;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2015, 2016 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2016, 2017 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2015, 2016, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2016, 2017, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Meiyo Peng <meiyo.peng@gmail.com>
+;;; Copyright © 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2020 Mark H Weaver <mhw@netris.org>
;;;
;;; This file is part of GNU Guix.
;;;
(define-module (gnu packages datastructures)
#:use-module (gnu packages)
+ #:use-module (gnu packages autotools)
+ #:use-module (gnu packages boost)
#:use-module (gnu packages perl)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
+ #:use-module (guix git-download)
+ #:use-module (guix build-system cmake)
#:use-module (guix build-system gnu))
(define-public gdsl
(define-public marisa
(package
(name "marisa")
- (version "0.2.5")
+ (version "0.2.6")
(source
(origin
(method url-fetch)
- (uri (string-append "https://github.com/s-yata/marisa-trie"
- "/releases/download/v" version "/" name "-"
- version ".tar.gz"))
+ (uri (string-append "https://github.com/s-yata/marisa-trie/files/"
+ "4832504/marisa-" version ".tar.gz"))
(sha256
- (base32 "19ifrcmnbr9whaaf4ly3s9ndyiq9sjqhnfkrxbz9zsb44w2n36hf"))))
+ (base32 "1pk6wmi28pa8srb4szybrwfn71jldb61c5vgxsiayxcyg1ya4qqh"))))
(build-system gnu-build-system)
+ (native-inputs
+ `(("autoconf" ,autoconf)
+ ("automake" ,automake)
+ ("libtool" ,libtool)))
(home-page "https://github.com/s-yata/marisa-trie")
(synopsis "Trie data structure C++ library")
- (description "Matching Algorithm with Recursively Implemented
-StorAge (MARISA) is a static and space-efficient trie data structure C++
+ (description "@acronym{MARISA, Matching Algorithm with Recursively
+Implemented StorAge} is a static and space-efficient trie data structure C++
library.")
;; Dual-licensed, according to docs/readme.en.html (source files lack
(define-public sparsehash
(package
(name "sparsehash")
- (version "2.0.3")
+ (version "2.0.4")
(source (origin
- (method url-fetch)
- (uri (string-append "https://github.com/sparsehash/sparsehash/"
- "archive/sparsehash-" version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/sparsehash/sparsehash")
+ (commit (string-append name "-" version))))
+ (file-name (git-file-name name version))
(sha256
(base32
- "133szz0ldwch0kd91l0sa57qsnl020njn622szd9cxrjqyjqds85"))))
+ "1pf1cjvcjdmb9cd6gcazz64x0cd2ndpwh6ql2hqpypjv725xwxy7"))))
(build-system gnu-build-system)
(synopsis "Memory-efficient hashtable implementations")
(description
(define-public ssdeep
(package
(name "ssdeep")
- (version "2.13")
- (source (origin
- (method url-fetch)
- (uri (string-append "mirror://sourceforge/ssdeep/"
- name "-" version "/"
- name "-" version ".tar.gz"))
- (sha256
- (base32
- "1igqy0j7jrklb8fdlrm6ald4cyl1fda5ipfl8crzyl6bax2ajk3f"))))
+ (version "2.14.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/ssdeep-project/ssdeep/"
+ "releases/download/release-" version "/"
+ "ssdeep-" version ".tar.gz"))
+ (sha256
+ (base32 "04qkjc6kksxkv7xbnk32rwmf3a8czdv2vvrdzfs0kw06h73snbpz"))))
(build-system gnu-build-system)
- (home-page "http://ssdeep.sourceforge.net")
+ (arguments
+ `(#:configure-flags
+ (list "--disable-static")))
+ (home-page "https://ssdeep-project.github.io")
(synopsis "Context-triggered piecewise hashing algorithm")
(description "ssdeep computes and matches context triggered piecewise
hashes (CTPH), also called fuzzy checksums. It can identify similar files
(define-public liburcu
(package
(name "liburcu")
- (version "0.10.1")
+ (version "0.12.1")
(source (origin
(method url-fetch)
(uri (string-append "https://www.lttng.org/files/urcu/"
"userspace-rcu-" version ".tar.bz2"))
(sha256
(base32
- "01pbg67qy5hcssy2yi0ckqapzfclgdq93li2rmzw4pa3wh5j42cw"))))
+ "03nd1gy2c3fdb6xwdrd5lr1jcjxbzffqh3z91mzbjhjn6k8fmymv"))))
(build-system gnu-build-system)
(native-inputs
`(("perl" ,perl))) ; for tests
- (home-page "http://liburcu.org/")
+ (home-page "https://liburcu.org/")
(synopsis "User-space RCU data synchronisation library")
(description "liburcu is a user-space @dfn{Read-Copy-Update} (RCU) data
synchronisation library. It provides read-side access that scales linearly
(define-public uthash
(package
(name "uthash")
- (version "2.0.2")
+ (version "2.1.0")
(source
(origin
- (method url-fetch)
- (file-name (string-append name "-" version ".tar.gz"))
- (uri (string-append "https://github.com/troydhanson/uthash/archive/v"
- version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/troydhanson/uthash")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
- (base32
- "1la82gdlyl7m8ahdjirigwfh7zjgkc24cvydrqcri0vsvm8iv8rl"))))
+ (base32 "0k80bjbb6ss5wpmfmfji6xbyjm990hg9kcshwwnhdnh73vxkcd1m"))))
(build-system gnu-build-system)
(native-inputs
`(("perl" ,perl)))
(replace 'check
(lambda* (#:key make-flags #:allow-other-keys)
(with-directory-excursion "tests"
- (zero? (apply system* "make"
- make-flags)))))
+ (apply invoke "make" make-flags))))
(replace 'install
;; There is no top-level Makefile to do this for us.
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
- (doc (string-append out "/share/doc/" ,name))
+ (doc (string-append out "/share/doc/" ,name "-" ,version))
(include (string-append out "/include")))
;; Don't install HTML files: they're just the below .txt files
;; dolled up, can be stale, and regeneration requires asciidoc.
Any C structure can be stored in a hash table by adding @code{UT_hash_handle}
to the structure and choosing one or more fields to act as the key.")
(license license:bsd-2)))
+
+(define-public sdsl-lite
+ (package
+ (name "sdsl-lite")
+ (version "2.1.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/simongog/sdsl-lite/"
+ "releases/download/v" version "/"
+ "sdsl-lite-" version
+ ".tar.gz.offline.install.gz"))
+ (sha256
+ (base32
+ "1v86ivv3mmdy802i9xkjpxb4cggj3s27wb19ja4sw1klnivjj69g"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ (delete-file-recursively "external") #t))
+ (patches
+ (list (origin
+ (method url-fetch)
+ (uri "https://salsa.debian.org/science-team/libsdsl/raw/debian/2.1.1+dfsg-2/debian/patches/0001-Patch-cmake-files.patch")
+ (file-name "sdsl-lite-dont-use-bundled-libraries.patch")
+ (sha256
+ (base32
+ "0m542xpys54bni29zibgrfpgpd0zgyny4h131virxsanixsbz52z")))))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'install 'install-static-library
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ (copy-file "lib/libsdsl_static.a"
+ (string-append out "/lib/libsdsl.a")))
+ #t))
+ (add-after 'install 'install-pkgconfig-file
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (lib (string-append out "/lib")))
+ (mkdir-p (string-append lib "/pkgconfig"))
+ (with-output-to-file (string-append lib "/pkgconfig/sdsl-lite.pc")
+ (lambda _
+ (format #t "prefix=~a~@
+ exec_prefix=${prefix}~@
+ libdir=${exec_prefix}/lib~@
+ includedir=${prefix}/include~@
+ ~@
+ ~@
+ Name: sdsl~@
+ Version: ~a~@
+ Description: SDSL: Succinct Data Structure Library~@
+ Libs: -L${libdir} -lsdsl -ldivsufsort -ldivsufsort64~@
+ Cflags: -I${includedir}~%"
+ out ,version)))
+ #t))))))
+ (native-inputs
+ `(("libdivsufsort" ,libdivsufsort)))
+ (home-page "https://github.com/simongog/sdsl-lite")
+ (synopsis "Succinct data structure library")
+ (description "The Succinct Data Structure Library (SDSL) is a powerful and
+flexible C++11 library implementing succinct data structures. In total, the
+library contains the highlights of 40 research publications. Succinct data
+structures can represent an object (such as a bitvector or a tree) in space
+close to the information-theoretic lower bound of the object while supporting
+operations of the original object efficiently. The theoretical time
+complexity of an operation performed on the classical data structure and the
+equivalent succinct data structure are (most of the time) identical.")
+ (license license:gpl3+)))
+
+(define-public libdivsufsort
+ (package
+ (name "libdivsufsort")
+ (version "2.0.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/y-256/libdivsufsort")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0fgdz9fzihlvjjrxy01md1bv9vh12rkgkwbm90b1hj5xpbaqp7z2"))))
+ (build-system cmake-build-system)
+ (arguments
+ '(#:tests? #f ; there are no tests
+ #:configure-flags
+ ;; Needed for rapmap and sailfish.
+ '("-DBUILD_DIVSUFSORT64=ON")))
+ (home-page "https://github.com/y-256/libdivsufsort")
+ (synopsis "Lightweight suffix-sorting library")
+ (description "libdivsufsort is a software library that implements a
+lightweight suffix array construction algorithm. This library provides a
+simple and an efficient C API to construct a suffix array and a
+Burrows-Wheeler transformed string from a given string over a constant-size
+alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1)
+bytes of memory space, where n is the length of the string.")
+ (license license:expat)))
+
+(define-public robin-map
+ (package
+ (name "robin-map")
+ (version "0.6.3")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/Tessil/robin-map")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1li70vwsksva9c4yly90hjafgqfixi1g6d52qq9p6r60vqc4pkjj"))))
+ (build-system cmake-build-system)
+ (native-inputs
+ `(("boost" ,boost))) ; needed for tests
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda _
+ (mkdir "tests")
+ (with-directory-excursion "tests"
+ (invoke "cmake" "../../source/tests")
+ (invoke "cmake" "--build" ".")
+ (invoke "./tsl_robin_map_tests")))))))
+ (home-page "https://github.com/Tessil/robin-map")
+ (synopsis "C++ implementation of a fast hash map and hash set")
+ (description "The robin-map library is a C++ implementation of a fast hash
+map and hash set using open-addressing and linear robin hood hashing with
+backward shift deletion to resolve collisions.
+
+Four classes are provided: tsl::robin_map, tsl::robin_set, tsl::robin_pg_map
+and tsl::robin_pg_set. The first two are faster and use a power of two growth
+policy, the last two use a prime growth policy instead and are able to cope
+better with a poor hash function.")
+ (license license:expat)))
HCoop / jackhill / guix / guix.git / blobdiff