;;; Copyright © 2020 Magali Lemes <magalilemes00@gmail.com>
;;; Copyright © 2020 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2020 Aniket Patil <aniket112.patil@gmail.com>
+;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
;;;
;;; This file is part of GNU Guix.
;;;
(define-public r-diffobj
(package
(name "r-diffobj")
- (version "0.3.3")
+ (version "0.3.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "diffobj" version))
(sha256
(base32
- "1x3d5sk8mk0s2d7dq8wxi1zv6krlx33n22ls2jwnb58b8xrmakj1"))))
+ "1z4yhfasjpi9rxl1lh9bny7yvs947a6hhc768azc1wwad748mk9q"))))
(properties `((upstream-name . "diffobj")))
(build-system r-build-system)
(propagated-inputs `(("r-crayon" ,r-crayon)))
(define-public r-zoo
(package
(name "r-zoo")
- (version "1.8-8")
+ (version "1.8-9")
(source (origin
(method url-fetch)
(uri (cran-uri "zoo" version))
(sha256
(base32
- "1rrw431jwaxd9xljp73f15rhcxvwc0xlyrmr0ghi5fj7a03c932f"))))
+ "18vjywalpgzqyk66gajb8x1yp8avdaaf11ykynld9fd8cy82bgmp"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
(define-public r-ggpmisc
(package
(name "r-ggpmisc")
- (version "0.3.8-1")
+ (version "0.3.9")
(source (origin
(method url-fetch)
(uri (cran-uri "ggpmisc" version))
(sha256
(base32
- "0kcrh73nwha52vl6z35wafmqs5lsdh2p4nqvi2ir70cv1k5y46zf"))))
+ "0nb0lpwqph9334s9sq77mk3nd22icy9d9hywz4awhf6nvp5rcc2v"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
(define-public r-oenb
(package
(name "r-oenb")
- (version "0.0.1")
+ (version "0.0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "oenb" version))
(sha256
(base32
- "1x1jlqp6r27c4gb7wafzpmh5rq6yq61a2d395r5lsmv2g5jb4biz"))))
+ "1jgxw7ycx2lcdzglg9nix8k08fs4r6i5jdsjzrd6w1dg6smsinl5"))))
(properties `((upstream-name . "oenb")))
(build-system r-build-system)
(propagated-inputs
(define-public r-rvest
(package
(name "r-rvest")
- (version "0.3.6")
+ (version "1.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "rvest" version))
(sha256
- (base32 "1yh2p429a0zr8pqmlw5rzf6m797j20j5w6xwxlqq0wrdbnif6bka"))))
+ (base32 "04spcv6nxlmx5bxncq0vybfqrs8jgjamzyrn6wmkdcwii8jvyn53"))))
(build-system r-build-system)
(propagated-inputs
`(("r-httr" ,r-httr)
+ ("r-lifecycle" ,r-lifecycle)
("r-magrittr" ,r-magrittr)
+ ("r-rlang" ,r-rlang)
("r-selectr" ,r-selectr)
+ ("r-tibble" ,r-tibble)
("r-xml2" ,r-xml2)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(define-public r-reprex
(package
(name "r-reprex")
- (version "1.0.0")
+ (version "2.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "reprex" version))
(sha256
(base32
- "07nzx0fdl48jw95ipx17ql0l13q60yl3rjrkj1m375wrc7h1v5nx"))))
+ "1lcnxczy28n4g3rvph09va7svcznfyqa7zdggklqb924qvy7flwh"))))
(build-system r-build-system)
(propagated-inputs
`(("r-callr" ,r-callr)
("r-knitr" ,r-knitr)
("r-rlang" ,r-rlang)
("r-rmarkdown" ,r-rmarkdown)
+ ("r-rstudioapi" ,r-rstudioapi)
("r-withr" ,r-withr)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(define-public r-callr
(package
(name "r-callr")
- (version "3.5.1")
+ (version "3.6.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "callr" version))
(sha256
(base32
- "15l6ppsxdadlnl4fk0f8bvf327n8izk96px5d08m1ay9iij8qcyf"))))
+ "050s7l1ipi6snbj6xnk052l6acycnxjyzv84026adw5x8kki0yz6"))))
(build-system r-build-system)
(propagated-inputs
`(("r-r6" ,r-r6)
bindings that call a C++ function.")
(license license:expat)))
-(define-public r-bisquerna
- (package
- (name "r-bisquerna")
- (version "1.0.4")
- (source (origin
- (method url-fetch)
- (uri (cran-uri "BisqueRNA" version))
- (sha256
- (base32
- "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2"))))
- (properties `((upstream-name . "BisqueRNA")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-limsolve" ,r-limsolve)))
- (home-page "https://www.biorxiv.org/content/10.1101/669911v1")
- (synopsis "Decomposition of bulk expression with single-cell sequencing")
- (description "This package provides tools to accurately estimate cell type
-abundances from heterogeneous bulk expression. A reference-based method
-utilizes single-cell information to generate a signature matrix and
-transformation of bulk expression for accurate regression based estimates.
-A marker-based method utilizes known cell-specific marker genes to measure
-relative abundances across samples.")
- (license license:gpl3)))
-
(define-public r-auc
(package
(name "r-auc")
(uri (cran-uri "SuppDists" version))
(sha256
(base32
- "01j6p94m1g363nph2158fq2rmd6z3h5dvcv6aidh2d6syw131xak"))))
+ "1i3iq12a5x5k49ac01mikzcrrq9gc148xq3m08h4xm07bha6f2v8"))))
(properties `((upstream-name . "SuppDists")))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/SuppDists")
(define-public r-lava
(package
(name "r-lava")
- (version "1.6.8.1")
+ (version "1.6.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "lava" version))
(sha256
(base32
- "1yiz8y3jhxkszgz9m9fialp9r27hy97xh0imfvs8ziv7dk43y93d"))))
+ "07difbrz8zmvdyns63958v0zw4hyv48956mcww8zh7064a564k83"))))
(build-system r-build-system)
(propagated-inputs
`(("r-numderiv" ,r-numderiv)
(define-public r-ipred
(package
(name "r-ipred")
- (version "0.9-10")
+ (version "0.9-11")
(source
(origin
(method url-fetch)
(uri (cran-uri "ipred" version))
(sha256
(base32
- "0p9cd2v47h71jbz8q0z6xykkaqpcp0mkpsfmd2bn961n1hfgpa63"))))
+ "04hfg27c72v0fz4091w3rgbc2vd7g6yl78y9plvsvh0vjlx8ymmp"))))
(build-system r-build-system)
(propagated-inputs
`(("r-class" ,r-class)
(define-public r-psych
(package
(name "r-psych")
- (version "2.0.12")
+ (version "2.1.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "psych" version))
(sha256
(base32
- "0k5dw5nb7kx7f21b0z01dry99qcpnk7iaicv7xq9d35wv2hx8wca"))))
+ "1ibh1ivr280wpmk3qjgm715dk79wx0ikjl9jjjcqs03q6vz4wmdx"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)
("r-mnormt" ,r-mnormt)
("r-nlme" ,r-nlme)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://cran.r-project.org/web/packages/psych/")
(synopsis "Procedures for psychological, psychometric, and personality research")
(description
(define-public r-broom
(package
(name "r-broom")
- (version "0.7.5")
+ (version "0.7.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "broom" version))
(sha256
(base32
- "1qjyl5b100bsakm48w1vi3819lkpys7vb86n1sv9h4y2wr1c4jmw"))))
+ "1ljcl8mh0yqxw3qxzar482qwbxbcaim1x6y1wm82ws12pfdw0j8n"))))
(build-system r-build-system)
(propagated-inputs
`(("r-backports" ,r-backports)
(define-public r-vioplot
(package
(name "r-vioplot")
- (version "0.3.5")
+ (version "0.3.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "vioplot" version))
(sha256
(base32
- "0aiy615kn9lpr2cs757g3pklg81n01yhqh0wrwv111fn3cy86r0v"))))
+ "15vmrm9gwdhfg8mnq8rsg7m59kzc9h53cv96am4ds1dkm56w4n6p"))))
(build-system r-build-system)
(propagated-inputs
`(("r-sm" ,r-sm)
(define-public r-cli
(package
(name "r-cli")
- (version "2.3.1")
+ (version "2.4.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "cli" version))
(sha256
(base32
- "1jh64ixn6mg2ap1sx4azrxkjnlsyjbfxyc9zjkx8m9dlakgf4v2i"))))
+ "0l1s9yv23bc7mm0hfdlamgz4wjfrisv8aylr65ihjs98jsynrkg3"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-assertthat" ,r-assertthat)
- ("r-glue" ,r-glue)))
+ `(("r-glue" ,r-glue)))
(home-page "https://github.com/r-lib/cli#readme")
(synopsis "Helpers for developing command line interfaces")
(description "This package provides a suite of tools designed to build
(define-public r-processx
(package
(name "r-processx")
- (version "3.4.5")
+ (version "3.5.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "processx" version))
(sha256
- (base32 "055v2gdrgqsfy8s672wsq79bqr44b4jjmcbqivx4p2d6lqx10s73"))))
+ (base32 "1z7zag7g041xlhzhkdfl33y2phc877h1pwj9k69p69b967qi6p6k"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ps" ,r-ps)
(define-public r-xfun
(package
(name "r-xfun")
- (version "0.21")
+ (version "0.22")
(source
(origin
(method url-fetch)
(uri (cran-uri "xfun" version))
(sha256
- (base32 "18qjs81fn8q2d2drcan8gpgvrbgxgd0b659c92z19kg2h4c1g3k4"))))
+ (base32 "0ix3p0iw2c60whn5mvsflh0vhm4yixhw4s9d9v4023qhp077nw9y"))))
(build-system r-build-system)
;; knitr itself depends on xfun
#;
(define-public r-utf8
(package
(name "r-utf8")
- (version "1.1.4")
+ (version "1.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "utf8" version))
(sha256
(base32
- "0m0ywg8k3blfiahxvh1i4zn9dksrlc937d2lbza5fc38zjnrrnpn"))))
+ "1yw7vjn3gpkqddc91rbfh4kk0zmn2kp0jycrd3066sissh01jhdk"))))
(build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/patperry/r-utf8")
(synopsis "Unicode text processing")
(description
(define-public r-vctrs
(package
(name "r-vctrs")
- (version "0.3.6")
+ (version "0.3.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "vctrs" version))
(sha256
(base32
- "09ddxgzyah7lw42hn6n8fynsixf43s10jamsf94d2aidky63czfz"))))
+ "03hyxk3x635xfdn2x707gygdb2xk0cayl1nl44zib9bwqyyb7nas"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-digest" ,r-digest)
- ("r-ellipsis" ,r-ellipsis)
+ `(("r-ellipsis" ,r-ellipsis)
("r-glue" ,r-glue)
("r-rlang" ,r-rlang)))
(native-inputs
(define-public r-tinytex
(package
(name "r-tinytex")
- (version "0.30")
+ (version "0.31")
(source
(origin
(method url-fetch)
(uri (cran-uri "tinytex" version))
(sha256
(base32
- "0dk6mpszwh1m65b0wfwjlcvpzywmasf6p31niqiq53wnd92my0gw"))))
+ "04a3ncaxix30n9m73slpsn1idxv7j1f7fy3nhxpvkk514x9rgg0p"))))
(build-system r-build-system)
(propagated-inputs
`(("r-xfun" ,r-xfun)))
(define-public r-sapa
(package
(name "r-sapa")
- (version "2.0-2")
+ (version "2.0-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "sapa" version))
(sha256
(base32
- "056xlh14dnzq4x7sbp7ff2k61jxy7110a742b502vz549qfrr5ds"))))
+ "0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ifultools" ,r-ifultools)
(define-public r-arules
(package
(name "r-arules")
- (version "1.6-6")
+ (version "1.6-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "arules" version))
(sha256
(base32
- "1pk3jjizn2m5rwi7qkdkbq9f07acgpy0qdzzqmx0agg47cwahlkm"))))
+ "0m80kndfbannw8h53nqdd5wl8h33q2z259aa1cp1nwadaxf9fc1q"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)))
(define-public r-maptools
(package
(name "r-maptools")
- (version "1.0-2")
+ (version "1.1-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "maptools" version))
(sha256
(base32
- "0jgf3wg47jdnznxb3ncv4is9ackwviy4lzcyggqwzw3wh6jnvb6s"))))
+ "0pn4gwh2rl6pfh2vbc7ln86kzlg22cfpd02z95j7zpjidz2mva8l"))))
(build-system r-build-system)
(propagated-inputs
`(("r-foreign" ,r-foreign)
(define-public r-rastervis
(package
(name "r-rastervis")
- (version "0.50")
+ (version "0.50.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "rasterVis" version))
(sha256
(base32
- "0m7fjd53apxim0d0rjnyzc28vmfcg4spcrn0zbnk8llillxji1hi"))))
+ "1fkmyllydnmk3j2cmgf86r91wyxf2kh573x8bkck7wgkfniw4h7w"))))
(properties `((upstream-name . "rasterVis")))
(build-system r-build-system)
(propagated-inputs
(define-public r-renv
(package
(name "r-renv")
- (version "0.13.0")
+ (version "0.13.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "renv" version))
(sha256
(base32
- "16n2dz9jibc03f7q1wrzxss6l5jmaks7m2lnli9dz9anvcmxbdia"))))
+ "0jlsf6vfvqhr4i35xy3xf1ixkfillivzy3wbpl6ca9vyjpnhiwj1"))))
(properties `((upstream-name . "renv")))
(build-system r-build-system)
(native-inputs
(define-public r-rbibutils
(package
(name "r-rbibutils")
- (version "2.0")
+ (version "2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "rbibutils" version))
(sha256
(base32
- "1vfg2188i4dyhrmvnwpsh2la8qkd4wkryz2fpj4cppi1wfz3ml83"))))
+ "13phw0dk3p3s1z45ff7dbqnn27zws1209mp3d4763zh7xnsdsl44"))))
(properties `((upstream-name . "rbibutils")))
(build-system r-build-system)
(home-page "https://geobosh.github.io/rbibutils/")
(define-public r-officer
(package
(name "r-officer")
- (version "0.3.17")
+ (version "0.3.18")
(source
(origin
(method url-fetch)
(uri (cran-uri "officer" version))
(sha256
(base32
- "1apg0dh1zfhrqcbbmm8318l40gyjbqc2l9sdvwxx7qi8mzc1mqvw"))))
+ "1j3bv4j8x5ijj0j447vpdsk4p8pl3ncwdwnns6n3plfrqgsf3vsg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-r6" ,r-r6)
(define-public r-insight
(package
(name "r-insight")
- (version "0.13.1")
+ (version "0.13.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "insight" version))
(sha256
(base32
- "1la4yxzfl9fnknamnaziil6gvpdzl78z16lfzis9jgzg8r9q0y5l"))))
+ "03b7kd17h25mi1si40ibcp3jpasyqpj51mr8js0ywywyfw7909j1"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(define-public r-flextable
(package
(name "r-flextable")
- (version "0.6.3")
+ (version "0.6.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "flextable" version))
(sha256
(base32
- "0as80m19lvajc0vzllq9d9p63zglsm2ph7vdfg3jgk90jp8j76dg"))))
+ "1ykjfnqhn8nd9f3l4jj8hf1bbjjckkna3p7fdsg0a73c05a17yma"))))
(build-system r-build-system)
(propagated-inputs
`(("r-base64enc" ,r-base64enc)
(define-public r-blockfest
(package
(name "r-blockfest")
- (version "1.8")
+ (version "2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "BlockFeST" version))
(sha256
(base32
- "12cbrmgqszlj729zrn9d1d7drbr0iay43knnmrzcxs6v7lfszsx5"))))
+ "1fcl3yc1cf09znqbj787d3fd2kl5rp63la7pxawsgmap7nxwkp65"))))
(properties `((upstream-name . "BlockFeST")))
(build-system r-build-system)
(propagated-inputs `(("r-basix" ,r-basix)))
(define-public r-magick
(package
(name "r-magick")
- (version "2.6.0")
+ (version "2.7.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "magick" version))
(sha256
(base32
- "1k4fqhxh2ppynl56fs044wpn4wk6gbv6lwp2x4x7j67zwcv56n36"))))
+ "16svy84dq25g69axqgympsrh8dzssa1w3zz08zc8m6nprr3jqwqf"))))
(build-system r-build-system)
(inputs
`(("imagemagick" ,imagemagick)
(define-public r-emmeans
(package
(name "r-emmeans")
- (version "1.5.4")
+ (version "1.5.5-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "emmeans" version))
(sha256
(base32
- "1rbh3ls23fazrwpsam5llk3kqdzz2zvsms3i4f1cgn34ky3w8361"))))
+ "0l5dd71ihhs7zy6ygniy07iisgy7a1ai1w41hqf84swb0j3cl6iz"))))
(build-system r-build-system)
(propagated-inputs
`(("r-estimability" ,r-estimability)
(define-public r-ggeffects
(package
(name "r-ggeffects")
- (version "1.0.1")
+ (version "1.0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggeffects" version))
(sha256
(base32
- "1c5rvycaqp7zp1j6j17c84v8nlpi0w7bhfxmcha4n37m0snk1kgy"))))
+ "0qh8x8yi8gkb5x7zfxmb1c689k7bhc1f5947yymny34j7xdsb9s8"))))
(build-system r-build-system)
(propagated-inputs
`(("r-insight" ,r-insight)
(define-public r-effectsize
(package
(name "r-effectsize")
- (version "0.4.3")
+ (version "0.4.4-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "effectsize" version))
(sha256
(base32
- "1hcrnax9wf0nwsb8nv15rxw8yy8w5dak16dw3w5bxi8xnf56lkz2"))))
+ "02rwf3lxnzgc8yh0wridsc6lqr9s6v0cqzbk4biwnr494rvs46zb"))))
(properties `((upstream-name . "effectsize")))
(build-system r-build-system)
(propagated-inputs
(define-public r-gh
(package
(name "r-gh")
- (version "1.2.0")
+ (version "1.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "gh" version))
(sha256
(base32
- "1zvy3ylxvni10lhvmbm9h14mg4wlsbdbzbzviwf28jxss8749219"))))
+ "16xa1qb1r28f8yc6ybjrxiq2zigxj886dp9k29jpsn5091xbzkq0"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cli" ,r-cli)
(define-public r-gert
(package
(name "r-gert")
- (version "1.2.0")
+ (version "1.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "gert" version))
(sha256
(base32
- "0ag2ia6cfb5drf3517lg5nhik1w0nv09a75wdy5jdciws1qra3d6"))))
+ "1fh72p92wj83yv1ch77jms6k1gjqfji8cmgw23vpxd0p8l9jj4h7"))))
(properties `((upstream-name . "gert")))
(build-system r-build-system)
(inputs
(define-public r-remotes
(package
(name "r-remotes")
- (version "2.2.0")
+ (version "2.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "remotes" version))
(sha256
(base32
- "1f1kdw9j1wald3fs8b3n68x1kljy07j60g3aw1aarx26ikyk9whj"))))
+ "0f35648bdxhvplcfj80r4hfj5w21f1s01kcz6b29d098c1mnfzb7"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(define-public r-summarytools
(package
(name "r-summarytools")
- (version "0.9.8")
+ (version "0.9.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "summarytools" version))
(sha256
(base32
- "0n7rad6bkfn9cb99wbfzbwl5qzch48r0gafhddfcqvyh4fbn2k0j"))))
+ "0ig7vgjvldbndwhky1bsi38zifr9ji8xvvfqbfffplac08llvrbr"))))
(build-system r-build-system)
(propagated-inputs
`(("r-base64enc" ,r-base64enc)
(define-public r-biocmanager
(package
(name "r-biocmanager")
- (version "1.30.10")
+ (version "1.30.12")
(source
(origin
(method url-fetch)
(uri (cran-uri "BiocManager" version))
(sha256
- (base32 "03n9s2vf7vgpgb5alpxwamf9xfkn32cbzngwyn6spq1bnh9a9dzk"))))
+ (base32 "0c2anza01pc36manj3cvycbq8p57qpq18dsimk3y3gpks70hhqf3"))))
(properties `((upstream-name . "BiocManager")))
(build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://cran.r-project.org/web/packages/BiocManager/")
(synopsis "Access the Bioconductor project package repository")
(description
(define-public r-tiff
(package
(name "r-tiff")
- (version "0.1-7")
+ (version "0.1-8")
(source
(origin
(method url-fetch)
(uri (cran-uri "tiff" version))
(sha256
(base32
- "101n6x70fr1dhcwx53g3s8q1j4wh93y0388v1s1316f8558rxqxh"))))
+ "18m17g5q3nz4v4wrqxnb129b1j02873g2vknddczkklf1pvq4x2b"))))
(build-system r-build-system)
(inputs
`(("libtiff" ,libtiff)
("libjpeg" ,libjpeg-turbo)
("zlib" ,zlib)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
(home-page "https://www.rforge.net/tiff/")
(synopsis "Read and write TIFF images")
(description
(define-public r-gargle
(package
(name "r-gargle")
- (version "1.0.0")
+ (version "1.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "gargle" version))
(sha256
(base32
- "0hsqn4hf935wn6vk2pwym7la4sdvy271y4cashp38pg4hkpg9zph"))))
+ "03y29dzz54bw9px5k8a72vmc000lcyrkc5l0izkqcciyi9ijkr3w"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-fs" ,r-fs)
+ `(("r-cli" ,r-cli)
+ ("r-fs" ,r-fs)
("r-glue" ,r-glue)
("r-httr" ,r-httr)
("r-jsonlite" ,r-jsonlite)
+ ("r-rappdirs" ,r-rappdirs)
("r-rlang" ,r-rlang)
+ ("r-rstudioapi" ,r-rstudioapi)
("r-withr" ,r-withr)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(define-public r-rmpfr
(package
(name "r-rmpfr")
- (version "0.8-2")
+ (version "0.8-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "Rmpfr" version))
(sha256
(base32
- "007pc7fpzl2mcg3qxa2vfjip6m2dr314qjsnybkj3kdj70bszxkl"))))
+ "1m9wwwch9wg886147brr2zfih65yfdfs3vmfvim1w6jykycasc9a"))))
(properties `((upstream-name . "Rmpfr")))
(build-system r-build-system)
(inputs
(define-public r-parallelly
(package
(name "r-parallelly")
- (version "1.23.0")
+ (version "1.24.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "parallelly" version))
(sha256
(base32
- "025whcz55wj9jd73dalkbxh4l2331mqn758glr6hlf472lwf4v1p"))))
+ "1x04pxcyyzmg1rl9mcd7mmxglzmxgy40fmbwpy7vf5y7z15rzrp6"))))
(properties `((upstream-name . "parallelly")))
(build-system r-build-system)
(home-page "https://github.com/HenrikBengtsson/parallelly")
(define-public r-lavaan
(package
(name "r-lavaan")
- (version "0.6-7")
+ (version "0.6-8")
(source
(origin
(method url-fetch)
(uri (cran-uri "lavaan" version))
(sha256
(base32
- "0ks62wrwghbm1brzmqvr92h5n1295dpc87m1g3xrfx0mkdaqdcdk"))))
+ "18l49f1v7nrngwra4v983ic8w1d4w23ws8xf36337dq0j6809qj0"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mass" ,r-mass)
(define-public r-units
(package
(name "r-units")
- (version "0.7-0")
+ (version "0.7-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "units" version))
(sha256
(base32
- "0kwfcrrbcwl7s50n1wp33vswqzmprh91clvakbd1jpznqpg5m3js"))))
+ "0wwndzjjgqj795xvx1jwa86nwd8adfiwj0pn15yyzzk9baky2axw"))))
(build-system r-build-system)
(inputs
`(("udunits" ,udunits)))
(define-public r-sf
(package
(name "r-sf")
- (version "0.9-7")
+ (version "0.9-8")
(source
(origin
(method url-fetch)
(uri (cran-uri "sf" version))
(sha256
(base32
- "175fmnnw11fjhfgjv9sn9b0jfjcqbybpgwsvv99d5yddigvw5jja"))))
+ "096gg2hbynn6mv3w8n69x987fklg5rrgd0d4nbqaw7vhg1jhlmqi"))))
(build-system r-build-system)
(inputs
`(("gdal" ,gdal)
(define-public r-spdep
(package
(name "r-spdep")
- (version "1.1-5")
+ (version "1.1-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "spdep" version))
(sha256
(base32
- "0pbd7wrg5v44p2yxsjp774lpyzap3madir5mn5p3ix7ibk7ldjs7"))))
+ "0sg417d95paww625663lgmk6jwhs88djqzc96gbs1hxazlf77qb1"))))
(build-system r-build-system)
(propagated-inputs
`(("r-boot" ,r-boot)
(define-public r-rms
(package
(name "r-rms")
- (version "6.1-1")
+ (version "6.2-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "rms" version))
(sha256
- (base32 "1zgfd60lzbakcv7x0i5k3lkw3s0xx5bzssjgangna5lq2j17cdli"))))
+ (base32 "1di4xvsx0rwkr77nfqiysbg4qf699199xqil70i39d4zwfzqrm8h"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cluster" ,r-cluster)
(define-public r-tweenr
(package
(name "r-tweenr")
- (version "1.0.1")
+ (version "1.0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "tweenr" version))
(sha256
(base32
- "0sq90pbln6lkc2q3zflhkxxwpqdw5dd7igrxhdnlynkdrmi83mpg"))))
+ "17znizh4yabh2zs9mzyr0sl6p0pw49961i61br7cl1b7v9sza18q"))))
(build-system r-build-system)
(propagated-inputs
`(("r-farver" ,r-farver)
layer by layer.")
(license license:gpl3)))
+(define-public r-gkmsvm
+ (package
+ (name "r-gkmsvm")
+ (version "0.81.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "gkmSVM" version))
+ (sha256
+ (base32
+ "119g5rhc7ffyviz04r04aj5z1g6abnj3ddd01g7db505sdr6lapj"))))
+ (properties `((upstream-name . "gkmSVM")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-kernlab" ,r-kernlab)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rocr" ,r-rocr)
+ ("r-seqinr" ,r-seqinr)))
+ (home-page "https://cran.r-project.org/web/packages/gkmSVM")
+ (synopsis "Gapped-kmer support vector machine")
+ (description
+ "This R package provides tools for training gapped-kmer SVM classifiers
+for DNA and protein sequences. This package supports several sequence
+kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
+ (license license:gpl2+)))
+
(define-public r-varselrf
(package
(name "r-varselrf")
(define-public r-styler
(package
(name "r-styler")
- (version "1.3.2")
+ (version "1.4.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "styler" version))
(sha256
(base32
- "1waglhsy2c53qjgd2qhlzda3z0lbzbwx9fkrfhac41y6h91mgkrz"))))
+ "10fj4cnazicb2z9djbv5pszcmrf7wbzagbjvksffqpdc5vbbbw5x"))))
(build-system r-build-system)
(propagated-inputs
`(("r-backports" ,r-backports)
("r-tibble" ,r-tibble)
("r-withr" ,r-withr)
("r-xfun" ,r-xfun)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/r-lib/styler")
(synopsis "Non-invasive pretty printing of R code")
(description
(define-public r-dae
(package
(name "r-dae")
- (version "3.1-32")
+ (version "3.1-37")
(source
(origin
(method url-fetch)
(uri (cran-uri "dae" version))
(sha256
(base32
- "126w1lb9pz8mb2ajl2vz5dj798nbifp0dypnzfgcwixif5g5bpqi"))))
+ "102fgbdpn7yvm1zj180cv4sr1096sz35d4gndsv7w9kriqyi1c1l"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
(define-public r-dalex
(package
(name "r-dalex")
- (version "2.1.1")
+ (version "2.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "DALEX" version))
(sha256
(base32
- "1dnqsml94s648w8swsrq8spddnd4mj5pl3q6xxr917w6a1jxgyfz"))))
+ "1qnjbhilv4jfmwqxfi9xc5ysrh8gr84a2a5imjfci7d1n3zcnryn"))))
(properties `((upstream-name . "DALEX")))
(build-system r-build-system)
(propagated-inputs
(define-public r-gamlss-data
(package
(name "r-gamlss-data")
- (version "5.1-4")
+ (version "6.0-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "gamlss.data" version))
(sha256
(base32
- "1dgfspbmps6ipzcmw681wjdp320nm50dwsxafgrcwxndqgc7fdqd"))))
+ "1cjb2n5i5mnhmb5qbqycdbfg65j7nxb9s74yihqs9kpa39byrzcq"))))
(properties `((upstream-name . "gamlss.data")))
(build-system r-build-system)
(home-page "http://www.gamlss.org/")
(define-public r-gamlss
(package
(name "r-gamlss")
- (version "5.3-1")
+ (version "5.3-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "gamlss" version))
(sha256
(base32
- "1ngf6g4zixwm6ni5r0fs0f6132xd2f2a6mlski9hlqnvvwb46iwr"))))
+ "06mh00jjxnqwknbv777hawjk0zm81ixrp35fg59mrlqz8y3p2w3j"))))
(properties `((upstream-name . "gamlss")))
(build-system r-build-system)
(propagated-inputs
(define-public r-actuar
(package
(name "r-actuar")
- (version "3.1-1")
+ (version "3.1-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "actuar" version))
(sha256
(base32
- "0sxn1mskh7x164f1vbrqnadgxnq7y2p3a9mlmqc0sp6cqkw9lhp9"))))
+ "0gaqm8bkjly2b1jkr1nqnxlp5vqvfpj0a4jd70jv4f9ndlif676y"))))
(properties `((upstream-name . "actuar")))
(build-system r-build-system)
(propagated-inputs `(("r-expint" ,r-expint)))
(define-public r-imager
(package
(name "r-imager")
- (version "0.42.7")
+ (version "0.42.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "imager" version))
(sha256
(base32
- "1dq0rblnrmnk689bcdmml179gk9lff8x92s2npkjllgjq5q2vfpd"))))
+ "1kzl93l6k9i4528bbycbqxdn28mj7hnx0fbxisva859xl1wys5c5"))))
(properties `((upstream-name . "imager")))
(build-system r-build-system)
(inputs
(define-public r-univoutl
(package
(name "r-univoutl")
- (version "0.2")
+ (version "0.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "univOutl" version))
(sha256
(base32
- "0rlc3w7cx2hfxacpjs9kmjzv5p8v9wxnlpxi3rh276wiy5zdr91v"))))
+ "1hhpxrpmp2wbrynx9xjndnp2sccirgky2x6ksd6yk6phmk0rbzjp"))))
(properties `((upstream-name . "univOutl")))
(build-system r-build-system)
(propagated-inputs
(define-public r-shapes
(package
(name "r-shapes")
- (version "1.2.5")
+ (version "1.2.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "shapes" version))
(sha256
(base32
- "0gfpdydfysp5mwg7qmkn73s67gvh2szb40mzqrx97h41ijgcgd8s"))))
+ "1p9fr95zk3q2v277c5ksb0nh26mcpzwjzjb2lmag51z6hck8cb66"))))
(properties `((upstream-name . "shapes")))
(build-system r-build-system)
(propagated-inputs
(define-public r-forecast
(package
(name "r-forecast")
- (version "8.13")
+ (version "8.14")
(source
(origin
(method url-fetch)
(uri (cran-uri "forecast" version))
(sha256
(base32
- "0vrql5d4v28890np2m6ws1nr1fcl6frs1bz74vfkihkixcmkl3j9"))))
+ "12bfw029xb1dndcjyn2r7a51i7hnkkbdilp69k97sz2v8b7v1y3s"))))
(properties `((upstream-name . "forecast")))
(build-system r-build-system)
(propagated-inputs
(define-public r-quanteda
(package
(name "r-quanteda")
- (version "2.1.2")
+ (version "3.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "quanteda" version))
(sha256
(base32
- "13rjwgmg5v1dbryrs9ifyy76s5ib6wrbrm2y5af44vhf1h6p9cvy"))))
+ "0b1jfkdhpsg5jhjz4p0nf4cmi9p8w40wv3i2f17jf2x1n1y2hjj8"))))
(properties `((upstream-name . "quanteda")))
(build-system r-build-system)
(propagated-inputs
- `(("r-data-table" ,r-data-table)
- ("r-digest" ,r-digest)
- ("r-extrafont" ,r-extrafont)
- ("r-fastmatch" ,r-fastmatch)
- ("r-ggplot2" ,r-ggplot2)
- ("r-ggrepel" ,r-ggrepel)
- ("r-jsonlite" ,r-jsonlite)
+ `(("r-fastmatch" ,r-fastmatch)
("r-magrittr" ,r-magrittr)
("r-matrix" ,r-matrix)
- ("r-network" ,r-network)
- ("r-proxyc" ,r-proxyc)
("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo)
("r-rcppparallel" ,r-rcppparallel)
- ("r-sna" ,r-sna)
("r-snowballc" ,r-snowballc)
("r-stopwords" ,r-stopwords)
("r-stringi" ,r-stringi)
(define-public r-packrat
(package
(name "r-packrat")
- (version "0.5.0")
+ (version "0.6.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "packrat" version))
(sha256
(base32
- "1xy5dd2hrpqa07jfl4s7dsrya05mf36ms74j833scdz0zf89586n"))))
+ "01cn2vf95nc8bh0hh8imkn030yra3hx64q1fb8jwsr52p9s397fr"))))
(properties `((upstream-name . "packrat")))
(build-system r-build-system)
(home-page "https://github.com/rstudio/packrat/")
(define-public r-latex2exp
(package
(name "r-latex2exp")
- (version "0.4.0")
+ (version "0.5.0")
(source (origin
(method url-fetch)
(uri (cran-uri "latex2exp" version))
(sha256
(base32
- "12nbcgfmv13k6sc6m326ras9bcvy380b7rxcxphn06r3cfkby0zw"))))
+ "0qknpw7zwwbzsbry94j8fn48mq7kq5rc5448g9hybbisain3wfvg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-stringr" ,r-stringr)
("r-magrittr" ,r-magrittr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/stefano-meschiari/latex2exp/")
(synopsis "Use LaTeX expressions in plots")
(description "@code{latex2exp} parses and converts LaTeX math formulas to
(define-public r-brms
(package
(name "r-brms")
- (version "2.14.4")
+ (version "2.15.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "brms" version))
(sha256
(base32
- "0mzwihhgmn405l6zq11a180q4k3chggj9qj0j7q838b9vrszg59j"))))
+ "0byc3fyvf9qbvvgwf55ih5d4br1nnxlbaidq9fvr11bmv38h25y1"))))
(properties `((upstream-name . "brms")))
(build-system r-build-system)
(propagated-inputs
(define-public r-lightgbm
(package
(name "r-lightgbm")
- (version "3.1.1")
+ (version "3.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "lightgbm" version))
(sha256
(base32
- "1pwsh6j9ksahh58b15j5ij56bsc6syy3z4k4a5zhy5n7829rz555"))))
+ "0aw1zcrg7nhddfaif9544hn8g8qcylv6vzpkf8d3kl07nzvgxkvj"))))
(properties `((upstream-name . "lightgbm")))
(build-system r-build-system)
(propagated-inputs
(define-public r-shapforxgboost
(package
(name "r-shapforxgboost")
- (version "0.1.0")
+ (version "0.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "SHAPforxgboost" version))
(sha256
(base32
- "0jgyss9bawl7sf4dwa75sn7ld3mvrrr0z2074lbkq3f5qb9gwsly"))))
+ "106nsf02b1w3yshb55lwnyw1rl1a60162v2wk8znjz3b4ln3mqj5"))))
(properties
`((upstream-name . "SHAPforxgboost")))
(build-system r-build-system)
("r-ggforce" ,r-ggforce)
("r-ggplot2" ,r-ggplot2)
("r-ggpubr" ,r-ggpubr)
- ("r-lightgbm" ,r-lightgbm)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-xgboost" ,r-xgboost)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/liuyanguu/SHAPforxgboost")
(synopsis "SHAP Plots for XGBoost")
(description
which may also be useful for other purposes.")
(license license:gpl2+)))
+(define-public r-spatstat-sparse
+ (package
+ (name "r-spatstat-sparse")
+ (version "1.2-1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "spatstat.sparse" version))
+ (sha256
+ (base32
+ "1w312q7gxzchigxxzk9akscdsz66j5085lgjryamschjgp4f8yk2"))))
+ (properties
+ `((upstream-name . "spatstat.sparse")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-abind" ,r-abind)
+ ("r-matrix" ,r-matrix)
+ ("r-spatstat-utils" ,r-spatstat-utils)
+ ("r-tensor" ,r-tensor)))
+ (home-page "http://spatstat.org/")
+ (synopsis "Sparse three-dimensional arrays and linear algebra utilities")
+ (description
+ "This package defines sparse three-dimensional arrays and supports
+standard operations on them. The package also includes utility functions for
+matrix calculations that are common in statistics, such as quadratic forms.")
+ (license license:gpl2+)))
+
(define-public r-spatstat-data
(package
(name "r-spatstat-data")
package.")
(license license:gpl2+)))
-(define-public r-spatstat
+(define-public r-spatstat-geom
(package
- (name "r-spatstat")
- (version "1.64-1")
+ (name "r-spatstat-geom")
+ (version "1.65-5")
(source
(origin
(method url-fetch)
- (uri (cran-uri "spatstat" version))
+ (uri (cran-uri "spatstat.geom" version))
(sha256
(base32
- "06jmxfs9kz9qqi3ichfgn8dglwb87kq2nl578p83za5psv8cfgya"))))
- (properties `((upstream-name . "spatstat")))
+ "0g0m5b3nbzpyblbp77n56k6aiw3fn23jkk72h9fhqlg1ydn2fzpk"))))
+ (properties `((upstream-name . "spatstat.geom")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-deldir" ,r-deldir)
+ ("r-polyclip" ,r-polyclip)
+ ("r-spatstat-data" ,r-spatstat-data)
+ ("r-spatstat-sparse" ,r-spatstat-sparse)
+ ("r-spatstat-utils" ,r-spatstat-utils)))
+ (home-page "http://spatstat.org/")
+ (synopsis "Geometrical functionality of the spatstat package")
+ (description
+ "This is a subset of the original spatstat package, containing the
+user-level code from spatstat which performs geometrical operations, except
+for the geometry of linear networks.")
+ (license license:gpl2+)))
+
+(define-public r-spatstat-core
+ (package
+ (name "r-spatstat-core")
+ (version "1.65-5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "spatstat.core" version))
+ (sha256
+ (base32
+ "0wq61sd53hwyk3fzjdc2prrr66n67zbwb5i3ii7kvyhfwx0xikm3"))))
+ (properties `((upstream-name . "spatstat.core")))
(build-system r-build-system)
(propagated-inputs
`(("r-abind" ,r-abind)
- ("r-deldir" ,r-deldir)
("r-goftest" ,r-goftest)
("r-matrix" ,r-matrix)
("r-mgcv" ,r-mgcv)
("r-nlme" ,r-nlme)
- ("r-polyclip" ,r-polyclip)
("r-rpart" ,r-rpart)
("r-spatstat-data" ,r-spatstat-data)
+ ("r-spatstat-geom" ,r-spatstat-geom)
+ ("r-spatstat-sparse" ,r-spatstat-sparse)
("r-spatstat-utils" ,r-spatstat-utils)
("r-tensor" ,r-tensor)))
+ (home-page "http://spatstat.org/")
+ (synopsis "Core functionality of the spatstat package")
+ (description
+ "This is a subset of the original spatstat package, containing all of the
+user-level code from spatstat, except for the code for linear networks.")
+ (license license:gpl2+)))
+
+(define-public r-spatstat-linnet
+ (package
+ (name "r-spatstat-linnet")
+ (version "1.65-3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "spatstat.linnet" version))
+ (sha256
+ (base32
+ "1y088r26h5yv006ydgcb4iwpvnc7ql857gky0hbi7xqqciqr8wdv"))))
+ (properties
+ `((upstream-name . "spatstat.linnet")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-matrix" ,r-matrix)
+ ("r-spatstat-core" ,r-spatstat-core)
+ ("r-spatstat-data" ,r-spatstat-data)
+ ("r-spatstat-geom" ,r-spatstat-geom)
+ ("r-spatstat-utils" ,r-spatstat-utils)))
+ (home-page "http://spatstat.org/")
+ (synopsis "Linear networks functionality of the spatstat package")
+ (description
+ "This is a subset of the spatstat package, containing its functionality
+for spatial data on a linear network.")
+ (license license:gpl2+)))
+
+(define-public r-spatstat
+ (package
+ (name "r-spatstat")
+ (version "2.0-1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "spatstat" version))
+ (sha256
+ (base32
+ "1xq11ijc0d0lbixxb3wnvyr4gplfj2d2i64ynsa089xd525zzzbw"))))
+ (properties `((upstream-name . "spatstat")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-spatstat-core" ,r-spatstat-core)
+ ("r-spatstat-data" ,r-spatstat-data)
+ ("r-spatstat-geom" ,r-spatstat-geom)
+ ("r-spatstat-linnet" ,r-spatstat-linnet)
+ ("r-spatstat-utils" ,r-spatstat-utils)))
(home-page "http://www.spatstat.org")
(synopsis "Spatial Point Pattern analysis, model-fitting, simulation, tests")
(description
(define-public r-workflows
(package
(name "r-workflows")
- (version "0.2.1")
+ (version "0.2.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "workflows" version))
(sha256
(base32
- "1mk0pnmpqlhf143mvj9rwvjrrshirz6s83s5hbfalhnyw7hzkfb9"))))
+ "19ipcxx4qfz28cjkgr1vny03yhmbd3m2v64v30gk5pf73nazvmaz"))))
(properties `((upstream-name . "workflows")))
(build-system r-build-system)
(propagated-inputs
("r-hardhat" ,r-hardhat)
("r-parsnip" ,r-parsnip)
("r-rlang" ,r-rlang)
- ("r-tidyselect" ,r-tidyselect)))
+ ("r-tidyselect" ,r-tidyselect)
+ ("r-vctrs" ,r-vctrs)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/tidymodels/workflows")
methods, and post-processing steps.")
(license license:expat)))
+(define-public r-workflowsets
+ (package
+ (name "r-workflowsets")
+ (version "0.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "workflowsets" version))
+ (sha256
+ (base32
+ "1q41isvj7hhbkx3y8k6kazpiygig92xannsz8dpklh0k3j9l3c2p"))))
+ (properties `((upstream-name . "workflowsets")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-cli" ,r-cli)
+ ("r-dplyr" ,r-dplyr)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-prettyunits" ,r-prettyunits)
+ ("r-purrr" ,r-purrr)
+ ("r-rlang" ,r-rlang)
+ ("r-rsample" ,r-rsample)
+ ("r-tibble" ,r-tibble)
+ ("r-tidyr" ,r-tidyr)
+ ("r-tune" ,r-tune)
+ ("r-vctrs" ,r-vctrs)
+ ("r-withr" ,r-withr)
+ ("r-workflows" ,r-workflows)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/tidymodels/workflowsets")
+ (synopsis "Create a collection of tidymodels workflows")
+ (description
+ "A workflow is a combination of a model and preprocessors (e.g, a
+formula, recipe, etc.). In order to try different combinations of these, an
+object can be created that contains many workflows. There are functions to
+create workflows en masse as well as training them and visualizing the
+results.")
+ (license license:expat)))
+
(define-public r-tidyposterior
(package
(name "r-tidyposterior")
data structures of the tidyverse.")
(license license:gpl3)))
+(define-public r-lsa
+ (package
+ (name "r-lsa")
+ (version "0.73.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "lsa" version))
+ (sha256
+ (base32
+ "1a33irqa6qvbc02z12rgbgv8kxq2gmahy7j5bg8b23lvvaxif06b"))))
+ (properties `((upstream-name . "lsa")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-snowballc" ,r-snowballc)))
+ (home-page "https://cran.r-project.org/package=lsa")
+ (synopsis "Latent semantic analysis")
+ (description
+ "The basic idea of latent semantic analysis (LSA) is, that text do have a
+higher order (=latent semantic) structure which, however, is obscured by word
+usage (e.g. through the use of synonyms or polysemy). By using conceptual
+indices that are derived statistically via a truncated singular value
+decomposition (a two-mode factor analysis) over a given document-term matrix,
+this variability problem can be overcome.")
+ (license license:gpl2+)))
+
(define-public r-mlecens
(package
(name "r-mlecens")
(define-public r-seurat
(package
(name "r-seurat")
- (version "4.0.0")
+ (version "4.0.1")
(source (origin
(method url-fetch)
(uri (cran-uri "Seurat" version))
(sha256
(base32
- "1mp3py00bmzj4541d8ry5sfzkpfzvnl9dpa8n4qhakd13dl30xdn"))))
+ "17cmp9mimvykb8ny796dn1zwmvg0pwwjw1zcixyamc5q1lwnxi3p"))))
(properties `((upstream-name . "Seurat")))
(build-system r-build-system)
(propagated-inputs
("r-sctransform" ,r-sctransform)
("r-seuratobject" ,r-seuratobject)
("r-shiny" ,r-shiny)
- ("r-spatstat" ,r-spatstat)
+ ("r-spatstat-core" ,r-spatstat-core)
+ ("r-spatstat-geom" ,r-spatstat-geom)
("r-tibble" ,r-tibble)
("r-uwot" ,r-uwot)))
(home-page "http://www.satijalab.org/seurat")
rate speciation and extinction.")
(license license:gpl2+)))
-(define-public r-absfiltergsea
- (package
- (name "r-absfiltergsea")
- (version "1.5.1")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "AbsFilterGSEA" version))
- (sha256
- (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
- (properties `((upstream-name . "AbsFilterGSEA")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-deseq" ,r-deseq)
- ("r-limma" ,r-limma)
- ("r-rcpp" ,r-rcpp)
- ("r-rcpparmadillo" ,r-rcpparmadillo)))
- (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/")
- (synopsis "Improved false positive control of gene-permuting with absolute filtering")
- (description
- "This package provides a function that performs gene-permuting of a gene-set
-enrichment analysis (GSEA) calculation with or without the absolute filtering.
- Without filtering, users can perform (original) two-tailed or one-tailed
-absolute GSEA.")
- (license license:gpl2)))
-
(define-public r-calculus
(package
(name "r-calculus")
(define-public r-bbotk
(package
(name "r-bbotk")
- (version "0.3.0")
+ (version "0.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "bbotk" version))
(sha256
(base32
- "0kbjbwwq1fdfpl4xzy08hz4qvhjjchvz58icxq0dlbsmdyqwhwv0"))))
+ "1f29wxnxr73c4yp5afk05jqggpm7k1z8wiak8xsyw68h7xflq550"))))
(properties `((upstream-name . "bbotk")))
(build-system r-build-system)
(propagated-inputs
(define-public r-mlr3tuning
(package
(name "r-mlr3tuning")
- (version "0.7.0")
+ (version "0.8.0")
(source (origin
(method url-fetch)
(uri (cran-uri "mlr3tuning" version))
(sha256
(base32
- "0xpq16qij05nsfwg0qnfziqjvgk5wn0dgl0sb5gg3qsp1cs6vfqj"))))
+ "16rvsf0jf06yvalydbs7zzn2994hvvyfw975ydiyv3wy1qzgr8bv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bbotk" ,r-bbotk)
(define-public r-textshaping
(package
(name "r-textshaping")
- (version "0.3.1")
+ (version "0.3.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "textshaping" version))
(sha256
(base32
- "16y3amb9cxwq126q1mxssx7kswzalqf9n2437mi5n7q1nqby6wlq"))))
+ "0fqh4z505b2qriqcj70g2hhdgiawd3w2rs9rqxdwizz5vk8jjygx"))))
(properties `((upstream-name . "textshaping")))
(build-system r-build-system)
(inputs
`(("r-data-table" ,r-data-table)
("r-slam" ,r-slam)
("r-stringi" ,r-stringi)))
- (home-page "http://github.com/trinker/textshape")
+ (home-page "https://github.com/trinker/textshape")
(synopsis "Tools for Reshaping Text")
(description
"Tools that can be used to reshape and restructure text data.")
networks, dependency relationships as well as text clustering. Feel free to
join the effort of providing interesting text visualisations.")
(license license:gpl2)))
+
+(define-public r-gsa
+ (package
+ (name "r-gsa")
+ (version "1.03.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "GSA" version))
+ (sha256
+ (base32
+ "05x9wspah1cdznjpncqam1iawsxdiigyl8v2anyhss2k7wwd94p1"))))
+ (properties `((upstream-name . "GSA")))
+ (build-system r-build-system)
+ (home-page "https://statweb.stanford.edu/~tibs/GSA/")
+ (synopsis "Gene set analysis")
+ (description "This package lets you determine the significance of
+pre-defined sets of genes with respect to an outcome variable, such as a group
+indicator, a quantitative variable or a survival time.")
+ ;; Any version of the LGPL
+ (license license:lgpl3+)))
+
+(define-public r-samr
+ (package
+ (name "r-samr")
+ (version "3.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "samr" version))
+ (sha256
+ (base32
+ "01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"))))
+ (properties `((upstream-name . "samr")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-gsa" ,r-gsa)
+ ("r-impute" ,r-impute)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-openxlsx" ,r-openxlsx)
+ ("r-shiny" ,r-shiny)
+ ("r-shinyfiles" ,r-shinyfiles)))
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "https://statweb.stanford.edu/~tibs/SAM/")
+ (synopsis "Significance analysis of Microarrays")
+ (description
+ "This is a package for significance analysis of Microarrays for
+differential expression analysis, RNAseq data and related problems.")
+ ;; Any version of the LGPL
+ (license license:lgpl3+)))