-keys)
+ (delete-file-recursively
+ (string-append (assoc-ref outputs "out")
+ "/site-library/lambda.r/unitTests"))
+ #t)))))
+ (native-inputs
+ `(("r-runit" ,r-runit)))
(home-page "https://cran.r-project.org/web/packages/lambda.r")
(synopsis "Functional programming extension for R")
(description
(define-public r-nmf
(package
(name "r-nmf")
- (version "0.20.6")
+ (version "0.21.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "NMF" version))
(sha256
(base32
- "0mmh9bz0zjwd8h9jplz4rq3g94npaqj8s4px51vcv47csssd9k6z"))))
+ "1qq25n3k5sgh3srlshb3ic6q92s12c1ilqf5cd5anvq6cqfchc1v"))))
(properties `((upstream-name . "NMF")))
(build-system r-build-system)
(propagated-inputs
`(("r-cluster" ,r-cluster)
- ("r-bigmemory" ,r-bigmemory)
- ("r-synchronicity" ,r-synchronicity)
+ ("r-bigmemory" ,r-bigmemory) ; suggested
+ ("r-synchronicity" ,r-synchronicity) ; suggested
("r-colorspace" ,r-colorspace)
("r-digest" ,r-digest)
("r-doparallel" ,r-doparallel)
(define-public r-tidyselect
(package
(name "r-tidyselect")
- (version "0.2.3")
+ (version "0.2.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidyselect" version))
(sha256
(base32
- "0b0w30yq30c7bwpaghp3hp0nncqwcmvrra9j58fhx9jihay3l68c"))))
+ "1592dbzawhd1hpsp9919l4sifyiaaj6xr7lnhsbwa6jwmmb0xcsw"))))
(build-system r-build-system)
(propagated-inputs
`(("r-glue" ,r-glue)
(define-public r-hmisc
(package
(name "r-hmisc")
- (version "4.0-3")
+ (version "4.1-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "Hmisc" version))
(sha256
(base32
- "1a7i7azag6pldgala85d8hh7wnx1shamyiriy4jfc65nxrr2lq8w"))))
+ "160l50ppjs69ipcaya1mlcz29zbn5rmqg91r09dvzzvkvwfb47cr"))))
(properties `((upstream-name . "Hmisc")))
(build-system r-build-system)
(native-inputs
(define-public r-sfsmisc
(package
(name "r-sfsmisc")
- (version "1.1-1")
+ (version "1.1-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "sfsmisc" version))
(sha256
(base32
- "0jzmbywlyzfxs7hlmyd0iynghfc9qp5sa5lnhr73y8r360yv1ahf"))))
+ "0cgq2h11ngkzd6p34k6mqjnvlvc5vj4lnqrl64k05lb391j391w0"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/sfsmisc")
(synopsis "Utilities from \"Seminar fuer Statistik\" ETH Zurich")
(base32
"1xknwk9xlsj027pg0nwiizigcrsc84hdrig0jn0cgcyxj8dabdl6"))))
(build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'make-deterministic
+ (lambda _
+ (substitute* "R/checkReverseDependencies.R"
+ (("tempdir\\(\\)") "\"/tmp\""))
+ #t)))))
(home-page "https://cran.r-project.org/web/packages/gtools")
(synopsis "Various R programming tools")
(description
(define-public r-zoo
(package
(name "r-zoo")
- (version "1.8-0")
+ (version "1.8-1")
(source (origin
(method url-fetch)
(uri (cran-uri "zoo" version))
(sha256
(base32
- "0mqklbx92ifwa0awm7gpm4r9dvwa09p55zjxjnypiqsxy532r4h9"))))
+ "16nc5jnpkf5j9vgq3pzssv7knj30mi055wj7q3sygz3l0d88hgfr"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
(define-public r-pcapp
(package
(name "r-pcapp")
- (version "1.9-72")
+ (version "1.9-73")
(source
(origin
(method url-fetch)
(uri (cran-uri "pcaPP" version))
(sha256
(base32
- "0i2822bv86dpqmk3q17x61nsp3gjjnn4nr8191rwvbiib7xhpgaq"))))
+ "1z2kdf9gfp965xbcd4rg6vf20d1bl443na0qjkpq7gmzpaq6cifa"))))
(properties `((upstream-name . "pcaPP")))
(build-system r-build-system)
(propagated-inputs
(define-public r-fpc
(package
(name "r-fpc")
- (version "2.1-10")
+ (version "2.1-11")
(source
(origin
(method url-fetch)
(uri (cran-uri "fpc" version))
(sha256
(base32
- "15m0p9l9w2v7sl0cnzyg81i2fmx3hrhvr3371544mwn3fpsca5sx"))))
+ "04alsqb5gbhsjg1000d8w52pmpnlwca29r0s12f7n7mdccdv6xar"))))
(build-system r-build-system)
(propagated-inputs
`(("r-class" ,r-class)
(define-public r-vgam
(package
(name "r-vgam")
- (version "1.0-4")
+ (version "1.0-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "VGAM" version))
(sha256
(base32
- "0r59hyp3afmvms890b3v2yyckf8v0qkjf2w11rnqd2zgg1gri0g5"))))
+ "0ik3wyv6jj54bg34z0fzzk4xg0h6x98jqx4q2r7g1f0in0qgbb01"))))
(properties `((upstream-name . "VGAM")))
(build-system r-build-system)
(inputs
(define-public r-pbapply
(package
(name "r-pbapply")
- (version "1.3-3")
+ (version "1.3-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "pbapply" version))
(sha256
(base32
- "0iqhymf65jffh00qf056h1p76xf92bfmij6aymlmgnvn24fv4ybk"))))
+ "0lk5kxac09xzdv6vf7ix6r5bfrm7cnpyr2l5mkd4igpciadszzfd"))))
(build-system r-build-system)
(home-page "https://github.com/psolymos/pbapply")
(synopsis "Adding progress bar to apply functions")
showing the progress is useful e.g. bootstrap.")
(license license:gpl2)))
-(define-public r-fnn
- (package
- (name "r-fnn")
- (version "1.1")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "FNN" version))
- (sha256
- (base32
- "1kncmiaraq1mrykb9fj3fsxswabk3l71fnp1vks0x9aay5xfk8mj"))))
- (properties `((upstream-name . "FNN")))
- (build-system r-build-system)
- (home-page "https://cran.r-project.org/web/packages/FNN")
- (synopsis "Fast nearest neighbor search algorithms and applications")
- (description
- "This package provides cover-tree and kd-tree fast k-nearest neighbor
-search algorithms and related applications including KNN classification,
-regression and information measures.")
- (license license:gpl2+)))
-
(define-public r-minqa
(package
(name "r-minqa")
(define-public r-rcppeigen
(package
(name "r-rcppeigen")
- (version "0.3.3.3.1")
+ (version "0.3.3.4.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "RcppEigen" version))
(sha256
(base32
- "093g2wmqyk86693l0lzh2va8119w3k7rvw5q24p842jdfv5x5z8l"))))
+ "1m6ssq6lvi36ggf26y4hhq996583pxxdb978jnn1x6r9gdb0q0hi"))))
(properties `((upstream-name . "RcppEigen")))
(build-system r-build-system)
(propagated-inputs
(define-public r-quantreg
(package
(name "r-quantreg")
- (version "5.34")
+ (version "5.35")
(source
(origin
(method url-fetch)
(uri (cran-uri "quantreg" version))
(sha256
(base32
- "0bmgfgnmzqwmwwaraliry682yb8kcr396q3rlzrd2qzaa9sgxxh4"))))
+ "18f3qxv1j1bqmq55hzssz8mnp5ww4flhy80rm2v1rk0mmg9paz7m"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
(define-public r-lme4
(package
(name "r-lme4")
- (version "1.1-14")
+ (version "1.1-15")
(source
(origin
(method url-fetch)
(uri (cran-uri "lme4" version))
(sha256
(base32
- "1vars93604q7kyz6y1f8f886l05jkgj8bs78033l2czypvzki5la"))))
+ "0sc6rvhiizxxpkdc3wps200wg3pqc0d89crn29lzm75fk8qdd7vx"))))
(build-system r-build-system)
(native-inputs
`(("r-rcpp" ,r-rcpp)
(define-public r-ranger
(package
(name "r-ranger")
- (version "0.8.0")
+ (version "0.9.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ranger" version))
(sha256
(base32
- "1fdbm879wx3hlng8s4c4f8f2x5yxz57llakcqnpa0lymybidw3vz"))))
+ "1pilj5pxl8jl0gsy9vsyqxqdqfcxzvphbgvrlp4hf7r9mrfw9v0p"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rcpp" ,r-rcpp)
(define-public r-lubridate
(package
(name "r-lubridate")
- (version "1.7.1")
+ (version "1.7.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "lubridate" version))
(sha256
(base32
- "0pzvazzybzvln3y676yims7whsc74g8i7kgf2nsfbxdq5943z349"))))
+ "1pzkqfiahnsdm3zx46asgn8fw43vlxvbh7r4cn70c7ffmxabzzrc"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rcpp" ,r-rcpp)
(define-public r-forcats
(package
(name "r-forcats")
- (version "0.2.0")
+ (version "0.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "forcats" version))
(sha256
(base32
- "1mvwkynvvgz2vi8dyz11x7xrp53kadjawjcja34hwk1d89qf7g5m"))))
+ "0mxn1hng43zdjh1v8shd80hrszrqahcpaqxs1s1sif0qxh84d0cm"))))
(build-system r-build-system)
(propagated-inputs
`(("r-magrittr" ,r-magrittr)
- ("r-tibble" ,r-tibble)))
+ ("r-tibble" ,r-tibble)
+ ("r-rlang" ,r-rlang)))
(home-page "http://forcats.tidyverse.org")
(synopsis "Tools for working with factors")
(description "This package provides helpers for reordering factor
(description "Did you ever wish you could make scatter plots with cat
shaped points? Now you can!")
(license license:asl2.0))))
+
+(define-public r-colorout
+ (package
+ (name "r-colorout")
+ (version "1.2-0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/jalvesaq/colorout/archive/"
+ "v" version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "07vqx5ihgnq4dzn5jnfjfhdm3957v4prvf8vhnb3cwvlly4l7p9v"))))
+ (build-system r-build-system)
+ (home-page "https://github.com/jalvesaq/colorout")
+ (synopsis "Colorize output in the R REPL")
+ (description "@code{colorout} is an R package that colorizes R output when
+running in terminal emulator.
+
+R STDOUT is parsed and numbers, negative numbers, dates in the standard
+format, strings, and R constants are identified and wrapped by special ANSI
+scape codes that are interpreted by terminal emulators as commands to colorize
+the output. R STDERR is also parsed to identify the expressions warning and
+error and their translations to many languages. If these expressions are
+found, the output is colorized accordingly; otherwise, it is colorized as
+STDERROR (blue, by default).
+
+You can customize the colors according to your taste, guided by the color
+table made by the command @code{show256Colors()}. You can also set the colors
+to any arbitrary string. In this case, it is up to you to set valid values.")
+ (license license:gpl3+)))
+
+(define-public java-jdistlib
+ (package
+ (name "java-jdistlib")
+ (version "0.4.5")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "mirror://sourceforge/jdistlib/jdistlib-"
+ version "-src.jar"))
+ (sha256
+ (base32
+ "1pkj8aahw9ydr1isbaqrkd05nvq98ik5jwwhf3yf3rky3z869v11"))))
+ (build-system ant-build-system)
+ (arguments
+ `(#:jar-name "jdistlib.jar"
+ #:jdk ,icedtea-8
+ #:tests? #f ; no dedicated test directory
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-broken-encoding
+ (lambda _
+ (with-fluids ((%default-port-encoding "ISO-8859-1"))
+ (substitute* "src/jdistlib/Beta.java"
+ (("Scheff.+-Tukey") "Scheffe-Tukey")))
+ #t)))))
+ (propagated-inputs
+ `(("java-jtransforms" ,java-jtransforms)))
+ (native-inputs
+ `(("java-junit" ,java-junit)))
+ (home-page "http://jdistlib.sourceforge.net/")
+ (synopsis "Java library of statistical distributions")
+ (description "JDistlib is the Java Statistical Distribution Library, a
+Java package that provides routines for various statistical distributions.")
+ ;; The files that were translated from R code are under GPLv2+; some files
+ ;; are under the GPLv3, which is a mistake. The author confirmed in an
+ ;; email that this whole project should be under GPLv2+.
+ (license license:gpl2+)))
HCoop / jackhill / guix / guix.git / blobdiff