data structures in C++.")
(license license:expat)))
+;; This package includes minified JavaScript files. When upgrading please
+;; check that there are no new minified JavaScript files.
+(define-public r-jquerylib
+ (package
+ (name "r-jquerylib")
+ (version "0.1.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "jquerylib" version))
+ (sha256
+ (base32
+ "1s0d6mws13hwkx07jqmry7vp30a05b2p9w7ir68bmkhasidwkzdq"))
+ (snippet
+ '(for-each delete-file
+ '("inst/lib/jquery-1.12.4.min.js"
+ "inst/lib/jquery-2.2.4.min.js"
+ "inst/lib/jquery-3.5.1.min.js")))))
+ (properties `((upstream-name . "jquerylib")))
+ (build-system r-build-system)
+ (arguments
+ `(#:modules ((guix build utils)
+ (guix build r-build-system)
+ (srfi srfi-1))
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'process-javascript
+ (lambda* (#:key inputs #:allow-other-keys)
+ (with-directory-excursion "inst/lib/"
+ (call-with-values
+ (lambda ()
+ (unzip2
+ `(("jquery-1.12.4.js"
+ "jquery-1.12.4.min.js")
+ ("jquery-2.2.4.js"
+ "jquery-2.2.4.min.js")
+ ("jquery-3.5.1.js"
+ "jquery-3.5.1.min.js"))))
+ (lambda (sources targets)
+ (for-each (lambda (source target)
+ (format #t "Processing ~a --> ~a~%"
+ source target)
+ (invoke "esbuild" source "--minify"
+ (string-append "--outfile=" target)))
+ sources targets)))))))))
+ (propagated-inputs
+ `(("r-htmltools" ,r-htmltools)))
+ (native-inputs
+ `(("esbuild" ,esbuild)))
+ (home-page "https://cran.r-project.org/package=jquerylib")
+ (synopsis "Obtain jQuery as an HTML dependency object")
+ (description
+ "Obtain any major version of jQuery and use it in any webpage generated
+by htmltools (e.g. shiny, htmlwidgets, and rmarkdown). Most R users don't
+need to use this package directly, but other R packages (e.g. shiny,
+rmarkdown, etc.) depend on this package to avoid bundling redundant copies of
+jQuery.")
+ (license license:expat)))
+
(define-public r-shiny
(package
(name "r-shiny")
(define-public r-pracma
(package
(name "r-pracma")
- (version "2.2.9")
+ (version "2.3.3")
(source (origin
(method url-fetch)
(uri (cran-uri "pracma" version))
(sha256
- (base32 "07mzhzz73wsjjw1q05l024gcd13hwnzsxf873q9dyhw6x3shzshc"))))
+ (base32 "0g5r5ir5k43ba0ngnsanp108k479l2dnsjd5w6idk1d34ivqs7yg"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/pracma/")
(synopsis "Practical numerical math functions")
(define-public r-actuar
(package
(name "r-actuar")
- (version "3.1-0")
+ (version "3.1-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "actuar" version))
(sha256
(base32
- "15a8axb2ym46j8vlm7icwnsc950p8m66hp0armha7drk0725y77k"))))
+ "0sxn1mskh7x164f1vbrqnadgxnq7y2p3a9mlmqc0sp6cqkw9lhp9"))))
(properties `((upstream-name . "actuar")))
(build-system r-build-system)
(propagated-inputs `(("r-expint" ,r-expint)))
(define-public r-archivist
(package
(name "r-archivist")
- (version "2.3.4")
+ (version "2.3.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "archivist" version))
(sha256
(base32
- "1i11hrcq1910jgd6diw6h3sxx624v57zjianm49pqvb2dvd0b8y7"))))
+ "0sk16bcafgswrvwh39ysbgm6jvsg20yil4pdsg3wsp81nnsrb43k"))))
(properties `((upstream-name . "archivist")))
(build-system r-build-system)
(propagated-inputs
("r-magrittr" ,r-magrittr)
("r-rcurl" ,r-rcurl)
("r-rsqlite" ,r-rsqlite)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://pbiecek.github.io/archivist/")
(synopsis "Tools for storing, restoring and searching for R objects")
(description
(define-public r-stopwords
(package
(name "r-stopwords")
- (version "2.1")
+ (version "2.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "stopwords" version))
(sha256
(base32
- "1g2p8gsj7xjck7idcwczgc7fmv72lzwjw00qarrj0cv44kypmiq8"))))
+ "1f862y30c4r0phamlp7shzkpxg0vh3i410xy0336w310hv3wqsxn"))))
(properties `((upstream-name . "stopwords")))
(build-system r-build-system)
(propagated-inputs
- `(("r-desc" ,r-desc)
- ("r-isocodes" ,r-isocodes)
- ("r-usethis" ,r-usethis)))
+ `(("r-isocodes" ,r-isocodes)))
(home-page "https://github.com/quanteda/stopwords")
(synopsis "Multilingual stopword lists")
(description
(define-public r-topicmodels
(package
(name "r-topicmodels")
- (version "0.2-11")
+ (version "0.2-12")
(source
(origin
(method url-fetch)
(uri (cran-uri "topicmodels" version))
(sha256
(base32
- "0jmp6wva99y0w40cfw7b0faylndhjam097x36ilc4vmyczcv89lw"))))
+ "1d6iizmn042b59q2y6qc82z19wq3xm0zvgkf8iqf8fdzh51kmn5g"))))
(properties `((upstream-name . "topicmodels")))
(build-system r-build-system)
- (native-inputs
+ (inputs
`(("gsl" ,gsl)))
(propagated-inputs
`(("r-modeltools" ,r-modeltools)
(define-public r-qgraph
(package
(name "r-qgraph")
- (version "1.6.5")
+ (version "1.6.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "qgraph" version))
(sha256
(base32
- "0pwys9irxvp0ap158drplyypkplbmwqinv0fmlsblk7q875cr592"))))
+ "153bqfmsrghkg7598nfr57r3cxv6dn6ir084njl2sqq5np0sj9di"))))
(properties `((upstream-name . "qgraph")))
(build-system r-build-system)
(propagated-inputs
`(("r-abind" ,r-abind)
- ("r-bdgraph" ,r-bdgraph)
("r-colorspace" ,r-colorspace)
("r-corpcor" ,r-corpcor)
- ("r-d3network" ,r-d3network)
("r-dplyr" ,r-dplyr)
("r-fdrtool" ,r-fdrtool)
("r-ggplot2" ,r-ggplot2)
- ("r-ggraph" ,r-ggraph)
("r-glasso" ,r-glasso)
("r-gtools" ,r-gtools)
("r-hmisc" ,r-hmisc)
- ("r-huge" ,r-huge)
("r-igraph" ,r-igraph)
("r-jpeg" ,r-jpeg)
("r-lavaan" ,r-lavaan)
("r-png" ,r-png)
("r-psych" ,r-psych)
("r-rcpp" ,r-rcpp)
- ("r-reshape2" ,r-reshape2)
- ("r-tidygraph" ,r-tidygraph)))
+ ("r-reshape2" ,r-reshape2)))
(home-page "http://sachaepskamp.com/qgraph/")
(synopsis "Weighted network visualization and analysis")
(description
(base32
"017kkzv9lxlz9qhg3gprrf1wcyflxrif6wjk27x9b4bdzylw6bsx"))))
(build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-before 'install 'install-server-binary
+ ;; Makevars tries to install to R's store directory.
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin")))
+ (substitute* "src/Makevars.in"
+ (("\\$\\(R_HOME\\)") out))
+ (mkdir-p bin)))))))
(propagated-inputs
`(("r-checkmate" ,r-checkmate)
("r-mime" ,r-mime)
(define-public r-spatstat-utils
(package
(name "r-spatstat-utils")
- (version "1.20-2")
+ (version "2.0-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat.utils" version))
(sha256
(base32
- "066f35017wpbz9plwc14gji3ddq4a1h2lx4mcgxajrcrk0zl3hk2"))))
+ "1li0vksxpkvgyx3j2wi40kj5687vwakkfdix6icm6g01a0lb2m5d"))))
(properties
`((upstream-name . "spatstat.utils")))
(build-system r-build-system)
(define-public r-spatstat-data
(package
(name "r-spatstat-data")
- (version "1.7-0")
+ (version "2.0-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "spatstat.data" version))
(sha256
(base32
- "0by10dx72jjn6rvgrdj4xwh4zg6vxi4cp536aq4b6drb7za95hdv"))))
+ "1z1jb1yzb7qhfg55dhzcrdvn5x8hpg9xif0hpnapddbmhxd1hbb7"))))
(properties `((upstream-name . "spatstat.data")))
(build-system r-build-system)
(propagated-inputs
(define-public r-cpp11
(package
(name "r-cpp11")
- (version "0.2.5")
+ (version "0.2.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "cpp11" version))
(sha256
(base32
- "081f3b98mcxyilqsxbzzdnj2x6v7xycprrw7r5934163q0397vvg"))))
+ "118i8s7978vl9xyhnb47wcbd6rcc6b958mq2w8s3rdsd4pxv62gz"))))
(properties `((upstream-name . "cpp11")))
(build-system r-build-system)
(native-inputs `(("r-knitr" ,r-knitr)))
(define-public r-seurat
(package
(name "r-seurat")
- (version "3.2.3")
+ (version "4.0.0")
(source (origin
(method url-fetch)
(uri (cran-uri "Seurat" version))
(sha256
(base32
- "11rzc7h2ad8z8k5r1sbz4d7y4rl3080qp2hh7vibwmipbkvlial3"))))
+ "1mp3py00bmzj4541d8ry5sfzkpfzvnl9dpa8n4qhakd13dl30xdn"))))
(properties `((upstream-name . "Seurat")))
(build-system r-build-system)
(propagated-inputs
("r-reticulate" ,r-reticulate)
("r-rlang" ,r-rlang)
("r-rocr" ,r-rocr)
- ("r-rsvd" ,r-rsvd)
("r-rtsne" ,r-rtsne)
("r-scales" ,r-scales)
("r-scattermore" ,r-scattermore)
("r-sctransform" ,r-sctransform)
+ ("r-seuratobject" ,r-seuratobject)
("r-shiny" ,r-shiny)
("r-spatstat" ,r-spatstat)
("r-tibble" ,r-tibble)
(define-public r-paradox
(package
(name "r-paradox")
- (version "0.6.0")
+ (version "0.7.0")
(source (origin
(method url-fetch)
(uri (cran-uri "paradox" version))
(sha256
(base32
- "1zv0q411wcwigkf4yggs3w2gz48lvv3jhnrddrv40qih8b70ywi3"))))
+ "1fz6sdwvvifm4qbmwgm27dil278mswvcfw8bbsvli5v4l1ghw8kj"))))
(build-system r-build-system)
(propagated-inputs
`(("r-backports" ,r-backports)
(define-public r-mlr3
(package
(name "r-mlr3")
- (version "0.9.0")
+ (version "0.10.0")
(source (origin
(method url-fetch)
(uri (cran-uri "mlr3" version))
(sha256
(base32
- "0gg7rrzxwrnpg6sgm0aa6bmfwmqv3d3za0ghnqrnibg33p9ynpgb"))))
+ "1arqijbbmhv57mj8kyq30zxykah83ab1d1c7gs0cxs0xhfwln66g"))))
(build-system r-build-system)
(propagated-inputs
`(("r-r6" ,r-r6)
(define-public r-bbotk
(package
(name "r-bbotk")
- (version "0.2.2")
+ (version "0.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "bbotk" version))
(sha256
(base32
- "06iz6gyymcxkbjiw049v1dk3vjfni646z247q08i2s0x59sqfqxv"))))
+ "0kbjbwwq1fdfpl4xzy08hz4qvhjjchvz58icxq0dlbsmdyqwhwv0"))))
(properties `((upstream-name . "bbotk")))
(build-system r-build-system)
(propagated-inputs
("r-mlr3misc" ,r-mlr3misc)
("r-paradox" ,r-paradox)
("r-r6" ,r-r6)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://bbotk.mlr-org.com")
(synopsis "Black-Box Optimization Toolkit")
(description "This package provides a common framework for optimization of
(define-public r-mlr3tuning
(package
(name "r-mlr3tuning")
- (version "0.5.0")
+ (version "0.6.0")
(source (origin
(method url-fetch)
(uri (cran-uri "mlr3tuning" version))
(sha256
(base32
- "1pn80qjxzj2pivgs6qgairci6yh1bdnl2zbgl9ykdip2rqzv6r6m"))))
+ "0kxf9wl1jnwyrj2zfmiz12w2594407y44m0xxwp9b2lrwxk31wm7"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bbotk" ,r-bbotk)