;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2013, 2014, 2015 Andreas Enge <andreas@enge.fr>
+;;; Copyright © 2013, 2014, 2015
, 2016 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
-;;; Copyright © 2014 John Darrington <jmd@gnu.org>
-;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2014, 2016 John Darrington <jmd@gnu.org>
+;;; Copyright © 2014, 2015, 2016 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2014 Federico Beffa <beffa@fbengineering.ch>
;;; Copyright © 2014 Mathieu Lirzin <mathieu.lirzin@openmailbox.org>
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015, 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2015 Fabian Harfert <fhmgufs@web.de>
+;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
#:use-module (guix build utils)
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
+ #:use-module (guix build-system r)
#:use-module (gnu packages algebra)
#:use-module (gnu packages bison)
#:use-module (gnu packages boost)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gd)
#:use-module (gnu packages ghostscript)
- #:use-module (gnu packages glib)
#:use-module (gnu packages gtk)
#:use-module (gnu packages image)
#:use-module (gnu packages less)
#:use-module (gnu packages zip)
#:use-module (srfi srfi-1))
+(define-public c-graph
+ (package
+ (name "c-graph")
+ (version "2.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "mirror://gnu/c-graph/c-graph-" version
+ ".tar.gz"))
+ (sha256 (base32
+ "1hlvpzrh7hzzf533diyfiabzskddi8zx92av9hwkjw3l46z7qv01"))))
+ (build-system gnu-build-system)
+ (inputs
+ `(("fortran" ,gfortran)))
+ (synopsis "Visualize and analyze convolution operations")
+ (description
+ "GNU C-Graph demonstrates the theory of convolution underlying
+engineering systems and signal analysis.")
+ (license license:gpl3+)
+ (home-page "http://www.gnu.org/software/c-graph/")))
+
(define-public units
(package
(name "units")
(define-public glpk
(package
(name "glpk")
- (version "4.59")
+ (version "4.60")
(source
(origin
(method url-fetch)
version ".tar.gz"))
(sha256
(base32
- "1bpbp5z0378kaj5bqmc5m2j5h9c7553p0s2j6a28badqghpbx673"))))
+ "15z2ymzqhxwss6wgdj5f7vkyqlqdsjgrvm0x871kmlx0n0664mhk"))))
(build-system gnu-build-system)
(inputs
`(("gmp" ,gmp)))
LP/MIP solver is included in the package.")
(license license:gpl3+)))
-(define-public pspp
+(define-public 4ti2
(package
- (name "pspp")
- (version "0.8.5")
+ (name "4ti2")
+ (version "1.6.7")
(source
(origin
(method url-fetch)
- (uri (string-append "mirror://gnu/pspp/pspp-"
- version ".tar.gz"))
+ (uri (string-append "http://www.4ti2.de/version_" version
+ "/4ti2-" version ".tar.gz"))
(sha256
(base32
- "0c8326yykidi94xi7jn27j8iqxc38vc07d4wf5zyk0l8lpzx5vz7"))))
+ "1frix3rnm9ffr93alqzw4cavxbfpf524l8rfbmcpyhwd3n1km0yl"))))
(build-system gnu-build-system)
- (inputs
- `(("cairo" ,cairo)
- ("fontconfig" ,fontconfig)
- ("gettext" ,gnu-gettext)
- ("gsl" ,gsl)
- ("libxml2" ,libxml2)
- ("pango" ,pango)
- ("readline" ,readline)
- ("gtk" ,gtk+-2)
- ("gtksourceview" ,gtksourceview-2)
- ("zlib" ,zlib)))
(native-inputs
- `(("glib" ,glib "bin") ;for glib-genmarshal
- ("perl" ,perl)
- ("texinfo" ,texinfo)
- ("pkg-config" ,pkg-config)))
- (home-page "http://www.gnu.org/software/pspp/")
- (synopsis "Statistical analysis")
+ `(("which" ,(@ (gnu packages base) which)))) ; for the tests
+ (inputs
+ `(("glpk" ,glpk)
+ ("gmp" ,gmp)))
+ (home-page "http://www.4ti2.de/")
+ (synopsis "Mathematical tool suite for problems on linear spaces")
(description
- "GNU PSPP is a statistical analysis program. It can perform
-descriptive statistics, T-tests, linear regression and non-parametric tests.
-It features both a graphical interface as well as command-line input. PSPP
-is designed to interoperate with Gnumeric, LibreOffice and OpenOffice. Data
-can be imported from spreadsheets, text files and database sources and it can
-be output in text, PostScript, PDF or HTML.")
- (license license:gpl3+)))
+ "4ti2 implements algorithms for solving algebraic, geometric and
+combinatorial problems on linear spaces. Among others, it solves systems
+of linear equations, computes extreme rays of polyhedral cones, solves
+integer programming problems and computes Markov bases for statistics.")
+ (license license:gpl2+)))
+
+(define-public cddlib
+ (package
+ (name "cddlib")
+ (version "0.94h")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "ftp://ftp.ifor.math.ethz.ch/pub/fukuda/cdd/cddlib-"
+ (string-delete #\. version) ".tar.gz"))
+ (sha256
+ (base32
+ "1dasasscwfg793q8fwzgwf64xwj7w62yfvszpr8x8g38jka08vgy"))))
+ (build-system gnu-build-system)
+ (inputs
+ `(("gmp" ,gmp)))
+ (home-page "https://www.inf.ethz.ch/personal/fukudak/cdd_home/index.html")
+ (synopsis "Library for convex hulls and extreme rays of polyhedra")
+ (description
+ "The C-library cddlib implements the Double Description Method of
+Motzkin et al. for generating all vertices (i.e. extreme points) and extreme
+rays of a general convex polyhedron given by a system of linear inequalities
+in arbitrary dimension. It can also be used for the converse operation of
+computing convex hulls.")
+ (license license:gpl2+)))
(define-public arpack-ng
(package
'install 'clean-install
;; Try to keep installed files from leaking build directory names.
(lambda* (#:key inputs outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out"))
- (fortran (assoc-ref inputs "gfortran")))
+ (let ((out (assoc-ref outputs "out")))
(substitute* (map (lambda (file)
(string-append out "/lib/petsc/conf/" file))
'("petscvariables" "PETScConfig.cmake"))
(((getcwd)) out))
;; Make compiler references point to the store
(substitute* (string-append out "/lib/petsc/conf/petscvariables")
- (("= g(cc|\\+\\+|fortran)" _ suffix)
- (string-append "= " fortran "/bin/g" suffix)))
+ (("= (gcc|g\\+\\+|gfortran)" _ compiler)
+ (string-append "= " (which compiler))))
;; PETSc installs some build logs, which aren't necessary.
(for-each (lambda (file)
(let ((f (string-append out "/lib/petsc/conf/" file)))
(method url-fetch)
(uri (string-append "http://slepc.upv.es/download/download.php?"
"filename=slepc-" version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1pv5iqz2kc8sj49zsabyz4arnfpana8mjrhq31vzgk16xldk3d1a"))))
(sha256
(base32
"1820jfp3mbl7n85765v5mp6p0gzqpgr4d2lrnhwj4gl7cwp5ndah"))
- (patches (list (search-patch "mumps-build-parallelism.patch")))))
+ (patches (search-patches "mumps-build-parallelism.patch"))))
(build-system gnu-build-system)
(inputs
`(("fortran" ,gfortran)
(inputs
(alist-delete "pt-scotch" (package-inputs mumps-openmpi)))))
+(define-public r-pracma
+ (package
+ (name "r-pracma")
+ (version "1.8.8")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "pracma" version))
+ (sha256
+ (base32 "0ans9l5rrb7a38gyi4qx4258sd5r5668vyrk02yzjpg9k3h8l165"))))
+ (build-system r-build-system)
+ (home-page "http://cran.r-project.org/web/packages/pracma")
+ (synopsis "Practical numerical math functions")
+ (description "This package provides functions for numerical analysis and
+linear algebra, numerical optimization, differential equations, plus some
+special functions. It uses Matlab function names where appropriate to simplify
+porting.")
+ (license license:gpl3+)))
+
(define-public superlu
(package
(name "superlu")
"superlu_dist_" version ".tar.gz"))
(sha256
(base32 "1hnak09yxxp026blq8zhrl7685yip16svwngh1wysqxf8z48vzfj"))
- (patches (list (search-patch "superlu-dist-scotchmetis.patch")))))
+ (patches (search-patches "superlu-dist-scotchmetis.patch"))))
(build-system gnu-build-system)
(native-inputs
`(("tcsh" ,tcsh)))
"scotch_" version ".tar.gz"))
(sha256
(base32 "1ir088mvrqggyqdkx9qfynmiaffqbyih5qfl5mga2nrlm1qlsgzm"))
- (patches (list (search-patch "scotch-test-threading.patch")
- (search-patch "pt-scotch-build-parallelism.patch")))))
+ (patches (search-patches "scotch-test-threading.patch"
+ "pt-scotch-build-parallelism.patch"))))
(build-system gnu-build-system)
(inputs
`(("zlib" ,zlib)
(sha256
(base32
"0x1rk659sn3cq0n5c90848ilzr1gb1wf0072fl6jhkdq00qgh2s0"))
- (patches (list (search-patch "maxima-defsystem-mkdir.patch")))))
+ (patches (search-patches "maxima-defsystem-mkdir.patch"))))
(build-system gnu-build-system)
(inputs
`(("gcl" ,gcl)
(sha256
(base32
"185jych0gdnpkjwxni7pd0dda149492zwq2457xdjg76bzj78mnp"))
- (patches (list (search-patch "dealii-p4est-interface.patch")))
+ (patches (search-patches "dealii-p4est-interface.patch"))
(modules '((guix build utils)))
(snippet
;; Remove bundled sources: UMFPACK, TBB, muParser, and boost
HCoop / jackhill / guix / guix.git / blobdiff