;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2013, 2014 Andreas Enge <andreas@enge.fr>
+;;; Copyright © 2013, 2014
, 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
;;; Copyright © 2014 John Darrington <jmd@gnu.org>
;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2014 Federico Beffa <beffa@fbengineering.ch>
;;; Copyright © 2014 Mathieu Lirzin <mathieu.lirzin@openmailbox.org>
+;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
+ #:use-module (guix svn-download)
#:use-module (guix utils)
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
#:use-module (gnu packages algebra)
#:use-module (gnu packages bison)
+ #:use-module (gnu packages check)
#:use-module (gnu packages cmake)
#:use-module (gnu packages compression)
#:use-module (gnu packages curl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
#:use-module (gnu packages readline)
+ #:use-module (gnu packages tbb)
#:use-module (gnu packages tcsh)
#:use-module (gnu packages tcl)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages texlive)
- #:use-module (gnu packages xml))
+ #:use-module (gnu packages xml)
+ #:use-module (gnu packages zip))
(define-public units
(package
be output in text, PostScript, PDF or HTML.")
(license license:gpl3+)))
+(define-public arpack-ng
+ (package
+ (name "arpack-ng")
+ (version "3.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/opencollab/arpack-ng/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1fwch6vipms1ispzg2djvbzv5wag36f1dmmr3xs3mbp6imfyhvff"))))
+ (build-system gnu-build-system)
+ (home-page "https://github.com/opencollab/arpack-ng")
+ (inputs
+ `(("lapack" ,lapack)
+ ("fortran" ,gfortran-4.8)))
+ (synopsis "Fortran subroutines for solving eigenvalue problems")
+ (description
+ "ARPACK-NG is a collection of Fortran77 subroutines designed to solve
+large scale eigenvalue problems.")
+ (license (license:non-copyleft "file://COPYING"
+ "See COPYING in the distribution."))))
+
(define-public lapack
(package
(name "lapack")
(description
"LAPACK is a Fortran 90 library for solving the most commonly occurring
problems in numerical linear algebra.")
- (license (license:bsd-style "file://LICENSE"
+ (license (license:non-copyleft "file://LICENSE"
"See LICENSE in the distribution."))))
(define-public gnuplot
(sha256
(base32 "0f9n0v3p3lwc7564791a39c6cn1d3dbrn7d1j3ikqsi27a8hy23d"))))
(build-system gnu-build-system)
+ (inputs
+ `(("zlib" ,zlib)))
(arguments
`(#:phases
(alist-cons-before
(substitute* "configure"
(("/bin/mv") "mv")))
%standard-phases)))
- (outputs '("out" "bin" "lib" "include"))
(home-page "http://www.hdfgroup.org")
(synopsis "Management suite for extremely large and complex data")
(description "HDF5 is a suite that makes possible the management of
(define-public octave
(package
(name "octave")
- (version "3.8.0")
+ (version "3.8.2")
(source
(origin
(method url-fetch)
version ".tar.gz"))
(sha256
(base32
- "0ks9pr154syw0vb3jn6xsnrkkrbvf9y7i7gaxa28rz6ngxbxvq9l"))))
+ "05slz8yx8k91fqlnfr1f0vni95iq9qmchz41c7nf4isn3b2fjn7j"))))
(build-system gnu-build-system)
(inputs
`(("lapack" ,lapack)
("fltk" ,fltk)
("fontconfig" ,fontconfig)
("freetype" ,freetype)
- ("hdf5-lib" ,hdf5 "lib")
- ("hdf5-include" ,hdf5 "include")
+ ("hdf5" ,hdf5)
("libxft" ,libxft)
("mesa" ,mesa)
("zlib" ,zlib)))
`(("fltk" ,fltk)
("gfortran" ,gfortran-4.8)
("gmp" ,gmp)
- ("hdf5-lib" ,hdf5 "lib")
- ("hdf5-include" ,hdf5 "include")
+ ("hdf5" ,hdf5)
("lapack" ,lapack)
("mesa" ,mesa)
("glu" ,glu)
(description "PETSc, pronounced PET-see (the S is silent), is a suite of
data structures and routines for the scalable (parallel) solution of
scientific applications modeled by partial differential equations.")
- (license (license:bsd-style
+ (license (license:non-copyleft
"http://www.mcs.anl.gov/petsc/documentation/copyright.html"))))
(define-public petsc-complex
;; GPLv2 only is therefore the smallest subset.
(license license:gpl2)))
+(define-public muparser
+ (package
+ (name "muparser")
+ (version "2.2.5")
+ (source
+ (origin
+ (method svn-fetch)
+ (uri (svn-reference
+ (url "http://muparser.googlecode.com/svn/trunk/")
+ (revision 34)))
+ (sha256
+ (base32
+ "1d6bdbhx9zj3srwj3m7c9hvr18gnx1fx43h6d25my7q85gicpcwn"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:configure-flags '("--enable-samples=no")
+ #:tests? #f)) ;no "check" target
+ (home-page "http://muparser.beltoforion.de/")
+ (synopsis "Fast parser library for mathematical expressions")
+ (description
+ "muParser is an extensible high performance math parser library. It is
+based on transforming an expression into a bytecode and precalculating
+constant parts of it.")
+ (license license:expat)))
+
+(define-public openblas
+ (package
+ (name "openblas")
+ (version "0.2.13")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/xianyi/OpenBLAS/tarball/v"
+ version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1asg5mix13ipxgj5h2yj2p0r8km1di5jbcjkn5gmhb37nx7qfv6k"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:tests? #f ;no "check" target
+ #:substitutable? #f ;force local build because of CPU detection
+ #:make-flags
+ (list (string-append "PREFIX=" (assoc-ref %outputs "out"))
+ "SHELL=bash"
+ "NO_LAPACK=1")
+ ;; no configure script
+ #:phases (alist-delete 'configure %standard-phases)))
+ (inputs
+ `(("fortran" ,gfortran-4.8)))
+ (native-inputs
+ `(("cunit" ,cunit)
+ ("perl" ,perl)))
+ (home-page "http://www.openblas.net/")
+ (synopsis "Optimized BLAS library based on GotoBLAS")
+ (description
+ "OpenBLAS is a BLAS library forked from the GotoBLAS2-1.13 BSD version.")
+ (license license:bsd-3)))
+
+(define-public openlibm
+ (package
+ (name "openlibm")
+ (version "0.4.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/JuliaLang/openlibm/archive/v"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0cwqqqlblj3kzp9aq1wnpfs1fl0qd1wp1xzm5shb09w06i4rh9nn"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:make-flags
+ (list (string-append "prefix=" (assoc-ref %outputs "out")))
+ #:phases
+ ;; no configure script
+ (alist-delete 'configure %standard-phases)
+ #:tests? #f)) ;the tests are part of the default target
+ (home-page "http://openlibm.org/")
+ (synopsis "Portable C mathematical library (libm)")
+ (description
+ "OpenLibm is an effort to have a high quality, portable, standalone C
+mathematical library (libm). It can be used standalone in applications and
+programming language implementations. The project was born out of a need to
+have a good libm for the Julia programming langage that worked consistently
+across compilers and operating systems, and in 32-bit and 64-bit
+environments.")
+ ;; See LICENSE.md for details.
+ (license (list license:expat
+ license:isc
+ license:bsd-2
+ license:public-domain
+ license:lgpl2.1+))))
+
+(define-public openspecfun
+ (package
+ (name "openspecfun")
+ (version "0.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/JuliaLang/openspecfun/archive/v"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0nsa3jjmlhcqkw5ba5ypbn3n0c8b6lc22zzlxnmxkxi9shhdx65z"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:tests? #f ;no "check" target
+ #:make-flags
+ (list (string-append "prefix=" (assoc-ref %outputs "out")))
+ ;; no configure script
+ #:phases (alist-delete 'configure %standard-phases)))
+ (inputs
+ `(("fortran" ,gfortran-4.8)))
+ (home-page "https://github.com/JuliaLang/openspecfun")
+ (synopsis "Collection of special mathematical functions")
+ (description
+ "Openspecfun provides AMOS and Faddeeva. AMOS (from Netlib) is a
+portable package for Bessel Functions of a Complex Argument and Nonnegative
+Order; it contains subroutines for computing Bessel functions and Airy
+functions. Faddeeva allows computing the various error functions of arbitrary
+complex arguments (Faddeeva function, error function, complementary error
+function, scaled complementary error function, imaginary error function, and
+Dawson function); given these, one can also easily compute Voigt functions,
+Fresnel integrals, and similar related functions as well.")
+ ;; Faddeeva is released under the Expat license; AMOS is included as
+ ;; public domain software.
+ (license (list license:expat license:public-domain))))
+
+(define-public suitesparse
+ (package
+ (name "suitesparse")
+ (version "4.4.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "100hdzr0mf4mzlwnqpmwpfw4pymgsf9n3g0ywb1yps2nk1zbkdy5"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:parallel-build? #f ;cholmod build fails otherwise
+ #:tests? #f ;no "check" target
+ #:make-flags
+ (list "CC=gcc"
+ "BLAS=-lblas"
+ "TBB=-ltbb"
+ "CHOLMOD_CONFIG=-DNPARTITION" ;required when METIS is not used
+ (string-append "INSTALL_LIB="
+ (assoc-ref %outputs "out") "/lib")
+ (string-append "INSTALL_INCLUDE="
+ (assoc-ref %outputs "out") "/include"))
+ #:phases
+ (alist-cons-before
+ 'install 'prepare-out
+ ;; README.txt states that the target directories must exist prior to
+ ;; running "make install".
+ (lambda _
+ (mkdir-p (string-append (assoc-ref %outputs "out") "/lib"))
+ (mkdir-p (string-append (assoc-ref %outputs "out") "/include")))
+ ;; no configure script
+ (alist-delete 'configure %standard-phases))))
+ (inputs
+ `(("tbb" ,tbb)
+ ("lapack" ,lapack)))
+ (home-page "http://faculty.cse.tamu.edu/davis/suitesparse.html")
+ (synopsis "Suite of sparse matrix software")
+ (description
+ "SuiteSparse is a suite of sparse matrix algorithms, including: UMFPACK,
+multifrontal LU factorization; CHOLMOD, supernodal Cholesky; SPQR,
+multifrontal QR; KLU and BTF, sparse LU factorization, well-suited for circuit
+simulation; ordering methods (AMD, CAMD, COLAMD, and CCOLAMD); CSparse and
+CXSparse, a concise sparse Cholesky factorization package; and many other
+packages.")
+ ;; LGPLv2.1+:
+ ;; AMD, CAMD, BTF, COLAMD, CCOLAMD, CSparse, CXSparse, KLU, LDL
+ ;; GPLv2+:
+ ;; GPUQREngine, RBio, SuiteSparse_GPURuntime, SuiteSparseQR, UMFPACK
+ (license (list license:gpl2+ license:lgpl2.1+))))
+
(define-public atlas
(package
(name "atlas")
(srfi srfi-1)
(guix build gnu-build-system)
(guix build utils))
- #:configure-flags
+ #:configure-flags
`(;; Generate position independent code suitable for dynamic libraries
;; and use WALL timer to get more accurate timing.
"-Fa" "alg" "-fPIC" "-D" "c" "-DWALL"
(alist-cons-after
'install 'install-doc
(lambda* (#:key outputs inputs #:allow-other-keys)
- (let ((doc (string-append (assoc-ref outputs "doc")
+ (let ((doc (string-append (assoc-ref outputs "doc")
"/share/doc/atlas")))
(mkdir-p doc)
- (fold (lambda (file previous)
+ (fold (lambda (file previous)
(and previous (zero? (system* "cp" file doc))))
#t (find-files "../ATLAS/doc" ".*"))))
(alist-cons-after
where N is the number of cores of your CPU. Failure to do so will result in a
library with poor performance.")
(license license:bsd-3)))
+
+(define-public glm
+ (package
+ (name "glm")
+ (version "0.9.6.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "mirror://sourceforge/ogl-math/glm-"
+ version ".zip"))
+ (sha256
+ (base32
+ "1cnjmi033a16a95v6xfkr1bvfmkd26hzdjka8j1819hgn5b1nr8l"))))
+ (build-system cmake-build-system)
+ (native-inputs
+ `(("unzip" ,unzip)))
+ (home-page "http://glm.g-truc.net")
+ (synopsis "OpenGL Mathematics library")
+ (description "OpenGL Mathematics (GLM) is a header-only C++ mathematics
+library for graphics software based on the OpenGL Shading Language (GLSL)
+specifications.")
+ (license license:expat)))
HCoop / jackhill / guix / guix.git / blobdiff