gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor).

[jackhill/guix/guix.git] / gnu / packages / bioconductor.scm

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 936f521..24504d0 100644 (file)
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -33,6 +33,38 @@
   #:use-module (gnu packages statistics)
   #:use-module (gnu packages web))
 
+(define-public r-bsgenome-celegans-ucsc-ce6
+  (package
+    (name "r-bsgenome-celegans-ucsc-ce6")
+    (version "1.4.0")
+    (source (origin
+              (method url-fetch)
+              ;; We cannot use bioconductor-uri here because this tarball is
+              ;; located under "data/annotation/" instead of "bioc/".
+              (uri (string-append "https://www.bioconductor.org/packages/"
+                                  "release/data/annotation/src/contrib/"
+                                  "BSgenome.Celegans.UCSC.ce6_"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "0mqzb353xv2c3m3vkb315dkmnxkgczp7ndnknyhpgjlybyf715v9"))))
+    (properties
+     `((upstream-name . "BSgenome.Celegans.UCSC.ce6")))
+    (build-system r-build-system)
+    ;; As this package provides little more than a very large data file it
+    ;; doesn't make sense to build substitutes.
+    (arguments `(#:substitutable? #f))
+    (propagated-inputs
+     `(("r-bsgenome" ,r-bsgenome)))
+    (home-page
+     "https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce6/")
+    (synopsis "Full genome sequences for Worm")
+    (description
+     "This package provides full genome sequences for Caenorhabditis
+elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings
+objects.")
+    (license license:artistic2.0)))
+
 (define-public r-bsgenome-dmelanogaster-ucsc-dm6
   (package
     (name "r-bsgenome-dmelanogaster-ucsc-dm6")