can be computed between character vectors while taking proper care of encoding
or between integer vectors representing generic sequences.")
(license license:gpl3+)))
+
+(define-public r-mice
+ (package
+ (name "r-mice")
+ (version "2.46.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mice" version))
+ (sha256
+ (base32
+ "1gjvlk67zvgipfczsca8zqk97vg3sivv82hblsdwp14s7smhjcax"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-lattice" ,r-lattice)
+ ("r-mass" ,r-mass)
+ ("r-nnet" ,r-nnet)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rpart" ,r-rpart)
+ ("r-survival" ,r-survival)))
+ (home-page "https://cran.r-project.org/web/packages/mice/")
+ (synopsis "Multivariate imputation by chained equations")
+ (description
+ "Multiple imputation using @dfn{Fully Conditional Specification} (FCS)
+implemented by the MICE algorithm as described in @url{Van Buuren and
+Groothuis-Oudshoorn (2011), http://doi.org/10.18637/jss.v045.i03}. Each
+variable has its own imputation model. Built-in imputation models are
+provided for continuous data (predictive mean matching, normal), binary
+data (logistic regression), unordered categorical data (polytomous logistic
+regression) and ordered categorical data (proportional odds). MICE can also
+impute continuous two-level data (normal model, pan, second-level variables).
+Passive imputation can be used to maintain consistency between variables.
+Various diagnostic plots are available to inspect the quality of the
+imputations.")
+ ;; Any of these two versions.
+ (license (list license:gpl2 license:gpl3))))
+
+(define-public r-hardyweinberg
+ (package
+ (name "r-hardyweinberg")
+ (version "1.5.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "HardyWeinberg" version))
+ (sha256
+ (base32
+ "0xbcchmzii0jv0ygr91n72r39j1axraxd2i607b56v4yd5d8sy4k"))))
+ (properties `((upstream-name . "HardyWeinberg")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-mice" ,r-mice)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://cran.r-project.org/package=HardyWeinberg")
+ (synopsis "Statistical tests and graphics for Hardy-Weinberg equilibrium")
+ (description
+ "This package contains tools for exploring Hardy-Weinberg equilibrium for
+diallelic genetic marker data. All classical tests (chi-square, exact,
+likelihood-ratio and permutation tests) for Hardy-Weinberg equilibrium are
+included in the package, as well as functions for power computation and for
+the simulation of marker data under equilibrium and disequilibrium. Routines
+for dealing with markers on the X-chromosome are included. Functions for
+testing equilibrium in the presence of missing data by using multiple
+imputation are also provided. Implements several graphics for exploring the
+equilibrium status of a large set of diallelic markers: ternary plots with
+acceptance regions, log-ratio plots and Q-Q plots.")
+ (license license:gpl2+)))
+
+(define-public r-sm
+ (package
+ (name "r-sm")
+ (version "2.2-5.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "sm" version))
+ (sha256
+ (base32
+ "0hnq5s2fv94gaj0nyqc1vjdjd64vsp9z23nqa8hxvjcaf996rwj9"))))
+ (build-system r-build-system)
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "http://www.stats.gla.ac.uk/~adrian/sm/")
+ (synopsis "Smoothing methods for nonparametric regression and density estimation")
+ (description
+ "This is software accompanying the book 'Applied Smoothing Techniques for
+Data Analysis---The Kernel Approach with S-Plus Illustrations', Oxford
+University Press. It provides smoothing methods for nonparametric regression
+and density estimation")
+ (license license:gpl2+)))
+
+(define-public r-vioplot
+ (package
+ (name "r-vioplot")
+ (version "0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "vioplot" version))
+ (sha256
+ (base32
+ "16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0"))))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-sm" ,r-sm)))
+ (home-page "http://wsopuppenkiste.wiso.uni-goettingen.de/~dadler")
+ (synopsis "Violin plot")
+ (description
+ "This package provides a violin plot, which is a combination of a box
+plot and a kernel density plot.")
+ (license license:bsd-3)))
+
+(define-public r-rsofia
+ (package
+ (name "r-rsofia")
+ (version "1.1")
+ (source (origin
+ (method url-fetch)
+ ;; This package has been removed from CRAN, so we can
+ ;; only fetch it from the archives.
+ (uri (string-append "https://cran.r-project.org/src/"
+ "contrib/Archive/RSofia/RSofia_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0q931y9rcf6slb0s2lsxhgqrzy4yqwh8hb1124nxg0bjbxvjbihn"))))
+ (properties `((upstream-name . "RSofia")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-rcpp" ,r-rcpp)))
+ (home-page "https://cran.r-project.org/src/contrib/Archive/RSofia")
+ (synopsis "Port of sofia-ml to R")
+ (description "This package is a port of sofia-ml to R. Sofia-ml is a
+suite of fast incremental algorithms for machine learning that can be used for
+training models for classification or ranking.")
+ (license license:asl2.0)))
+
+(define-public r-bbmle
+ (package
+ (name "r-bbmle")
+ (version "1.0.20")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "bbmle" version))
+ (sha256
+ (base32
+ "1xzij7swrrzl5ly8l3lw6awh486zcm00251dwqws1y23fbgyh3vc"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-lattice" ,r-lattice)
+ ("r-mass" ,r-mass)
+ ("r-numderiv" ,r-numderiv)))
+ (home-page "http://cran.r-project.org/web/packages/bbmle/")
+ (synopsis "Tools for General Maximum Likelihood Estimation")
+ (description
+ "This package provides methods and functions for fitting maximum
+likelihood models in R. This package modifies and extends the @code{mle}
+classes in the @code{stats4} package.")
+ ;; Any version of the GPL
+ (license license:gpl2+)))
+
+(define-public r-xts
+ (package
+ (name "r-xts")
+ (version "0.10-0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "xts" version))
+ (sha256
+ (base32
+ "1w7lxy3hbf005fvpzbwiznj8jbxi07s4189vbgxisd35l9a4v6q4"))))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-zoo" ,r-zoo)))
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "https://github.com/joshuaulrich/xts")
+ (synopsis "Extensible time series")
+ (description
+ "This package provides for uniform handling of R's different time-based
+data classes by extending @code{zoo}, maximizing native format information
+preservation and allowing for user-level customization and extension, while
+simplifying cross-class interoperability.")
+ (license license:gpl2+)))
+
+(define-public r-performanceanalytics
+ (package
+ (name "r-performanceanalytics")
+ (version "1.4.3541")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "PerformanceAnalytics" version))
+ (sha256
+ (base32
+ "1czchsccsbdfjw743j6rm101q2q01pggyl8zmlva213pwm86zb3v"))))
+ (properties
+ `((upstream-name . "PerformanceAnalytics")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-xts" ,r-xts)
+ ("r-zoo" ,r-zoo)))
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "http://r-forge.r-project.org/projects/returnanalytics/")
+ (synopsis "Econometric tools for performance and risk analysis")
+ (description "This is a collection of econometric functions for
+performance and risk analysis. This package aims to aid practitioners and
+researchers in utilizing the latest research in analysis of non-normal return
+streams. In general, it is most tested on return (rather than price) data on
+a regular scale, but most functions will work with irregular return data as
+well, and increasing numbers of functions will work with P&L or price data
+where possible.")
+ ;; Either version may be picked.
+ (license (list license:gpl2 license:gpl3))))
+
+(define-public r-laeken
+ (package
+ (name "r-laeken")
+ (version "0.4.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "laeken" version))
+ (sha256
+ (base32
+ "1rhkv1kk508pwln1d325iq4fink2ncssps0ypxi52j9d7wk78la6"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-boot" ,r-boot)
+ ("r-mass" ,r-mass)))
+ (home-page "http://cran.r-project.org/web/packages/laeken/")
+ (synopsis "Estimation of indicators on social exclusion and poverty")
+ (description "This package provides tools for the estimation of indicators
+on social exclusion and poverty, as well as an implementation of Pareto tail
+modeling for empirical income distributions.")
+ (license license:gpl2+)))
+
+(define-public r-vcd
+ (package
+ (name "r-vcd")
+ (version "1.4-3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "vcd" version))
+ (sha256
+ (base32
+ "05azric2w8mrsdk7y0484cjygcgcmbp96q2v500wvn91fj98kkhp"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-colorspace" ,r-colorspace)
+ ("r-lmtest" ,r-lmtest)
+ ("r-mass" ,r-mass)))
+ (home-page "http://cran.r-project.org/web/packages/vcd/")
+ (synopsis "Visualizing categorical data")
+ (description "This package provides visualization techniques, data sets,
+summary and inference procedures aimed particularly at categorical data.
+Special emphasis is given to highly extensible grid graphics. The package was
+originally inspired by the book \"Visualizing Categorical Data\" by Michael
+Friendly and is now the main support package for a new book, \"Discrete Data
+Analysis with R\" by Michael Friendly and David Meyer (2015).")
+ (license license:gpl2)))
HCoop / jackhill / guix / guix.git / blobdiff