;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2016, 2017 Ben Woodcroft <donttrustben@gmail.com>
-;;; Copyright © 2017, 2018 Roel Janssen <roel@gnu.org>
+;;; Copyright © 2016, 2017, 2018 Roel Janssen <roel@gnu.org>
;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Raoul Bonnal <ilpuccio.febo@gmail.com>
;;; Copyright © 2018 Vijayalakshmi Vedantham <vijimay12@gmail.com>
;;; Copyright © 2018 Laura Lazzati <laura.lazzati.15@gmail.com>
;;; Copyright © 2018 Leo Famulari <leo@famulari.name>
;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
+;;; Copyright © 2018 Eric Brown <brown@fastmail.com>
;;; Copyright © 2018, 2019 Brett Gilio <brettg@posteo.net>
;;; Copyright © 2019 Nicolò Balzarotti <anothersms@gmail.com>
;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
(define-public r-tidyverse
(package
(name "r-tidyverse")
- (version "1.2.1")
+ (version "1.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidyverse" version))
(sha256
(base32
- "0yy3fkjksgcn6wkbgsb0pbnmsyqs4m01mziqafhig578nixs4rxd"))))
+ "02gyys08qv2v4cl2d66gml4d31ipxay0iyfwwksvxyclx60wp2kd"))))
(build-system r-build-system)
(propagated-inputs
`(("r-broom" ,r-broom)
("r-lubridate" ,r-lubridate)
("r-magrittr" ,r-magrittr)
("r-modelr" ,r-modelr)
+ ("r-pillar" ,r-pillar)
("r-purrr" ,r-purrr)
("r-readr" ,r-readr)
("r-readxl" ,r-readxl)
(define-public r-vioplot
(package
(name "r-vioplot")
- (version "0.3.2")
+ (version "0.3.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "vioplot" version))
(sha256
(base32
- "13kfjp747bnzksai8j39y2hyl3ljc6n53c2cfhaw78q3d63x0lbv"))))
+ "1jjrsds7p1jnnr4970h43526b9cdv3azizjbalbfzjjylc53lrca"))))
(build-system r-build-system)
(propagated-inputs
`(("r-sm" ,r-sm)
(define-public r-sjplot
(package
(name "r-sjplot")
- (version "2.7.2")
+ (version "2.8.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "sjPlot" version))
(sha256
- (base32 "1kx1qqgp4fhwwwpqn9mv8m1pnpjxfs7ww36ns7j1ja4a7ydwn2hp"))))
+ (base32 "0ahz6v6bhvq1537inwakmrafs44hs2m9w0ra8q17fz626nn9rb9b"))))
(properties `((upstream-name . "sjPlot")))
(build-system r-build-system)
(propagated-inputs
`(("r-bayestestr" ,r-bayestestr)
- ("r-broom" ,r-broom)
("r-dplyr" ,r-dplyr)
+ ("r-effectsize" ,r-effectsize)
("r-forcats" ,r-forcats)
("r-ggeffects" ,r-ggeffects)
("r-ggplot2" ,r-ggplot2)
("r-magrittr" ,r-magrittr)
("r-mass" ,r-mass)
("r-modelr" ,r-modelr)
- ("r-nlme" ,r-nlme)
+ ("r-parameters" ,r-parameters)
("r-performance" ,r-performance)
("r-psych" ,r-psych)
("r-purrr" ,r-purrr)
(define-public r-tidytree
(package
(name "r-tidytree")
- (version "0.2.9")
+ (version "0.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidytree" version))
(sha256
- (base32 "1l9rk71dzlwg8736l0g4rdlq3pghxkfzmlxyln8y4bxx7ym51i6g"))))
+ (base32 "1sbfwcxf9v1lhpa0392b49b6qfjrq7nlqz2djqzk5aknj9j64zvy"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ape" ,r-ape)
(define-public r-rnifti
(package
(name "r-rnifti")
- (version "0.11.1")
+ (version "1.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "RNifti" version))
(sha256
(base32
- "0jcgdg5k2swmi57aqj347kfi1fc4nvag7pxdfz61kc0vqqamm0wg"))))
+ "0l61hjnzv043ibpkgrhc0yngaqmc58lkvii8j1dzh022z5wbqrj8"))))
(properties `((upstream-name . "RNifti")))
(build-system r-build-system)
(propagated-inputs `(("r-rcpp" ,r-rcpp)))
(define-public r-protviz
(package
(name "r-protviz")
- (version "0.4.0")
+ (version "0.5.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "protViz" version))
(sha256
(base32
- "150i2q4nakz28f39kmhrchz4qsr8ax6y02512md94k8hq4hamxg1"))))
+ "0cznzm1ijlq33yd5wsa61prav77y2vi698w0n2fx1xcv504c4bjv"))))
(properties `((upstream-name . "protViz")))
(build-system r-build-system)
- (inputs
- `(("perl" ,perl)
- ("python-2" ,python-2)))
(propagated-inputs `(("r-rcpp" ,r-rcpp)))
(home-page "https://github.com/protViz/protViz/")
(synopsis "Visualizing and analyzing mass spectrometry data in proteomics")
(define-public r-epi
(package
(name "r-epi")
- (version "2.38")
+ (version "2.40")
(source
(origin
(method url-fetch)
(uri (cran-uri "Epi" version))
(sha256
(base32
- "0ald9fjynrlyah8nzwfs49a08j4myd3c5bm56zn61gg5pyyhi8hd"))))
+ "046y10vwks5y84pzccmrn6d4pd6qz70imvp1hw5ywp8fnwzfh4g5"))))
(properties `((upstream-name . "Epi")))
(build-system r-build-system)
(propagated-inputs
(define-public r-future
(package
(name "r-future")
- (version "1.15.0")
+ (version "1.15.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "future" version))
(sha256
(base32
- "1cbp7agb9lipjxsh7xm1yphh8a4hrjy7wrbkvhsxn1swh0c4s3b7"))))
+ "101hi8warqa0py9l6c5p98f7i9xjhx01w655z6a35jx1dhspykzd"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
(define-public r-bookdown
(package
(name "r-bookdown")
- (version "0.15")
+ (version "0.16")
(source (origin
(method url-fetch)
(uri (cran-uri "bookdown" version))
(sha256
(base32
- "0pgkabaqsckaz8z1nlza84jp172jyzv17kx5dily43jfx5psy2ap"))))
+ "1gwgvx1yg6q3wccnhidr3gshdvlgr42i4pvlg4h29kpsa7smjiv1"))))
(build-system r-build-system)
(propagated-inputs
`(("r-htmltools" ,r-htmltools)
(define-public r-parameters
(package
(name "r-parameters")
- (version "0.2.0")
+ (version "0.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "parameters" version))
(sha256
(base32
- "1mgggb3l67wgjiccq4y84wbs2dw9qk01akd553yiwbwky9rpawgh"))))
+ "0ifb9g1h8sn661q7jf9d8glk58gxdcym5ywbmx7phwn0y3is5wdv"))))
(properties `((upstream-name . "parameters")))
(build-system r-build-system)
(propagated-inputs
files and to efficiently import multiple tabular data files into one
data.table.")
(license license:gpl3)))
+
+(define-public r-quadprog
+ (package
+ (name "r-quadprog")
+ (version "1.5-8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "quadprog" version))
+ (sha256
+ (base32 "1ka9g8zak8sg4y2xbz93dfrldznlk9qpd4pq9z21cdcdn3b8s4i2"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (home-page "https://cran.r-project.org/web/packages/quadprog")
+ (synopsis "Functions to solve quadratic programming problems")
+ (description
+ "This package contains routines and documentation for solving quadratic
+programming problems.")
+ (license license:gpl3+)))
+
+(define-public r-desolve
+ (package
+ (name "r-desolve")
+ (version "1.25")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "deSolve" version))
+ (sha256
+ (base32 "0735y3p5glhqx69rzrc8qgmvs7p7w0p98qxmvylb6bgqp6kp0cbp"))))
+ (properties `((upstream-name . "deSolve")))
+ (build-system r-build-system)
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (home-page "https://desolve.r-forge.r-project.org/")
+ (synopsis "Solvers for initial value problems of differential equations")
+ (description "This package provides functions that solve initial
+value problems of a system of first-order ordinary differential equations (ODE),
+of partial differential equations (PDE), of differential algebraic equations
+(DAE), and of delay differential equations. The functions provide an interface
+to the FORTRAN functions lsoda, lsodar, lsode, lsodes of the ODEPACK collection,
+to the FORTRAN functions dvode and daspk and a C-implementation of solvers of
+the Runge-Kutta family with fixed or variable time steps. The package contains
+routines designed for solving ODEs resulting from 1-D, 2-D and 3-D partial
+differential equations (PDE) that have been converted to ODEs by numerical
+differencing.")
+ (license license:gpl2+)))
+
+(define-public r-pracma
+ (package
+ (name "r-pracma")
+ (version "2.2.5")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "pracma" version))
+ (sha256
+ (base32 "0isd3s0i4mzmva8lkh0j76hwjy1w50q7d1n9lhxsnnkgalx3xs1g"))))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/pracma/")
+ (synopsis "Practical numerical math functions")
+ (description "This package provides functions for numerical analysis and
+linear algebra, numerical optimization, differential equations, plus some
+special functions. It uses Matlab function names where appropriate to simplify
+porting.")
+ (license license:gpl3+)))
+
+(define-public r-subplex
+ (package
+ (name "r-subplex")
+ (version "1.5-4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "subplex" version))
+ (sha256
+ (base32
+ "10cbgbx1bgsax5z7gz6716g360xpq4mvq19cf4qqrxv02mmwz57z"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (home-page "https://cran.r-project.org/web/packages/subplex")
+ (synopsis "Unconstrained optimization using the subplex algorithm")
+ (description
+ "This package implements the Subplex optimization algorithm.
+It solves unconstrained optimization problems using a simplex method on
+subspaces. The method is well suited for optimizing objective functions that
+are noisy or are discontinuous at the solution.")
+ (license license:gpl3+)))
+
+(define-public r-txtplot
+ (package
+ (name "r-txtplot")
+ (version "1.0-3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "txtplot" version))
+ (sha256
+ (base32
+ "1949ab1bzvysdb79g8x1gaknj0ih3d6g63pv9512h5m5l3a6c31h"))))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/txtplot/")
+ (synopsis "Text-based plotting")
+ (description "This package provides functions to produce rudimentary ASCII
+graphics directly in the terminal window. This package provides a basic
+plotting function (and equivalents of curve, density, acf and barplot) as well
+as a boxplot function.")
+ (license license:lgpl3+)))
HCoop / jackhill / guix / guix.git / blobdiff