;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2016, 2017 Ben Woodcroft <donttrustben@gmail.com>
-;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org>
+;;; Copyright © 2016, 2017, 2018, 2020, 2021 Roel Janssen <roel@gnu.org>
;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Raoul Bonnal <ilpuccio.febo@gmail.com>
;;; Copyright © 2018 Vijayalakshmi Vedantham <vijimay12@gmail.com>
;;; Copyright © 2020 Magali Lemes <magalilemes00@gmail.com>
;;; Copyright © 2020 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2020 Aniket Patil <aniket112.patil@gmail.com>
+;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
;;;
;;; This file is part of GNU Guix.
;;;
(define-public r-diffobj
(package
(name "r-diffobj")
- (version "0.3.3")
+ (version "0.3.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "diffobj" version))
(sha256
(base32
- "1x3d5sk8mk0s2d7dq8wxi1zv6krlx33n22ls2jwnb58b8xrmakj1"))))
+ "1z4yhfasjpi9rxl1lh9bny7yvs947a6hhc768azc1wwad748mk9q"))))
(properties `((upstream-name . "diffobj")))
(build-system r-build-system)
(propagated-inputs `(("r-crayon" ,r-crayon)))
(define-public r-ggpmisc
(package
(name "r-ggpmisc")
- (version "0.3.8-1")
+ (version "0.3.9")
(source (origin
(method url-fetch)
(uri (cran-uri "ggpmisc" version))
(sha256
(base32
- "0kcrh73nwha52vl6z35wafmqs5lsdh2p4nqvi2ir70cv1k5y46zf"))))
+ "0nb0lpwqph9334s9sq77mk3nd22icy9d9hywz4awhf6nvp5rcc2v"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
(define-public r-oenb
(package
(name "r-oenb")
- (version "0.0.1")
+ (version "0.0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "oenb" version))
(sha256
(base32
- "1x1jlqp6r27c4gb7wafzpmh5rq6yq61a2d395r5lsmv2g5jb4biz"))))
+ "1jgxw7ycx2lcdzglg9nix8k08fs4r6i5jdsjzrd6w1dg6smsinl5"))))
(properties `((upstream-name . "oenb")))
(build-system r-build-system)
(propagated-inputs
(define-public r-reprex
(package
(name "r-reprex")
- (version "1.0.0")
+ (version "2.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "reprex" version))
(sha256
(base32
- "07nzx0fdl48jw95ipx17ql0l13q60yl3rjrkj1m375wrc7h1v5nx"))))
+ "1lcnxczy28n4g3rvph09va7svcznfyqa7zdggklqb924qvy7flwh"))))
(build-system r-build-system)
(propagated-inputs
`(("r-callr" ,r-callr)
("r-knitr" ,r-knitr)
("r-rlang" ,r-rlang)
("r-rmarkdown" ,r-rmarkdown)
+ ("r-rstudioapi" ,r-rstudioapi)
("r-withr" ,r-withr)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(define-public r-callr
(package
(name "r-callr")
- (version "3.5.1")
+ (version "3.6.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "callr" version))
(sha256
(base32
- "15l6ppsxdadlnl4fk0f8bvf327n8izk96px5d08m1ay9iij8qcyf"))))
+ "050s7l1ipi6snbj6xnk052l6acycnxjyzv84026adw5x8kki0yz6"))))
(build-system r-build-system)
(propagated-inputs
`(("r-r6" ,r-r6)
into a pipeline of data manipulation and visualisation.")
(license license:gpl3)))
+(define-public r-hmm
+ (package
+ (name "r-hmm")
+ (version "1.0")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "HMM" version))
+ (sha256
+ (base32
+ "0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw"))))
+ (properties `((upstream-name . "HMM")))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/HMM/")
+ (synopsis "Hidden Markov Models")
+ (description "This package provides an easy to use library to setup, apply
+and make inference with discrete time and discrete space hidden Markov
+models.")
+ (license license:gpl2+)))
+
(define-public r-httpuv
(package
(name "r-httpuv")
bindings that call a C++ function.")
(license license:expat)))
-(define-public r-bisquerna
- (package
- (name "r-bisquerna")
- (version "1.0.4")
- (source (origin
- (method url-fetch)
- (uri (cran-uri "BisqueRNA" version))
- (sha256
- (base32
- "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2"))))
- (properties `((upstream-name . "BisqueRNA")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-limsolve" ,r-limsolve)))
- (home-page "https://www.biorxiv.org/content/10.1101/669911v1")
- (synopsis "Decomposition of bulk expression with single-cell sequencing")
- (description "This package provides tools to accurately estimate cell type
-abundances from heterogeneous bulk expression. A reference-based method
-utilizes single-cell information to generate a signature matrix and
-transformation of bulk expression for accurate regression based estimates.
-A marker-based method utilizes known cell-specific marker genes to measure
-relative abundances across samples.")
- (license license:gpl3)))
-
(define-public r-auc
(package
(name "r-auc")
(define-public r-psych
(package
(name "r-psych")
- (version "2.0.12")
+ (version "2.1.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "psych" version))
(sha256
(base32
- "0k5dw5nb7kx7f21b0z01dry99qcpnk7iaicv7xq9d35wv2hx8wca"))))
+ "1ibh1ivr280wpmk3qjgm715dk79wx0ikjl9jjjcqs03q6vz4wmdx"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)
("r-mnormt" ,r-mnormt)
("r-nlme" ,r-nlme)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://cran.r-project.org/web/packages/psych/")
(synopsis "Procedures for psychological, psychometric, and personality research")
(description
(define-public r-broom
(package
(name "r-broom")
- (version "0.7.5")
+ (version "0.7.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "broom" version))
(sha256
(base32
- "1qjyl5b100bsakm48w1vi3819lkpys7vb86n1sv9h4y2wr1c4jmw"))))
+ "1ljcl8mh0yqxw3qxzar482qwbxbcaim1x6y1wm82ws12pfdw0j8n"))))
(build-system r-build-system)
(propagated-inputs
`(("r-backports" ,r-backports)
(define-public r-vioplot
(package
(name "r-vioplot")
- (version "0.3.5")
+ (version "0.3.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "vioplot" version))
(sha256
(base32
- "0aiy615kn9lpr2cs757g3pklg81n01yhqh0wrwv111fn3cy86r0v"))))
+ "15vmrm9gwdhfg8mnq8rsg7m59kzc9h53cv96am4ds1dkm56w4n6p"))))
(build-system r-build-system)
(propagated-inputs
`(("r-sm" ,r-sm)
(define-public r-cli
(package
(name "r-cli")
- (version "2.3.1")
+ (version "2.4.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "cli" version))
(sha256
(base32
- "1jh64ixn6mg2ap1sx4azrxkjnlsyjbfxyc9zjkx8m9dlakgf4v2i"))))
+ "0l1s9yv23bc7mm0hfdlamgz4wjfrisv8aylr65ihjs98jsynrkg3"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-assertthat" ,r-assertthat)
- ("r-glue" ,r-glue)))
+ `(("r-glue" ,r-glue)))
(home-page "https://github.com/r-lib/cli#readme")
(synopsis "Helpers for developing command line interfaces")
(description "This package provides a suite of tools designed to build
(define-public r-processx
(package
(name "r-processx")
- (version "3.4.5")
+ (version "3.5.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "processx" version))
(sha256
- (base32 "055v2gdrgqsfy8s672wsq79bqr44b4jjmcbqivx4p2d6lqx10s73"))))
+ (base32 "1z7zag7g041xlhzhkdfl33y2phc877h1pwj9k69p69b967qi6p6k"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ps" ,r-ps)
(define-public r-vctrs
(package
(name "r-vctrs")
- (version "0.3.6")
+ (version "0.3.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "vctrs" version))
(sha256
(base32
- "09ddxgzyah7lw42hn6n8fynsixf43s10jamsf94d2aidky63czfz"))))
+ "03hyxk3x635xfdn2x707gygdb2xk0cayl1nl44zib9bwqyyb7nas"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-digest" ,r-digest)
- ("r-ellipsis" ,r-ellipsis)
+ `(("r-ellipsis" ,r-ellipsis)
("r-glue" ,r-glue)
("r-rlang" ,r-rlang)))
(native-inputs
(define-public r-tinytex
(package
(name "r-tinytex")
- (version "0.30")
+ (version "0.31")
(source
(origin
(method url-fetch)
(uri (cran-uri "tinytex" version))
(sha256
(base32
- "0dk6mpszwh1m65b0wfwjlcvpzywmasf6p31niqiq53wnd92my0gw"))))
+ "04a3ncaxix30n9m73slpsn1idxv7j1f7fy3nhxpvkk514x9rgg0p"))))
(build-system r-build-system)
(propagated-inputs
`(("r-xfun" ,r-xfun)))
(define-public r-sapa
(package
(name "r-sapa")
- (version "2.0-2")
+ (version "2.0-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "sapa" version))
(sha256
(base32
- "056xlh14dnzq4x7sbp7ff2k61jxy7110a742b502vz549qfrr5ds"))))
+ "0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ifultools" ,r-ifultools)
(define-public r-arules
(package
(name "r-arules")
- (version "1.6-6")
+ (version "1.6-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "arules" version))
(sha256
(base32
- "1pk3jjizn2m5rwi7qkdkbq9f07acgpy0qdzzqmx0agg47cwahlkm"))))
+ "0m80kndfbannw8h53nqdd5wl8h33q2z259aa1cp1nwadaxf9fc1q"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)))
(define-public r-rastervis
(package
(name "r-rastervis")
- (version "0.50")
+ (version "0.50.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "rasterVis" version))
(sha256
(base32
- "0m7fjd53apxim0d0rjnyzc28vmfcg4spcrn0zbnk8llillxji1hi"))))
+ "1fkmyllydnmk3j2cmgf86r91wyxf2kh573x8bkck7wgkfniw4h7w"))))
(properties `((upstream-name . "rasterVis")))
(build-system r-build-system)
(propagated-inputs
(define-public r-renv
(package
(name "r-renv")
- (version "0.13.0")
+ (version "0.13.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "renv" version))
(sha256
(base32
- "16n2dz9jibc03f7q1wrzxss6l5jmaks7m2lnli9dz9anvcmxbdia"))))
+ "0jlsf6vfvqhr4i35xy3xf1ixkfillivzy3wbpl6ca9vyjpnhiwj1"))))
(properties `((upstream-name . "renv")))
(build-system r-build-system)
(native-inputs
(define-public r-rbibutils
(package
(name "r-rbibutils")
- (version "2.0")
+ (version "2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "rbibutils" version))
(sha256
(base32
- "1vfg2188i4dyhrmvnwpsh2la8qkd4wkryz2fpj4cppi1wfz3ml83"))))
+ "13phw0dk3p3s1z45ff7dbqnn27zws1209mp3d4763zh7xnsdsl44"))))
(properties `((upstream-name . "rbibutils")))
(build-system r-build-system)
(home-page "https://geobosh.github.io/rbibutils/")
(define-public r-officer
(package
(name "r-officer")
- (version "0.3.17")
+ (version "0.3.18")
(source
(origin
(method url-fetch)
(uri (cran-uri "officer" version))
(sha256
(base32
- "1apg0dh1zfhrqcbbmm8318l40gyjbqc2l9sdvwxx7qi8mzc1mqvw"))))
+ "1j3bv4j8x5ijj0j447vpdsk4p8pl3ncwdwnns6n3plfrqgsf3vsg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-r6" ,r-r6)
(define-public r-insight
(package
(name "r-insight")
- (version "0.13.1")
+ (version "0.13.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "insight" version))
(sha256
(base32
- "1la4yxzfl9fnknamnaziil6gvpdzl78z16lfzis9jgzg8r9q0y5l"))))
+ "03b7kd17h25mi1si40ibcp3jpasyqpj51mr8js0ywywyfw7909j1"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
`((upstream-name . "PhysicalActivity")))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/PhysicalActivity/")
- (synopsis "Procesing accelerometer data for physical activity measurement")
+ (synopsis "Processing accelerometer data for physical activity measurement")
(description
"This @code{r-physicalactivity} package provides a function @code{wearingMarking}
-for classification of monitor wear and nonwear time intervals in accelerometer
+for classification of monitored wear and nonwear time intervals in accelerometer
data collected to assess physical activity. The package also contains functions
for making plots of accelerometer data and obtaining the summary of various
information including daily monitor wear time and the mean monitor wear time
(define-public r-magick
(package
(name "r-magick")
- (version "2.7.0")
+ (version "2.7.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "magick" version))
(sha256
(base32
- "0m1kij6pp7dmsrhl80h60iyccjqmbbb3zdnqdc9sgy1kj1x3pscp"))))
+ "16svy84dq25g69axqgympsrh8dzssa1w3zz08zc8m6nprr3jqwqf"))))
(build-system r-build-system)
(inputs
`(("imagemagick" ,imagemagick)
(define-public r-emmeans
(package
(name "r-emmeans")
- (version "1.5.4")
+ (version "1.5.5-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "emmeans" version))
(sha256
(base32
- "1rbh3ls23fazrwpsam5llk3kqdzz2zvsms3i4f1cgn34ky3w8361"))))
+ "0l5dd71ihhs7zy6ygniy07iisgy7a1ai1w41hqf84swb0j3cl6iz"))))
(build-system r-build-system)
(propagated-inputs
`(("r-estimability" ,r-estimability)
(define-public r-ggeffects
(package
(name "r-ggeffects")
- (version "1.0.1")
+ (version "1.0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggeffects" version))
(sha256
(base32
- "1c5rvycaqp7zp1j6j17c84v8nlpi0w7bhfxmcha4n37m0snk1kgy"))))
+ "0qh8x8yi8gkb5x7zfxmb1c689k7bhc1f5947yymny34j7xdsb9s8"))))
(build-system r-build-system)
(propagated-inputs
`(("r-insight" ,r-insight)
(define-public r-effectsize
(package
(name "r-effectsize")
- (version "0.4.4")
+ (version "0.4.4-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "effectsize" version))
(sha256
(base32
- "0mgkq12ym72ncakkjpkzkjglhksyhj3iw8v4a8fjgpf7prvn191g"))))
+ "02rwf3lxnzgc8yh0wridsc6lqr9s6v0cqzbk4biwnr494rvs46zb"))))
(properties `((upstream-name . "effectsize")))
(build-system r-build-system)
(propagated-inputs
(define-public r-gh
(package
(name "r-gh")
- (version "1.2.0")
+ (version "1.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "gh" version))
(sha256
(base32
- "1zvy3ylxvni10lhvmbm9h14mg4wlsbdbzbzviwf28jxss8749219"))))
+ "16xa1qb1r28f8yc6ybjrxiq2zigxj886dp9k29jpsn5091xbzkq0"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cli" ,r-cli)
(define-public r-gert
(package
(name "r-gert")
- (version "1.2.0")
+ (version "1.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "gert" version))
(sha256
(base32
- "0ag2ia6cfb5drf3517lg5nhik1w0nv09a75wdy5jdciws1qra3d6"))))
+ "1fh72p92wj83yv1ch77jms6k1gjqfji8cmgw23vpxd0p8l9jj4h7"))))
(properties `((upstream-name . "gert")))
(build-system r-build-system)
(inputs
(define-public r-remotes
(package
(name "r-remotes")
- (version "2.2.0")
+ (version "2.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "remotes" version))
(sha256
(base32
- "1f1kdw9j1wald3fs8b3n68x1kljy07j60g3aw1aarx26ikyk9whj"))))
+ "0f35648bdxhvplcfj80r4hfj5w21f1s01kcz6b29d098c1mnfzb7"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(define-public r-summarytools
(package
(name "r-summarytools")
- (version "0.9.8")
+ (version "0.9.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "summarytools" version))
(sha256
(base32
- "0n7rad6bkfn9cb99wbfzbwl5qzch48r0gafhddfcqvyh4fbn2k0j"))))
+ "0ig7vgjvldbndwhky1bsi38zifr9ji8xvvfqbfffplac08llvrbr"))))
(build-system r-build-system)
(propagated-inputs
`(("r-base64enc" ,r-base64enc)
(define-public r-biocmanager
(package
(name "r-biocmanager")
- (version "1.30.10")
+ (version "1.30.12")
(source
(origin
(method url-fetch)
(uri (cran-uri "BiocManager" version))
(sha256
- (base32 "03n9s2vf7vgpgb5alpxwamf9xfkn32cbzngwyn6spq1bnh9a9dzk"))))
+ (base32 "0c2anza01pc36manj3cvycbq8p57qpq18dsimk3y3gpks70hhqf3"))))
(properties `((upstream-name . "BiocManager")))
(build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://cran.r-project.org/web/packages/BiocManager/")
(synopsis "Access the Bioconductor project package repository")
(description
(define-public r-tiff
(package
(name "r-tiff")
- (version "0.1-7")
+ (version "0.1-8")
(source
(origin
(method url-fetch)
(uri (cran-uri "tiff" version))
(sha256
(base32
- "101n6x70fr1dhcwx53g3s8q1j4wh93y0388v1s1316f8558rxqxh"))))
+ "18m17g5q3nz4v4wrqxnb129b1j02873g2vknddczkklf1pvq4x2b"))))
(build-system r-build-system)
(inputs
`(("libtiff" ,libtiff)
("libjpeg" ,libjpeg-turbo)
("zlib" ,zlib)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
(home-page "https://www.rforge.net/tiff/")
(synopsis "Read and write TIFF images")
(description
(define-public r-gargle
(package
(name "r-gargle")
- (version "1.0.0")
+ (version "1.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "gargle" version))
(sha256
(base32
- "0hsqn4hf935wn6vk2pwym7la4sdvy271y4cashp38pg4hkpg9zph"))))
+ "03y29dzz54bw9px5k8a72vmc000lcyrkc5l0izkqcciyi9ijkr3w"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-fs" ,r-fs)
+ `(("r-cli" ,r-cli)
+ ("r-fs" ,r-fs)
("r-glue" ,r-glue)
("r-httr" ,r-httr)
("r-jsonlite" ,r-jsonlite)
+ ("r-rappdirs" ,r-rappdirs)
("r-rlang" ,r-rlang)
+ ("r-rstudioapi" ,r-rstudioapi)
("r-withr" ,r-withr)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(define-public r-rmpfr
(package
(name "r-rmpfr")
- (version "0.8-2")
+ (version "0.8-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "Rmpfr" version))
(sha256
(base32
- "007pc7fpzl2mcg3qxa2vfjip6m2dr314qjsnybkj3kdj70bszxkl"))))
+ "1m9wwwch9wg886147brr2zfih65yfdfs3vmfvim1w6jykycasc9a"))))
(properties `((upstream-name . "Rmpfr")))
(build-system r-build-system)
(inputs
(define-public r-units
(package
(name "r-units")
- (version "0.7-0")
+ (version "0.7-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "units" version))
(sha256
(base32
- "0kwfcrrbcwl7s50n1wp33vswqzmprh91clvakbd1jpznqpg5m3js"))))
+ "0wwndzjjgqj795xvx1jwa86nwd8adfiwj0pn15yyzzk9baky2axw"))))
(build-system r-build-system)
(inputs
`(("udunits" ,udunits)))
(define-public r-sf
(package
(name "r-sf")
- (version "0.9-7")
+ (version "0.9-8")
(source
(origin
(method url-fetch)
(uri (cran-uri "sf" version))
(sha256
(base32
- "175fmnnw11fjhfgjv9sn9b0jfjcqbybpgwsvv99d5yddigvw5jja"))))
+ "096gg2hbynn6mv3w8n69x987fklg5rrgd0d4nbqaw7vhg1jhlmqi"))))
(build-system r-build-system)
(inputs
`(("gdal" ,gdal)
(define-public r-spdep
(package
(name "r-spdep")
- (version "1.1-5")
+ (version "1.1-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "spdep" version))
(sha256
(base32
- "0pbd7wrg5v44p2yxsjp774lpyzap3madir5mn5p3ix7ibk7ldjs7"))))
+ "0sg417d95paww625663lgmk6jwhs88djqzc96gbs1hxazlf77qb1"))))
(build-system r-build-system)
(propagated-inputs
`(("r-boot" ,r-boot)
(define-public r-rms
(package
(name "r-rms")
- (version "6.1-1")
+ (version "6.2-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "rms" version))
(sha256
- (base32 "1zgfd60lzbakcv7x0i5k3lkw3s0xx5bzssjgangna5lq2j17cdli"))))
+ (base32 "1di4xvsx0rwkr77nfqiysbg4qf699199xqil70i39d4zwfzqrm8h"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cluster" ,r-cluster)
(define-public r-tweenr
(package
(name "r-tweenr")
- (version "1.0.1")
+ (version "1.0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "tweenr" version))
(sha256
(base32
- "0sq90pbln6lkc2q3zflhkxxwpqdw5dd7igrxhdnlynkdrmi83mpg"))))
+ "17znizh4yabh2zs9mzyr0sl6p0pw49961i61br7cl1b7v9sza18q"))))
(build-system r-build-system)
(propagated-inputs
`(("r-farver" ,r-farver)
(description
"The aim of the ggplot2 package is to aid in visual data investigations.
This focus has led to a lack of facilities for composing specialized plots.
-Thi package aims to be a collection of mainly new statistics and geometries
+This package aims to be a collection of mainly new statistics and geometries
that fills this gap.")
(license license:expat)))
(define-public r-styler
(package
(name "r-styler")
- (version "1.3.2")
+ (version "1.4.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "styler" version))
(sha256
(base32
- "1waglhsy2c53qjgd2qhlzda3z0lbzbwx9fkrfhac41y6h91mgkrz"))))
+ "10fj4cnazicb2z9djbv5pszcmrf7wbzagbjvksffqpdc5vbbbw5x"))))
(build-system r-build-system)
(propagated-inputs
`(("r-backports" ,r-backports)
("r-tibble" ,r-tibble)
("r-withr" ,r-withr)
("r-xfun" ,r-xfun)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/r-lib/styler")
(synopsis "Non-invasive pretty printing of R code")
(description
(define-public r-dae
(package
(name "r-dae")
- (version "3.1-32")
+ (version "3.1-37")
(source
(origin
(method url-fetch)
(uri (cran-uri "dae" version))
(sha256
(base32
- "126w1lb9pz8mb2ajl2vz5dj798nbifp0dypnzfgcwixif5g5bpqi"))))
+ "102fgbdpn7yvm1zj180cv4sr1096sz35d4gndsv7w9kriqyi1c1l"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
(define-public r-dalex
(package
(name "r-dalex")
- (version "2.1.1")
+ (version "2.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "DALEX" version))
(sha256
(base32
- "1dnqsml94s648w8swsrq8spddnd4mj5pl3q6xxr917w6a1jxgyfz"))))
+ "1qnjbhilv4jfmwqxfi9xc5ysrh8gr84a2a5imjfci7d1n3zcnryn"))))
(properties `((upstream-name . "DALEX")))
(build-system r-build-system)
(propagated-inputs
(define-public r-gamlss-data
(package
(name "r-gamlss-data")
- (version "5.1-4")
+ (version "6.0-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "gamlss.data" version))
(sha256
(base32
- "1dgfspbmps6ipzcmw681wjdp320nm50dwsxafgrcwxndqgc7fdqd"))))
+ "1cjb2n5i5mnhmb5qbqycdbfg65j7nxb9s74yihqs9kpa39byrzcq"))))
(properties `((upstream-name . "gamlss.data")))
(build-system r-build-system)
(home-page "http://www.gamlss.org/")
(define-public r-gamlss
(package
(name "r-gamlss")
- (version "5.3-1")
+ (version "5.3-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "gamlss" version))
(sha256
(base32
- "1ngf6g4zixwm6ni5r0fs0f6132xd2f2a6mlski9hlqnvvwb46iwr"))))
+ "06mh00jjxnqwknbv777hawjk0zm81ixrp35fg59mrlqz8y3p2w3j"))))
(properties `((upstream-name . "gamlss")))
(build-system r-build-system)
(propagated-inputs
(define-public r-actuar
(package
(name "r-actuar")
- (version "3.1-1")
+ (version "3.1-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "actuar" version))
(sha256
(base32
- "0sxn1mskh7x164f1vbrqnadgxnq7y2p3a9mlmqc0sp6cqkw9lhp9"))))
+ "0gaqm8bkjly2b1jkr1nqnxlp5vqvfpj0a4jd70jv4f9ndlif676y"))))
(properties `((upstream-name . "actuar")))
(build-system r-build-system)
(propagated-inputs `(("r-expint" ,r-expint)))
(define-public r-imager
(package
(name "r-imager")
- (version "0.42.7")
+ (version "0.42.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "imager" version))
(sha256
(base32
- "1dq0rblnrmnk689bcdmml179gk9lff8x92s2npkjllgjq5q2vfpd"))))
+ "1kzl93l6k9i4528bbycbqxdn28mj7hnx0fbxisva859xl1wys5c5"))))
(properties `((upstream-name . "imager")))
(build-system r-build-system)
(inputs
(define-public r-univoutl
(package
(name "r-univoutl")
- (version "0.2")
+ (version "0.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "univOutl" version))
(sha256
(base32
- "0rlc3w7cx2hfxacpjs9kmjzv5p8v9wxnlpxi3rh276wiy5zdr91v"))))
+ "1hhpxrpmp2wbrynx9xjndnp2sccirgky2x6ksd6yk6phmk0rbzjp"))))
(properties `((upstream-name . "univOutl")))
(build-system r-build-system)
(propagated-inputs
(define-public r-shapes
(package
(name "r-shapes")
- (version "1.2.5")
+ (version "1.2.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "shapes" version))
(sha256
(base32
- "0gfpdydfysp5mwg7qmkn73s67gvh2szb40mzqrx97h41ijgcgd8s"))))
+ "1p9fr95zk3q2v277c5ksb0nh26mcpzwjzjb2lmag51z6hck8cb66"))))
(properties `((upstream-name . "shapes")))
(build-system r-build-system)
(propagated-inputs
(define-public r-quanteda
(package
(name "r-quanteda")
- (version "2.1.2")
+ (version "3.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "quanteda" version))
(sha256
(base32
- "13rjwgmg5v1dbryrs9ifyy76s5ib6wrbrm2y5af44vhf1h6p9cvy"))))
+ "0b1jfkdhpsg5jhjz4p0nf4cmi9p8w40wv3i2f17jf2x1n1y2hjj8"))))
(properties `((upstream-name . "quanteda")))
(build-system r-build-system)
(propagated-inputs
- `(("r-data-table" ,r-data-table)
- ("r-digest" ,r-digest)
- ("r-extrafont" ,r-extrafont)
- ("r-fastmatch" ,r-fastmatch)
- ("r-ggplot2" ,r-ggplot2)
- ("r-ggrepel" ,r-ggrepel)
- ("r-jsonlite" ,r-jsonlite)
+ `(("r-fastmatch" ,r-fastmatch)
("r-magrittr" ,r-magrittr)
("r-matrix" ,r-matrix)
- ("r-network" ,r-network)
- ("r-proxyc" ,r-proxyc)
("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo)
("r-rcppparallel" ,r-rcppparallel)
- ("r-sna" ,r-sna)
("r-snowballc" ,r-snowballc)
("r-stopwords" ,r-stopwords)
("r-stringi" ,r-stringi)
(define-public r-packrat
(package
(name "r-packrat")
- (version "0.5.0")
+ (version "0.6.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "packrat" version))
(sha256
(base32
- "1xy5dd2hrpqa07jfl4s7dsrya05mf36ms74j833scdz0zf89586n"))))
+ "01cn2vf95nc8bh0hh8imkn030yra3hx64q1fb8jwsr52p9s397fr"))))
(properties `((upstream-name . "packrat")))
(build-system r-build-system)
(home-page "https://github.com/rstudio/packrat/")
(define-public r-latex2exp
(package
(name "r-latex2exp")
- (version "0.4.0")
+ (version "0.5.0")
(source (origin
(method url-fetch)
(uri (cran-uri "latex2exp" version))
(sha256
(base32
- "12nbcgfmv13k6sc6m326ras9bcvy380b7rxcxphn06r3cfkby0zw"))))
+ "0qknpw7zwwbzsbry94j8fn48mq7kq5rc5448g9hybbisain3wfvg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-stringr" ,r-stringr)
("r-magrittr" ,r-magrittr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/stefano-meschiari/latex2exp/")
(synopsis "Use LaTeX expressions in plots")
(description "@code{latex2exp} parses and converts LaTeX math formulas to
(define-public r-lightgbm
(package
(name "r-lightgbm")
- (version "3.1.1")
+ (version "3.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "lightgbm" version))
(sha256
(base32
- "1pwsh6j9ksahh58b15j5ij56bsc6syy3z4k4a5zhy5n7829rz555"))))
+ "0aw1zcrg7nhddfaif9544hn8g8qcylv6vzpkf8d3kl07nzvgxkvj"))))
(properties `((upstream-name . "lightgbm")))
(build-system r-build-system)
(propagated-inputs
(define-public r-shapforxgboost
(package
(name "r-shapforxgboost")
- (version "0.1.0")
+ (version "0.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "SHAPforxgboost" version))
(sha256
(base32
- "0jgyss9bawl7sf4dwa75sn7ld3mvrrr0z2074lbkq3f5qb9gwsly"))))
+ "106nsf02b1w3yshb55lwnyw1rl1a60162v2wk8znjz3b4ln3mqj5"))))
(properties
`((upstream-name . "SHAPforxgboost")))
(build-system r-build-system)
("r-ggforce" ,r-ggforce)
("r-ggplot2" ,r-ggplot2)
("r-ggpubr" ,r-ggpubr)
- ("r-lightgbm" ,r-lightgbm)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-xgboost" ,r-xgboost)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/liuyanguu/SHAPforxgboost")
(synopsis "SHAP Plots for XGBoost")
(description
(define-public r-spatstat-utils
(package
(name "r-spatstat-utils")
- (version "2.0-0")
+ (version "2.1-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat.utils" version))
(sha256
(base32
- "1li0vksxpkvgyx3j2wi40kj5687vwakkfdix6icm6g01a0lb2m5d"))))
+ "18gqsc1a85pk69aifi10wprv1c0lci3zxp4wqjb27dlmlbz6jdgd"))))
(properties
`((upstream-name . "spatstat.utils")))
(build-system r-build-system)
(define-public r-spatstat-sparse
(package
(name "r-spatstat-sparse")
- (version "1.2-1")
+ (version "2.0-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat.sparse" version))
(sha256
(base32
- "1w312q7gxzchigxxzk9akscdsz66j5085lgjryamschjgp4f8yk2"))))
+ "1iqrpazb88s4w208adf2qgm4ajwz3kwqck65k9g5l28zw9jcxyr7"))))
(properties
`((upstream-name . "spatstat.sparse")))
(build-system r-build-system)
(define-public r-spatstat-data
(package
(name "r-spatstat-data")
- (version "2.0-0")
+ (version "2.1-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat.data" version))
(sha256
(base32
- "1z1jb1yzb7qhfg55dhzcrdvn5x8hpg9xif0hpnapddbmhxd1hbb7"))))
+ "0csmz5vjaxnznkbsfah8qd3v8p0y56jvis01ialxzvf71snl160v"))))
(properties `((upstream-name . "spatstat.data")))
(build-system r-build-system)
(propagated-inputs
(define-public r-spatstat-geom
(package
(name "r-spatstat-geom")
- (version "1.65-5")
+ (version "2.0-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat.geom" version))
(sha256
(base32
- "0g0m5b3nbzpyblbp77n56k6aiw3fn23jkk72h9fhqlg1ydn2fzpk"))))
+ "1r7nlgh62apchidg28fxq1a22iv1b29y5xmsg1kjwfvkbq8zxsvh"))))
(properties `((upstream-name . "spatstat.geom")))
(build-system r-build-system)
(propagated-inputs
`(("r-deldir" ,r-deldir)
("r-polyclip" ,r-polyclip)
("r-spatstat-data" ,r-spatstat-data)
- ("r-spatstat-sparse" ,r-spatstat-sparse)
("r-spatstat-utils" ,r-spatstat-utils)))
(home-page "http://spatstat.org/")
(synopsis "Geometrical functionality of the spatstat package")
(define-public r-spatstat-core
(package
(name "r-spatstat-core")
- (version "1.65-5")
+ (version "2.0-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat.core" version))
(sha256
(base32
- "0wq61sd53hwyk3fzjdc2prrr66n67zbwb5i3ii7kvyhfwx0xikm3"))))
+ "19wv27nfx48xkqa1amys4jf93k0d8xns20p84n5kqyibscdsksgx"))))
(properties `((upstream-name . "spatstat.core")))
(build-system r-build-system)
(propagated-inputs
(define-public r-spatstat-linnet
(package
(name "r-spatstat-linnet")
- (version "1.65-3")
+ (version "2.1-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat.linnet" version))
(sha256
(base32
- "1y088r26h5yv006ydgcb4iwpvnc7ql857gky0hbi7xqqciqr8wdv"))))
+ "1ia0qgggddiwhhyd3q516f3p6by0p4xnq26wqz7410n2ja60bbb4"))))
(properties
`((upstream-name . "spatstat.linnet")))
(build-system r-build-system)
(define-public r-spatstat
(package
(name "r-spatstat")
- (version "2.0-1")
+ (version "2.1-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat" version))
(sha256
(base32
- "1xq11ijc0d0lbixxb3wnvyr4gplfj2d2i64ynsa089xd525zzzbw"))))
+ "0vr5md53247v6crvjvg9m82vc6h914zzvkzfkga8x79hv35ii4as"))))
(properties `((upstream-name . "spatstat")))
(build-system r-build-system)
(propagated-inputs
(define-public r-cpp11
(package
(name "r-cpp11")
- (version "0.2.6")
+ (version "0.2.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "cpp11" version))
(sha256
(base32
- "118i8s7978vl9xyhnb47wcbd6rcc6b958mq2w8s3rdsd4pxv62gz"))))
+ "1m31yq3kn5wqvm0ahj08kb4bszbbhfybx3l2x975cjzgv3058h8x"))))
(properties `((upstream-name . "cpp11")))
(build-system r-build-system)
(native-inputs `(("r-knitr" ,r-knitr)))
(define-public r-muhaz
(package
(name "r-muhaz")
- (version "1.2.6.1")
+ (version "1.2.6.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "muhaz" version))
(sha256
(base32
- "08qh43zx6h3yby44q2vxphfvmfdmqxpgyp0734yn341sy9n8pkkk"))))
+ "1lzc8arbpcxgfap3dfsgq8crpp1cxd9qlbrhvyvl79zgpxjqx4q2"))))
(properties `((upstream-name . "muhaz")))
(build-system r-build-system)
(propagated-inputs
(define-public r-yardstick
(package
(name "r-yardstick")
- (version "0.0.7")
+ (version "0.0.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "yardstick" version))
(sha256
(base32
- "1yrvlhn4gxyn9f20z5yv3xam0j0a8z362jwa32r33r0g0jk5z2fq"))))
+ "13b0lyj2k0r568mwlyz9yvp9156rzlj4jqnjazaffh9vwqh4whir"))))
(properties `((upstream-name . "yardstick")))
(build-system r-build-system)
(propagated-inputs
("r-generics" ,r-generics)
("r-proc" ,r-proc)
("r-rlang" ,r-rlang)
- ("r-tidyselect" ,r-tidyselect)))
+ ("r-tidyselect" ,r-tidyselect)
+ ("r-vctrs" ,r-vctrs)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/tidymodels/yardstick")
(define-public r-slider
(package
(name "r-slider")
- (version "0.1.5")
+ (version "0.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "slider" version))
(sha256
(base32
- "1x4jwfxam4czfkb1s5qds5krfw1h2p5a4rh6f5z4yvhsv0d81xck"))))
+ "1jijh8f3qcn8fa677sqvgl2fb4r5vca1cw4l2vbcqscxb2hr4bqw"))))
(properties `((upstream-name . "slider")))
(build-system r-build-system)
(propagated-inputs
- `(("r-glue" ,r-glue)
+ `(("r-ellipsis" ,r-ellipsis)
+ ("r-glue" ,r-glue)
("r-rlang" ,r-rlang)
("r-vctrs" ,r-vctrs)
("r-warp" ,r-warp)))
methods, and post-processing steps.")
(license license:expat)))
+(define-public r-workflowsets
+ (package
+ (name "r-workflowsets")
+ (version "0.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "workflowsets" version))
+ (sha256
+ (base32
+ "1q41isvj7hhbkx3y8k6kazpiygig92xannsz8dpklh0k3j9l3c2p"))))
+ (properties `((upstream-name . "workflowsets")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-cli" ,r-cli)
+ ("r-dplyr" ,r-dplyr)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-prettyunits" ,r-prettyunits)
+ ("r-purrr" ,r-purrr)
+ ("r-rlang" ,r-rlang)
+ ("r-rsample" ,r-rsample)
+ ("r-tibble" ,r-tibble)
+ ("r-tidyr" ,r-tidyr)
+ ("r-tune" ,r-tune)
+ ("r-vctrs" ,r-vctrs)
+ ("r-withr" ,r-withr)
+ ("r-workflows" ,r-workflows)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/tidymodels/workflowsets")
+ (synopsis "Create a collection of tidymodels workflows")
+ (description
+ "A workflow is a combination of a model and preprocessors (e.g, a
+formula, recipe, etc.). In order to try different combinations of these, an
+object can be created that contains many workflows. There are functions to
+create workflows en masse as well as training them and visualizing the
+results.")
+ (license license:expat)))
+
(define-public r-tidyposterior
(package
(name "r-tidyposterior")
- (version "0.0.3")
+ (version "0.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidyposterior" version))
(sha256
(base32
- "0wsv800w056ziqbnwal7ncmdy4li8cn5yrdx07w35b7j8kl4mwhg"))))
+ "1h1664sjrg6akph6nrk8ynn2kjiswv6gshy35gamam1h4axf6wah"))))
(properties `((upstream-name . "tidyposterior")))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
("r-generics" ,r-generics)
("r-ggplot2" ,r-ggplot2)
- ("r-lifecycle" ,r-lifecycle)
("r-purrr" ,r-purrr)
("r-rlang" ,r-rlang)
("r-rsample" ,r-rsample)
("r-rstanarm" ,r-rstanarm)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)
- ("r-vctrs" ,r-vctrs)))
+ ("r-tune" ,r-tune)
+ ("r-vctrs" ,r-vctrs)
+ ("r-workflowsets" ,r-workflowsets)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://tidyposterior.tidymodels.org")
(define-public r-altmeta
(package
(name "r-altmeta")
- (version "3.2")
+ (version "3.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "altmeta" version))
(sha256
(base32
- "0z252lbsknqp33i0b0xf5r7spr535iq47bv40vgip6nsqhgrl7b0"))))
+ "1xq12hnzxh7kgv2i36xprg4lkvqfmxwz3sq4a1jlq2d5g3narvcm"))))
(properties `((upstream-name . "altmeta")))
(build-system r-build-system)
(propagated-inputs
(define-public r-qtl
(package
(name "r-qtl")
- (version "1.47-9")
+ (version "1.48-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "qtl" version))
(sha256
(base32
- "0hffirsvw9j82cdx6l7vhqn3a7ab52claqjlinv3lswl1nsfg93b"))))
+ "098mgmfj8ndi8yipr9b3f6gbbh78cgp9j7y561nlnhrnyc8bsih9"))))
(build-system r-build-system)
(home-page "https://rqtl.org/")
(synopsis "R package for analyzing QTL experiments in genetics")
(define-public r-seurat
(package
(name "r-seurat")
- (version "4.0.0")
+ (version "4.0.1")
(source (origin
(method url-fetch)
(uri (cran-uri "Seurat" version))
(sha256
(base32
- "1mp3py00bmzj4541d8ry5sfzkpfzvnl9dpa8n4qhakd13dl30xdn"))))
+ "17cmp9mimvykb8ny796dn1zwmvg0pwwjw1zcixyamc5q1lwnxi3p"))))
(properties `((upstream-name . "Seurat")))
(build-system r-build-system)
- ;; This is needed because r-spatstat has been split up and there has
- ;; been no new release of Seurat since then.
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'fix-spatstat-import
- (lambda _
- (substitute* "NAMESPACE"
- (("importFrom\\(spatstat,markvario\\)")
- "importFrom(spatstat.core,markvario)")
- (("importFrom\\(spatstat,ppp\\)")
- "importFrom(spatstat.geom,ppp)")))))))
(propagated-inputs
`(("r-cluster" ,r-cluster)
("r-cowplot" ,r-cowplot)
("r-sctransform" ,r-sctransform)
("r-seuratobject" ,r-seuratobject)
("r-shiny" ,r-shiny)
- ("r-spatstat" ,r-spatstat)
+ ("r-spatstat-core" ,r-spatstat-core)
+ ("r-spatstat-geom" ,r-spatstat-geom)
("r-tibble" ,r-tibble)
("r-uwot" ,r-uwot)))
(home-page "http://www.satijalab.org/seurat")
(define-public r-phangorn
(package
(name "r-phangorn")
- (version "2.5.5")
+ (version "2.6.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "phangorn" version))
(sha256
(base32
- "0ihkaykqjmf80d8wrk3saphxvnv58zma6pd13633bd3cwanc33f5"))))
+ "08yqz8qlw960x4b52wzrm22f242xnpc8695pjkhy7bi1nzm303ga"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ape" ,r-ape)
("r-matrix" ,r-matrix)
("r-quadprog" ,r-quadprog)
("r-rcpp" ,r-rcpp)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/KlausVigo/phangorn")
(synopsis "Phylogenetic analysis in R")
(description
rate speciation and extinction.")
(license license:gpl2+)))
-(define-public r-absfiltergsea
- (package
- (name "r-absfiltergsea")
- (version "1.5.1")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "AbsFilterGSEA" version))
- (sha256
- (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
- (properties `((upstream-name . "AbsFilterGSEA")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-deseq" ,r-deseq)
- ("r-limma" ,r-limma)
- ("r-rcpp" ,r-rcpp)
- ("r-rcpparmadillo" ,r-rcpparmadillo)))
- (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/")
- (synopsis "Improved false positive control of gene-permuting with absolute filtering")
- (description
- "This package provides a function that performs gene-permuting of a gene-set
-enrichment analysis (GSEA) calculation with or without the absolute filtering.
- Without filtering, users can perform (original) two-tailed or one-tailed
-absolute GSEA.")
- (license license:gpl2)))
-
(define-public r-calculus
(package
(name "r-calculus")
(define-public r-mlr3misc
(package
(name "r-mlr3misc")
- (version "0.7.0")
+ (version "0.8.0")
(source (origin
(method url-fetch)
(uri (cran-uri "mlr3misc" version))
(sha256
(base32
- "19k3l2d6wnqvdng0m7p54rrlvwl5457lcy7bg82m2bbpqxi8qch3"))))
+ "0mzicqs8rhzppyd7v3ljqs35k8pp7p2jg5cs7hx21mxr831bwsys"))))
(build-system r-build-system)
(propagated-inputs
`(("r-backports" ,r-backports)
(define-public r-mlr3learners
(package
(name "r-mlr3learners")
- (version "0.4.3")
+ (version "0.4.5")
(source (origin
(method url-fetch)
(uri (cran-uri "mlr3learners" version))
(sha256
(base32
- "1wxlpzz3hpkn77n4ag1v868dmp140j1pmrhynsv5xfgk9fg0w7ri"))))
+ "02v4y32yn1m0akkqzhfg65ib21rgy9iz8db4kdcrvi949clkxnfk"))))
(build-system r-build-system)
(propagated-inputs
`(("r-data-table" ,r-data-table)
(define-public r-bbotk
(package
(name "r-bbotk")
- (version "0.3.1")
+ (version "0.3.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "bbotk" version))
(sha256
(base32
- "1f29wxnxr73c4yp5afk05jqggpm7k1z8wiak8xsyw68h7xflq550"))))
+ "0bd9nxfgsj4ixpgky1mj6knb8l8nivvxpqpyw8vgpkj0za7gp4gr"))))
(properties `((upstream-name . "bbotk")))
(build-system r-build-system)
(propagated-inputs
(define-public r-textshaping
(package
(name "r-textshaping")
- (version "0.3.2")
+ (version "0.3.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "textshaping" version))
(sha256
(base32
- "0fqh4z505b2qriqcj70g2hhdgiawd3w2rs9rqxdwizz5vk8jjygx"))))
+ "0yl3cv6r8k27h4lzbrsikjydhz94skdjmxx4zqzihvb7h3jfnlpn"))))
(properties `((upstream-name . "textshaping")))
(build-system r-build-system)
(inputs
(define-public r-ragg
(package
(name "r-ragg")
- (version "1.1.1")
+ (version "1.1.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ragg" version))
(sha256
(base32
- "0nh1xxrxgdbq9anzkc6k3n519czp9hqyiizakm3m2gl4l4w0vp0q"))))
+ "0q28bwjdxpxm1wlkd8sxdf1m1q8wp4mmzp83d3m09nyy90ydkd8w"))))
(properties `((upstream-name . "ragg")))
(build-system r-build-system)
(inputs
(define-public r-lwgeom
(package
(name "r-lwgeom")
- (version "0.2-5")
+ (version "0.2-6")
(source
- (origin
- (method url-fetch)
- (uri (cran-uri "lwgeom" version))
- (sha256
- (base32
- "0byhjqa2acns8mznl1ngnfygxxxyszvnq66qfg0smhhhdkwr67aa"))))
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "lwgeom" version))
+ (sha256
+ (base32
+ "1733iwinn426bcmgjxp4j0scvbz35rvqkanmw7g7f47l6j7w14vn"))))
(properties `((upstream-name . "lwgeom")))
(build-system r-build-system)
- (inputs `(("geos" ,geos) ("proj" ,proj) ("sqlite" ,sqlite)))
+ (inputs
+ `(("geos" ,geos)
+ ("proj" ,proj)
+ ("sqlite" ,sqlite)
+ ("zlib" ,zlib)))
(propagated-inputs
- `(("r-rcpp" ,r-rcpp)
- ("r-sf" ,r-sf)
- ("r-units" ,r-units)))
+ `(("r-rcpp" ,r-rcpp)
+ ("r-sf" ,r-sf)
+ ("r-units" ,r-units)))
(native-inputs `(("pkg-config" ,pkg-config)))
- (home-page
- "https://github.com/r-spatial/lwgeom/")
- (synopsis
- "Bindings to Selected 'liblwgeom' Functions for Simple Features")
+ (home-page "https://github.com/r-spatial/lwgeom/")
+ (synopsis "Bindings to Selected 'liblwgeom' Functions for Simple Features")
(description
- "Access to selected functions found in
+ "Access to selected functions found in
@url{https://github.com/postgis/postgis/tree/master/liblwgeom,liblwgeom}, the
light-weight geometry library used by @url{http://postgis.net/,PostGIS}.")
(license license:gpl2)))
(define-public r-stars
(package
(name "r-stars")
- (version "0.5-1")
+ (version "0.5-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "stars" version))
(sha256
(base32
- "0ybk899rc0rpf2cv5kwk78fvis5xnr255hfcy5khdxsxdqgl0m9j"))))
+ "0w2svw02ywvclq0nsnjns1n0rfr54q7x30y64y14n7zfr969ly1n"))))
(properties `((upstream-name . "stars")))
(build-system r-build-system)
(propagated-inputs
networks, dependency relationships as well as text clustering. Feel free to
join the effort of providing interesting text visualisations.")
(license license:gpl2)))
+
+(define-public r-gsa
+ (package
+ (name "r-gsa")
+ (version "1.03.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "GSA" version))
+ (sha256
+ (base32
+ "05x9wspah1cdznjpncqam1iawsxdiigyl8v2anyhss2k7wwd94p1"))))
+ (properties `((upstream-name . "GSA")))
+ (build-system r-build-system)
+ (home-page "https://statweb.stanford.edu/~tibs/GSA/")
+ (synopsis "Gene set analysis")
+ (description "This package lets you determine the significance of
+pre-defined sets of genes with respect to an outcome variable, such as a group
+indicator, a quantitative variable or a survival time.")
+ ;; Any version of the LGPL
+ (license license:lgpl3+)))
+
+(define-public r-samr
+ (package
+ (name "r-samr")
+ (version "3.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "samr" version))
+ (sha256
+ (base32
+ "01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"))))
+ (properties `((upstream-name . "samr")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-gsa" ,r-gsa)
+ ("r-impute" ,r-impute)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-openxlsx" ,r-openxlsx)
+ ("r-shiny" ,r-shiny)
+ ("r-shinyfiles" ,r-shinyfiles)))
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "https://statweb.stanford.edu/~tibs/SAM/")
+ (synopsis "Significance analysis of Microarrays")
+ (description
+ "This is a package for significance analysis of Microarrays for
+differential expression analysis, RNAseq data and related problems.")
+ ;; Any version of the LGPL
+ (license license:lgpl3+)))
+
+(define-public r-randomforestsrc
+ (package
+ (name "r-randomforestsrc")
+ (version "2.9.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "randomForestSRC" version))
+ (sha256
+ (base32
+ "05ifvj49jv0n5p6k46milpgj9r10sc5aw23fypyyibdgwpwvwixw"))))
+ (properties
+ `((upstream-name . "randomForestSRC")))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/randomForestSRC/")
+ (synopsis "Random forests for survival, regression, and classification")
+ (description
+ "This package implements fast OpenMP parallel computing of Breiman's
+random forests for survival, competing risks, regression and classification
+based on Ishwaran and Kogalur's popular random survival forests (RSF) package.
+It handles missing data and now includes multivariate, unsupervised forests,
+quantile regression and solutions for class imbalanced data. It provides a
+fast interface using subsampling and confidence regions for variable
+importance.")
+ (license license:gpl3+)))